| Project Title: | REGULATION OF DNA EXCISION REPAIR IN CHROMATIN |
|---|---|
| PI: | Wyrick, John J |
| Institution: | Washington State University |
| Grant Number: | R01ES028698 |
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Viewing 29 publications
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| Publication Title | Authors | Grant Number(s) | Journal (Pub date) | PubMed Link | Pub Year |
|---|---|---|---|---|---|
| Analysis of cytosine deamination events in excision repair sequencing reads reveals mechanisms of in ... | Morledge-Hampton, Benjamin; Kalyanaraman, Ananth; Wyrick, John J | R01ES028698, R01ES032814 | Nucleic Acids Res (2024 Feb 28) |
38109317
|
2024 |
| Genome-wide impact of cytosine methylation and DNA sequence context on UV-induced CPD formation. | Wilson, Hannah E; Wyrick, John J | R01ES028698, R01ES032814, R21ES035139 | Environ Mol Mutagen (2024 Apr) |
37554110
|
2024 |
| A half century of exploring DNA excision repair in chromatin. | Smerdon, Michael J; Wyrick, John J; Delaney, Sarah | R01ES028698, R01ES032814, R21ES035139 | J Biol Chem (2023 Sep) |
37527775
|
2023 |
| Detecting recurrent passenger mutations in melanoma by targeted UV damage sequencing. | Selvam, Kathiresan; Sivapragasam, Smitha; Poon, Gregory M K; Wyrick, John J | R01ES028698, R01ES032814, R21ES035139 | Nat Commun (2023 May 11) |
37169747
|
2023 |
| Genome-wide maps of rare and atypical UV photoproducts reveal distinct patterns of damage formation ... | Bohm, Kaitlynne A; Morledge-Hampton, Benjamin; Stevison, Scott; Mao, Peng; Roberts, Steven A; W ... | R01ES028698, R01ES032814 | Proc Natl Acad Sci U S A (2023 Mar 07) |
36853943
|
2023 |
| Genome-wide maps of UVA and UVB mutagenesis in yeast reveal distinct causative lesions and mutationa ... | Laughery, Marian F; Plummer, Dalton A; Wilson, Hannah E; Vandenberg, Brittany N; Mitchell, Debr ... | R01ES028698, R01ES032814 | Genetics (2023 Jul 06) |
37170598
|
2023 |
| Damage mapping techniques and the light they have shed on canonical and atypical UV photoproducts. | Bohm, Kaitlynne A; Wyrick, John J | R01ES028698, R01ES032814 | Front Genet (2022) |
36704334
|
2022 |
| dCas9 binding inhibits the initiation of base excision repair in vitro. | Antony, Jacob S; Roberts, Steven A; Wyrick, John J; Hinz, John M | R01ES028698 | DNA Repair (Amst) (2022 Jan) |
34847381
|
2022 |
| High-resolution mapping demonstrates inhibition of DNA excision repair by transcription factors. | Duan, Mingrui; Sivapragasam, Smitha; Antony, Jacob S; Ulibarri, Jenna; Hinz, John M; Poon, Gre ... | R01ES028698, R01ES032814 | Elife (2022 Mar 15) |
35289750
|
2022 |
| Mapping atypical UV photoproducts in vitro and across the S. cerevisiae genome. | Bohm, Kaitlynne A; Sivapragasam, Smitha; Wyrick, John J | R01ES028698, R01ES032814 | STAR Protoc (2022 Mar 18) |
35005641
|
2022 |
| Molecular mechanism of UV damage modulation in nucleosomes. | Stark, Bastian; Poon, Gregory M K; Wyrick, John J | R01ES028698, R01ES032814 | Comput Struct Biotechnol J (2022) |
36212527
|
2022 |
| Set2 histone methyltransferase regulates transcription coupled-nucleotide excision repair in yeast. | Selvam, Kathiresan; Plummer, Dalton A; Mao, Peng; Wyrick, John J | R01ES028698, R01ES032814 | PLoS Genet (2022 Mar) |
35263330
|
2022 |
| Tips, Tricks, and Potential Pitfalls of CRISPR Genome Editing in Saccharomyces cerevisiae. | Antony, Jacob S; Hinz, John M; Wyrick, John J | R01ES028698, R01ES032814 | Front Bioeng Biotechnol (2022) |
35706506
|
2022 |
| CTCF binding modulates UV damage formation to promote mutation hot spots in melanoma. | Sivapragasam, Smitha; Stark, Bastian; Albrecht, Amanda V; Bohm, Kaitlynne A; Mao, Peng; Emehise ... | R01ES028698, R01ES032814 | EMBO J (2021 Oct 18) |
34487363
|
2021 |
| CTCF puts a new twist on UV damage and repair in skin cancer. | Stark, Bastian; Poon, Gregory M K; Wyrick, John J | R01ES028698, R01ES032814 | Mol Cell Oncol (2021) |
35419468
|
2021 |
| Distinct roles for RSC and SWI/SNF chromatin remodelers in genomic excision repair. | Bohm, Kaitlynne A; Hodges, Amelia J; Czaja, Wioletta; Selvam, Kathiresan; Smerdon, Michael J; M ... | R01ES028698 | Genome Res (2021 06) |
34001524
|
2021 |
| Elongation factor ELOF1 drives transcription-coupled repair and prevents genome instability. | Geijer, Marit E; Zhou, Di; Selvam, Kathiresan; Steurer, Barbara; Mukherjee, Chirantani; Evers, ... | R01ES028698 | Nat Cell Biol (2021 Jun) |
34108662
|
2021 |
| Mutperiod: Analysis of periodic mutation rates in nucleosomes. | Morledge-Hampton, Benjamin; Wyrick, John J | R01ES028698, R01ES032814 | Comput Struct Biotechnol J (2021) |
34527191
|
2021 |
| Publisher Correction: Elongation factor ELOF1 drives transcription-coupled repair and prevents genom ... | Geijer, Marit E; Zhou, Di; Selvam, Kathiresan; Steurer, Barbara; Mukherjee, Chirantani; Evers, ... | R01ES028698 | Nat Cell Biol (2021 Jul) |
34163038
|
2021 |
| Asymmetric repair of UV damage in nucleosomes imposes a DNA strand polarity on somatic mutations in ... | Mao, Peng; Smerdon, Michael J; Roberts, Steven A; Wyrick, John J | R01ES028698 | Genome Res (2020 01) |
31871068
|
2020 |
| Atypical UV Photoproducts Induce Non-canonical Mutation Classes Associated with Driver Mutations in ... | Laughery, Marian F; Brown, Alexander J; Bohm, Kaitlynne A; Sivapragasam, Smitha; Morris, Haley ... | R01ES028698 | Cell Rep (2020 11 17) |
33207206
|
2020 |
| Genome-Wide Mapping of UV-Induced DNA Damage with CPD-Seq. | Mao, Peng; Wyrick, John J | R01ES028698 | Methods Mol Biol (2020) |
32681485
|
2020 |
| Genome-wide role of Rad26 in promoting transcription-coupled nucleotide excision repair in yeast chr ... | Duan, Mingrui; Selvam, Kathiresan; Wyrick, John J; Mao, Peng | R01ES028698 | Proc Natl Acad Sci U S A (2020 08 04) |
32690696
|
2020 |
| NuA4 acetyltransferase is required for efficient nucleotide excision repair in yeast. | Hodges, Amelia J; Plummer, Dalton A; Wyrick, John J | R01ES028698 | DNA Repair (Amst) (2019 01) |
30473425
|
2019 |
| Organization of DNA damage, excision repair, and mutagenesis in chromatin: A genomic perspective. | Mao, Peng; Wyrick, John J | R01ES028698 | DNA Repair (Amst) (2019 09) |
31307926
|
2019 |
| R-loop formation by dCas9 is mutagenic in Saccharomyces cerevisiae. | Laughery, Marian F; Mayes, Hannah C; Pedroza, Ivan K; Wyrick, John J | R01ES028698 | Nucleic Acids Res (2019 Mar 18) |
30590793
|
2019 |
| Recurrent Noncoding Mutations in Skin Cancers: UV Damage Susceptibility or Repair Inhibition as Prim ... | Roberts, Steven A; Brown, Alexander J; Wyrick, John J | R01ES028698 | Bioessays (2019 Mar) |
30801747
|
2019 |
| Simple CRISPR-Cas9 Genome Editing in Saccharomyces cerevisiae. | Laughery, Marian F; Wyrick, John J | R01ES028698 | Curr Protoc Mol Biol (2019 Dec) |
31763795
|
2019 |
| Nucleosome positions establish an extended mutation signature in melanoma. | Brown, Alexander J; Mao, Peng; Smerdon, Michael J; Wyrick, John J; Roberts, Steven A | R01ES028698 | PLoS Genet (2018 11) |
30485262
|
2018 |