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Who We Fund: Publication Detail

Project Title: TRANSLATIONAL REGULATION IN EXPOSURE BIOLOGY - XENOBIOTIC-INDUCED REPROGRAMING OF TRNA MODIFICATIONS AND SELECTIVE TRANSLATION OF CODON-BIASED RESPONSE GENES IN RAT AND HUMAN MODELS
PI: Begley, Thomas J
Institution: State University Of New York At Albany
Grant Number: R01ES026856

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Viewing 23 publications
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Publication Title Authors Grant Number(s) Journal (Pub date) PubMed Link Pub Year
Dengue virus exploits the host tRNA epitranscriptome to promote viral replication.   Chan, Cheryl; Kwan Sze, Newman Siu; Suzuki, Yuka; Ohira, Takayuki; Suzuki, Tsutomu; Begley, Th ... R01ES026856, R01ES026856 bioRxiv (2023 Nov 06) 37986976 Exiting the NIEHS site 2023 
Molecular Coping Mechanisms: Reprogramming tRNAs To Regulate Codon-Biased Translation of Stress Resp ...   Mitchener, Michelle M; Begley, Thomas J; Dedon, Peter C R01ES026856, R01ES026856, R01ES031529 Acc Chem Res (2023 Dec 05) 37992267 Exiting the NIEHS site 2023 
Queuosine Salvage in Bartonella henselae Houston 1: A Unique Evolutionary Path.   Quaiyum, Samia; Yuan, Yifeng; Sun, Guangxin; N Ratnayake, R M Madhushi; Hutinet, Geoffrey; Dedo ... R01ES026856, R01ES026856 bioRxiv (2023 Dec 06) 38106016 Exiting the NIEHS site 2023 
Arsenite toxicity is regulated by queuine availability and oxidation-induced reprogramming of the hu ...   Huber, Sabrina M; Begley, Ulrike; Sarkar, Anwesha; Gasperi, William; Davis, Evan T; Surampudi, ... R01ES026856, R01ES026856 Proc Natl Acad Sci U S A (2022 Sep 20) 36095201 Exiting the NIEHS site 2022 
Dysfunctional tRNA reprogramming and codon-biased translation in cancer.   Dedon, Peter C; Begley, Thomas J R01ES026856, R01ES026856, R01ES031529 Trends Mol Med (2022 Nov) 36241532 Exiting the NIEHS site 2022 
Epitranscriptomic Reprogramming Is Required to Prevent Stress and Damage from Acetaminophen.   Evke, Sara; Lin, Qishan; Melendez, Juan Andres; Begley, Thomas John R01ES026856, R01ES026856, R01ES031529 Genes (Basel) (2022 Feb 25) 35327975 Exiting the NIEHS site 2022 
Selenoproteins and the senescence-associated epitranscriptome.   Lee, May Y; Ojeda-Britez, Stephen; Ehrbar, Dylan; Samwer, Antonia; Begley, Thomas J; Melendez, ... R01ES026856, R01ES026856, R01ES031529 Exp Biol Med (Maywood) (2022 Dec) 36036467 Exiting the NIEHS site 2022 
Transcription-wide mapping of dihydrouridine reveals that mRNA dihydrouridylation is required for me ...   Finet, Olivier; Yague-Sanz, Carlo; Krüger, Lara Katharina; Tran, Phong; Migeot, Valérie; Louski ... R01ES026856, R01ES026856, R01ES031529 Mol Cell (2022 Jan 20) 34798057 Exiting the NIEHS site 2022 
Detecting the epitranscriptome.   Sarkar, Anwesha; Gasperi, William; Begley, Ulrike; Nevins, Steven; Huber, Sabrina M; Dedon, Pe ... R01ES026856, R01ES026856, R01ES031529 Wiley Interdiscip Rev RNA (2021 11) 33987958 Exiting the NIEHS site 2021 
Strategies to Avoid Artifacts in Mass Spectrometry-Based Epitranscriptome Analyses.   Kaiser, Steffen; Byrne, Shane R; Ammann, Gregor; Asadi Atoi, Paria; Borland, Kayla; Brecheisen, ... R01ES026856, R01ES026856, R01ES031576, T32ES007020 Angew Chem Int Ed Engl (2021 10 25) 34339593 Exiting the NIEHS site 2021 
Comparative tRNA sequencing and RNA mass spectrometry for surveying tRNA modifications.   Kimura, Satoshi; Dedon, Peter C; Waldor, Matthew K R01ES026856, R01ES026856 Nat Chem Biol (2020 09) 32514182 Exiting the NIEHS site 2020 
Loss of epitranscriptomic control of selenocysteine utilization engages senescence and mitochondrial ...   Lee, May Y; Leonardi, Andrea; Begley, Thomas J; Melendez, J Andrés R01ES026856, R01ES026856 Redox Biol (2020 01) 31765888 Exiting the NIEHS site 2020 
The epitranscriptomic writer ALKBH8 drives tolerance and protects mouse lungs from the environmental ...   Leonardi, Andrea; Kovalchuk, Nataliia; Yin, Lei; Endres, Lauren; Evke, Sara; Nevins, Steven; M ... P30ES006694, R01ES020867, R01ES026856, R01ES026856 Epigenetics (2020 10) 32303148 Exiting the NIEHS site 2020 
Epitranscriptomic systems regulate the translation of reactive oxygen species detoxifying and diseas ...   Leonardi, Andrea; Evke, Sara; Lee, May; Melendez, J Andres; Begley, Thomas J R01ES026856, R01ES026856 Free Radic Biol Med (2019 Nov 01) 31476365 Exiting the NIEHS site 2019 
Reciprocal regulation of TORC signaling and tRNA modifications by Elongator enforces nutrient-depend ...   Candiracci, Julie; Migeot, Valerie; Chionh, Yok-Hian; Bauer, Fanelie; Brochier, Thomas; Russell ... R01ES026856, R01ES026856 Sci Adv (2019 06) 31223645 Exiting the NIEHS site 2019 
The Versatile Roles of the tRNA Epitranscriptome during Cellular Responses to Toxic Exposures and En ...   Huber, Sabrina M; Leonardi, Andrea; Dedon, Peter C; Begley, Thomas J R01ES026856, R01ES026856 Toxics (2019 Mar 25) 30934574 Exiting the NIEHS site 2019 
A Proteomics Approach to Profiling the Temporal Translational Response to Stress and Growth.   Rothenberg, Daniel A; Taliaferro, J Matthew; Huber, Sabrina M; Begley, Thomas J; Dedon, Peter C ... P42ES027707, P42ES027707, R01ES026856, R01ES026856 iScience (2018 Nov 30) 30466063 Exiting the NIEHS site 2018 
Lifestyle modifications: coordinating the tRNA epitranscriptome with codon bias to adapt translation ...   Chan, Cheryl; Pham, Phuong; Dedon, Peter C; Begley, Thomas J R01ES026856, R01ES026856 Genome Biol (2018 12 27) 30587213 Exiting the NIEHS site 2018 
Phosphorylation of human TRM9L integrates multiple stress-signaling pathways for tumor growth suppre ...   Gu, Chen; Ramos, Jillian; Begley, Ulrike; Dedon, Peter C; Fu, Dragony; Begley, Thomas J R01ES026856, R01ES026856 Sci Adv (2018 Jul) 30009260 Exiting the NIEHS site 2018 
Mitochondrial ROS control of cancer.   Idelchik, María Del Pilar Sosa; Begley, Ulrike; Begley, Thomas J; Melendez, J Andrés R01ES026856, R01ES026856 Semin Cancer Biol (2017 Dec) 28445781 Exiting the NIEHS site 2017 
Three distinct 3-methylcytidine (m3C) methyltransferases modify tRNA and mRNA in mice and humans.   Xu, Luang; Liu, Xinyu; Sheng, Na; Oo, Kyaw Soe; Liang, Junxin; Chionh, Yok Hian; Xu, Juan; Ye ... R01ES026856, R01ES026856 J Biol Chem (2017 09 01) 28655767 Exiting the NIEHS site 2017 
Gene- and genome-based analysis of significant codon patterns in yeast, rat and mice genomes with th ...   Doyle, Frank; Leonardi, Andrea; Endres, Lauren; Tenenbaum, Scott A; Dedon, Peter C; Begley, Th ... R01ES026856, R01ES026856 Methods (2016 Sep 01) 27245397 Exiting the NIEHS site 2016 
N(6)-Methyladenosine RNA Modification Regulates Shoot Stem Cell Fate in Arabidopsis.   Shen, Lisha; Liang, Zhe; Gu, Xiaofeng; Chen, Ying; Teo, Zhi Wei Norman; Hou, Xingliang; Cai, ... R01ES026856, R01ES026856 Dev Cell (2016 07 25) 27396363 Exiting the NIEHS site 2016 
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