Project Title: | TRANSLATIONAL REGULATION IN EXPOSURE BIOLOGY - XENOBIOTIC-INDUCED REPROGRAMING OF TRNA MODIFICATIONS AND SELECTIVE TRANSLATION OF CODON-BIASED RESPONSE GENES IN RAT AND HUMAN MODELS |
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PI: | Begley, Thomas J |
Institution: | State University Of New York At Albany |
Grant Number: | R01ES026856 |
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Publication Title | Authors | Grant Number(s) | Journal (Pub date) | PubMed Link | Pub Year |
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Dengue virus exploits the host tRNA epitranscriptome to promote viral replication. | Chan, Cheryl; Kwan Sze, Newman Siu; Suzuki, Yuka; Ohira, Takayuki; Suzuki, Tsutomu; Begley, Th ... | R01ES026856, R01ES026856 | bioRxiv (2023 Nov 06) | 37986976 | 2023 |
Molecular Coping Mechanisms: Reprogramming tRNAs To Regulate Codon-Biased Translation of Stress Resp ... | Mitchener, Michelle M; Begley, Thomas J; Dedon, Peter C | R01ES026856, R01ES026856, R01ES031529 | Acc Chem Res (2023 Dec 05) | 37992267 | 2023 |
Queuosine Salvage in Bartonella henselae Houston 1: A Unique Evolutionary Path. | Quaiyum, Samia; Yuan, Yifeng; Sun, Guangxin; N Ratnayake, R M Madhushi; Hutinet, Geoffrey; Dedo ... | R01ES026856, R01ES026856 | bioRxiv (2023 Dec 06) | 38106016 | 2023 |
Arsenite toxicity is regulated by queuine availability and oxidation-induced reprogramming of the hu ... | Huber, Sabrina M; Begley, Ulrike; Sarkar, Anwesha; Gasperi, William; Davis, Evan T; Surampudi, ... | R01ES026856, R01ES026856 | Proc Natl Acad Sci U S A (2022 Sep 20) | 36095201 | 2022 |
Dysfunctional tRNA reprogramming and codon-biased translation in cancer. | Dedon, Peter C; Begley, Thomas J | R01ES026856, R01ES026856, R01ES031529 | Trends Mol Med (2022 Nov) | 36241532 | 2022 |
Epitranscriptomic Reprogramming Is Required to Prevent Stress and Damage from Acetaminophen. | Evke, Sara; Lin, Qishan; Melendez, Juan Andres; Begley, Thomas John | R01ES026856, R01ES026856, R01ES031529 | Genes (Basel) (2022 Feb 25) | 35327975 | 2022 |
Selenoproteins and the senescence-associated epitranscriptome. | Lee, May Y; Ojeda-Britez, Stephen; Ehrbar, Dylan; Samwer, Antonia; Begley, Thomas J; Melendez, ... | R01ES026856, R01ES026856, R01ES031529 | Exp Biol Med (Maywood) (2022 Dec) | 36036467 | 2022 |
Transcription-wide mapping of dihydrouridine reveals that mRNA dihydrouridylation is required for me ... | Finet, Olivier; Yague-Sanz, Carlo; Krüger, Lara Katharina; Tran, Phong; Migeot, Valérie; Louski ... | R01ES026856, R01ES026856, R01ES031529 | Mol Cell (2022 Jan 20) | 34798057 | 2022 |
Detecting the epitranscriptome. | Sarkar, Anwesha; Gasperi, William; Begley, Ulrike; Nevins, Steven; Huber, Sabrina M; Dedon, Pe ... | R01ES026856, R01ES026856, R01ES031529 | Wiley Interdiscip Rev RNA (2021 11) | 33987958 | 2021 |
Strategies to Avoid Artifacts in Mass Spectrometry-Based Epitranscriptome Analyses. | Kaiser, Steffen; Byrne, Shane R; Ammann, Gregor; Asadi Atoi, Paria; Borland, Kayla; Brecheisen, ... | R01ES026856, R01ES026856, R01ES031576, T32ES007020 | Angew Chem Int Ed Engl (2021 10 25) | 34339593 | 2021 |
Comparative tRNA sequencing and RNA mass spectrometry for surveying tRNA modifications. | Kimura, Satoshi; Dedon, Peter C; Waldor, Matthew K | R01ES026856, R01ES026856 | Nat Chem Biol (2020 09) | 32514182 | 2020 |
Loss of epitranscriptomic control of selenocysteine utilization engages senescence and mitochondrial ... | Lee, May Y; Leonardi, Andrea; Begley, Thomas J; Melendez, J Andrés | R01ES026856, R01ES026856 | Redox Biol (2020 01) | 31765888 | 2020 |
The epitranscriptomic writer ALKBH8 drives tolerance and protects mouse lungs from the environmental ... | Leonardi, Andrea; Kovalchuk, Nataliia; Yin, Lei; Endres, Lauren; Evke, Sara; Nevins, Steven; M ... | P30ES006694, R01ES020867, R01ES026856, R01ES026856 | Epigenetics (2020 10) | 32303148 | 2020 |
Epitranscriptomic systems regulate the translation of reactive oxygen species detoxifying and diseas ... | Leonardi, Andrea; Evke, Sara; Lee, May; Melendez, J Andres; Begley, Thomas J | R01ES026856, R01ES026856 | Free Radic Biol Med (2019 Nov 01) | 31476365 | 2019 |
Reciprocal regulation of TORC signaling and tRNA modifications by Elongator enforces nutrient-depend ... | Candiracci, Julie; Migeot, Valerie; Chionh, Yok-Hian; Bauer, Fanelie; Brochier, Thomas; Russell ... | R01ES026856, R01ES026856 | Sci Adv (2019 06) | 31223645 | 2019 |
The Versatile Roles of the tRNA Epitranscriptome during Cellular Responses to Toxic Exposures and En ... | Huber, Sabrina M; Leonardi, Andrea; Dedon, Peter C; Begley, Thomas J | R01ES026856, R01ES026856 | Toxics (2019 Mar 25) | 30934574 | 2019 |
A Proteomics Approach to Profiling the Temporal Translational Response to Stress and Growth. | Rothenberg, Daniel A; Taliaferro, J Matthew; Huber, Sabrina M; Begley, Thomas J; Dedon, Peter C ... | P42ES027707, P42ES027707, R01ES026856, R01ES026856 | iScience (2018 Nov 30) | 30466063 | 2018 |
Lifestyle modifications: coordinating the tRNA epitranscriptome with codon bias to adapt translation ... | Chan, Cheryl; Pham, Phuong; Dedon, Peter C; Begley, Thomas J | R01ES026856, R01ES026856 | Genome Biol (2018 12 27) | 30587213 | 2018 |
Phosphorylation of human TRM9L integrates multiple stress-signaling pathways for tumor growth suppre ... | Gu, Chen; Ramos, Jillian; Begley, Ulrike; Dedon, Peter C; Fu, Dragony; Begley, Thomas J | R01ES026856, R01ES026856 | Sci Adv (2018 Jul) | 30009260 | 2018 |
Mitochondrial ROS control of cancer. | Idelchik, María Del Pilar Sosa; Begley, Ulrike; Begley, Thomas J; Melendez, J Andrés | R01ES026856, R01ES026856 | Semin Cancer Biol (2017 Dec) | 28445781 | 2017 |
Three distinct 3-methylcytidine (m3C) methyltransferases modify tRNA and mRNA in mice and humans. | Xu, Luang; Liu, Xinyu; Sheng, Na; Oo, Kyaw Soe; Liang, Junxin; Chionh, Yok Hian; Xu, Juan; Ye ... | R01ES026856, R01ES026856 | J Biol Chem (2017 09 01) | 28655767 | 2017 |
Gene- and genome-based analysis of significant codon patterns in yeast, rat and mice genomes with th ... | Doyle, Frank; Leonardi, Andrea; Endres, Lauren; Tenenbaum, Scott A; Dedon, Peter C; Begley, Th ... | R01ES026856, R01ES026856 | Methods (2016 Sep 01) | 27245397 | 2016 |
N(6)-Methyladenosine RNA Modification Regulates Shoot Stem Cell Fate in Arabidopsis. | Shen, Lisha; Liang, Zhe; Gu, Xiaofeng; Chen, Ying; Teo, Zhi Wei Norman; Hou, Xingliang; Cai, ... | R01ES026856, R01ES026856 | Dev Cell (2016 07 25) | 27396363 | 2016 |