| Project Title: | GRADUATE TRAINING IN BIOINFORMATICS |
|---|---|
| PI: | Wright, Fred A. |
| Institution: | North Carolina State University Raleigh |
| Grant Number: | T32ES007329 |
These search results have not been confirmed by NIEHS and are therefore, not official. They are to be used only for general information and to inform the public and grantees on the breadth of research funded by NIEHS.
Viewing 50 publications
Export to Excel
(http://www.niehs.nih.gov//portfolio/index.cfm?do=portfolio.grantpubdetail&&grant_number=T32ES007329&format=excel)
| Publication Title | Authors | Grant Number(s) | Journal (Pub date) | PubMed Link | Pub Year |
|---|---|---|---|---|---|
| Simultaneous modeling of multivariate heterogeneous responses and heteroskedasticity via a two-stage ... | Ting, Bryan W; Wright, Fred A; Zhou, Yi-Hui | R01ES029911, T32ES007329 | Biom J (2023 Aug) |
37212427
|
2023 |
| Confidence bands and hypothesis tests for hit enrichment curves. | Ash, Jeremy R; Hughes-Oliver, Jacqueline M | T32ES007329 | J Cheminform (2022 Jul 28) |
35902962
|
2022 |
| Phylogeny-guided microbiome OTU-specific association test (POST). | Huang, Caizhi; Callahan, Benjamin J; Wu, Michael C; Holloway, Shannon T; Brochu, Hayden; Lu, W ... | T32ES007329 | Microbiome (2022 Jun 07) |
35668471
|
2022 |
| Utilizing Pine Needles to Temporally and Spatially Profile Per- and Polyfluoroalkyl Substances (PFAS ... | Kirkwood, Kaylie I; Fleming, Jonathon; Nguyen, Helen; Reif, David M; Baker, Erin S; Belcher, S ... | P30ES025128, P42ES027704, P42ES027704, P42ES031009, P42ES031009, T32ES007329 | Environ Sci Technol (2022 Mar 15) |
35175744
|
2022 |
| Race and smoking status associated with paclitaxel drug response in patient-derived lymphoblastoid c ... | Akhtari, Farida S; Havener, Tammy M; Hertz, Daniel L; Ash, Jeremy; Larson, Alexandra; Carey, L ... | T32ES007329 | Pharmacogenet Genomics (2021 Feb 01) |
32941389
|
2021 |
| Risk Characterization of Environmental Samples Using In Vitro Bioactivity and Polycyclic Aromatic Hy ... | Chen, Zunwei; Lloyd, Dillon; Zhou, Yi-Hui; Chiu, Weihsueh A; Wright, Fred A; Rusyn, Ivan | P30ES029067, P42ES027704, P42ES027704, T32ES007329 | Toxicol Sci (2021 01 06) |
33165562
|
2021 |
| Classification of estrogenic compounds by coupling high content analysis and machine learning algori ... | Mukherjee, Rajib; Beykal, Burcu; Szafran, Adam T; Onel, Melis; Stossi, Fabio; Mancini, Maureen ... | P42ES027704, P42ES027704, T32ES007329 | PLoS Comput Biol (2020 09) |
32970665
|
2020 |
| Equiprobable discrete models of site-specific substitution rates underestimate the extent of rate va ... | Mannino, Frank; Wisotsky, Sadie; Kosakovsky Pond, Sergei L; Muse, Spencer V | T32ES007329 | PLoS One (2020) |
32119689
|
2020 |
| Synonymous Site-to-Site Substitution Rate Variation Dramatically Inflates False Positive Rates of Se ... | Wisotsky, Sadie R; Kosakovsky Pond, Sergei L; Shank, Stephen D; Muse, Spencer V | T32ES007329 | Mol Biol Evol (2020 08 01) |
32068869
|
2020 |
| Cheminformatics approach to exploring and modeling trait-associated metabolite profiles. | Ash, Jeremy R; Kuenemann, Melaine A; Rotroff, Daniel; Motsinger-Reif, Alison; Fourches, Denis | T32ES007329 | J Cheminform (2019 Jun 24) |
31236709
|
2019 |
| Community assessment to advance computational prediction of cancer drug combinations in a pharmacoge ... | Menden, Michael P; Wang, Dennis; Mason, Mike J; Szalai, Bence; Bulusu, Krishna C; Guan, Yuanfa ... | T32ES007329 | Nat Commun (2019 06 17) |
31209238
|
2019 |
| Multivariate modeling of engineered nanomaterial features associated with developmental toxicity. | To, Kimberly T; Truong, Lisa; Edwards, Sabrina; Tanguay, Robert L; Reif, David M | P30ES025128, T32ES007329 | NanoImpact (2019 Apr) |
32133425
|
2019 |
| RiboStreamR: a web application for quality control, analysis, and visualization of Ribo-seq data. | Perkins, Patrick; Mazzoni-Putman, Serina; Stepanova, Anna; Alonso, Jose; Heber, Steffen | T32ES007329 | BMC Genomics (2019 Jun 06) |
31167636
|
2019 |
| Synergistic Chemotherapy Drug Response Is a Genetic Trait in Lymphoblastoid Cell Lines. | Roell, Kyle R; Havener, Tammy M; Reif, David M; Jack, John; McLeod, Howard L; Wiltshire, Tim; ... | P30ES025128, T32ES007329 | Front Genet (2019) |
31681399
|
2019 |
| Characterizing the activity of abundant, diverse and active CRISPR-Cas systems in lactobacilli. | Crawley, Alexandra B; Henriksen, Emily D; Stout, Emily; Brandt, Katelyn; Barrangou, Rodolphe | T32ES007329 | Sci Rep (2018 Aug 01) |
30068963
|
2018 |
| Characterizing the effects of missing data and evaluating imputation methods for chemical prioritiza ... | To, Kimberly T; Fry, Rebecca C; Reif, David M | P30ES025128, T32ES007329 | BioData Min (2018) |
29942350
|
2018 |
| chemmodlab: a cheminformatics modeling laboratory R package for fitting and assessing machine learni ... | Ash, Jeremy R; Hughes-Oliver, Jacqueline M | T32ES007329 | J Cheminform (2018 Nov 28) |
30488298
|
2018 |
| Confirmation of high-throughput screening data and novel mechanistic insights into VDR-xenobiotic in ... | Mahapatra, Debabrata; Franzosa, Jill A; Roell, Kyle; Kuenemann, Melaine Agnes; Houck, Keith A; ... | P30ES025128, T32ES007329 | Sci Rep (2018 Jun 11) |
29891985
|
2018 |
| Elucidating Gene-by-Environment Interactions Associated with Differential Susceptibility to Chemical ... | Balik-Meisner, Michele; Truong, Lisa; Scholl, Elizabeth H; La Du, Jane K; Tanguay, Robert L; Re ... | P30ES025128, P42ES016465, T32ES007329 | Environ Health Perspect (2018 Jun) |
29968567
|
2018 |
| Population genetic diversity in zebrafish lines. | Balik-Meisner, Michele; Truong, Lisa; Scholl, Elizabeth H; Tanguay, Robert L; Reif, David M | P30ES025128, P42ES016465, T32ES007329 | Mamm Genome (2018 02) |
29368091
|
2018 |
| ToxPi Graphical User Interface 2.0: Dynamic exploration, visualization, and sharing of integrated da ... | Marvel, Skylar W; To, Kimberly; Grimm, Fabian A; Wright, Fred A; Rusyn, Ivan; Reif, David M | P30ES025128, P42ES027704, P42ES027704, T32ES007329 | BMC Bioinformatics (2018 03 05) |
29506467
|
2018 |
| Using glycolysis enzyme sequences to inform Lactobacillus phylogeny. | Brandt, Katelyn; Barrangou, Rodolphe | T32ES007329 | Microb Genom (2018 06) |
29932393
|
2018 |
| A data-driven weighting scheme for multivariate phenotypic endpoints recapitulates zebrafish develop ... | Zhang, Guozhu; Roell, Kyle R; Truong, Lisa; Tanguay, Robert L; Reif, David M | P30ES025128, P42ES016465, T32ES007329 | Toxicol Appl Pharmacol (2017 Jan 01) |
27884602
|
2017 |
| A New Statistical Approach to Characterize Chemical-Elicited Behavioral Effects in High-Throughput S ... | Zhang, Guozhu; Truong, Lisa; Tanguay, Robert L; Reif, David M | P30ES025128, P42ES016465, T32ES007329 | PLoS One (2017) |
28099482
|
2017 |
| Characterizing the Chemical Space of ERK2 Kinase Inhibitors Using Descriptors Computed from Molecula ... | Ash, Jeremy; Fourches, Denis | T32ES007329 | J Chem Inf Model (2017 Jun 26) |
28471171
|
2017 |
| Aggregate entropy scoring for quantifying activity across endpoints with irregular correlation struc ... | Zhang, Guozhu; Marvel, Skylar; Truong, Lisa; Tanguay, Robert L; Reif, David M | P30ES025128, P42ES016465, T32ES007329 | Reprod Toxicol (2016 Jul) |
27132190
|
2016 |
| Evolutionary and Functional Diversification of the Vitamin D Receptor-Lithocholic Acid Partnership. | Kollitz, Erin M; Zhang, Guozhu; Hawkins, Mary Beth; Whitfield, G Kerr; Reif, David M; Kullman, ... | P30ES025128, T32ES007046, T32ES007329 | PLoS One (2016) |
27942020
|
2016 |
| Genetic Architecture of Domestication-Related Traits in Maize. | Xue, Shang; Bradbury, Peter J; Casstevens, Terry; Holland, James B | T32ES007329 | Genetics (2016 Sep) |
27412713
|
2016 |
| An investigation of gene-gene interactions in dose-response studies with Bayesian nonparametrics. | Beam, Andrew L; Motsinger-Reif, Alison A; Doyle, Jon | T32ES007329 | BioData Min (2015) |
25691918
|
2015 |
| Molecular cloning, functional characterization, and evolutionary analysis of vitamin D receptors iso ... | Kollitz, Erin M; Zhang, Guozhu; Hawkins, Mary Beth; Whitfield, G Kerr; Reif, David M; Kullman, ... | P30ES025128, T32ES007046, T32ES007329 | PLoS One (2015) |
25855982
|
2015 |
| Bayesian neural networks for detecting epistasis in genetic association studies. | Beam, Andrew L; Motsinger-Reif, Alison; Doyle, Jon | T32ES007329 | BMC Bioinformatics (2014) |
25413600
|
2014 |
| Mapping epistatic quantitative trait loci. | Laurie, Cecelia; Wang, Shengchu; Carlini-Garcia, Luciana Aparecida; Zeng, Zhao-Bang | T32ES007329 | BMC Genet (2014 Nov 04) |
25367219
|
2014 |
| Mobyle SNAP Workbench: a web-based analysis portal for population genetics and evolutionary genomics ... | Monacell, James T; Carbone, Ignazio | T32ES007329 | Bioinformatics (2014 May 15) |
24489366
|
2014 |
| Structural properties of the minimum cut of partially-supplied graphs. | Griffing, Alexander R; Lynch, Benjamin R; Stone, Eric A | T32ES007329 | Discrete Appl Math (2014 Nov 20) |
25400306
|
2014 |
| An eigenvector interlacing property of graphs that arise from trees by Schur complementation of the ... | Griffing, Alexander R; Lynch, Benjamin R; Stone, Eric A | T32ES007329 | Linear Algebra Appl (2013 Feb 01) |
23378671
|
2013 |
| High-throughput RNA sequencing of pseudomonas-infected Arabidopsis reveals hidden transcriptome comp ... | Howard, Brian E; Hu, Qiwen; Babaoglu, Ahmet Can; Chandra, Manan; Borghi, Monica; Tan, Xiaoping ... | T32ES007329 | PLoS One (2013) |
24098335
|
2013 |
| A genome-wide association analysis of temozolomide response using lymphoblastoid cell lines shows a ... | Brown, Chad C; Havener, Tammy M; Medina, Marisa W; Auman, J Todd; Mangravite, Lara M; Krauss, ... | T32ES007329 | Pharmacogenet Genomics (2012 Nov) |
23047291
|
2012 |
| Confidence interval of the likelihood ratio associated with mixed stain DNA evidence. | Beecham, Gary W; Weir, Bruce S | T32ES007329 | J Forensic Sci (2011 Jan) |
21198611
|
2011 |
| Ex-Vivo Modeling for Heritability Assessment and Genetic Mapping in Pharmacogenomics. | Motsinger-Reif, Alison; Brown, Chad; Havener, Tammy; Hardison, Nicholas; Peters, Eric; Beam, A ... | T32ES007329 | Proc Am Stat Assoc (2011 Jul-Aug) |
30627054
|
2011 |
| Genomic profiling in CEPH cell lines distinguishes between the camptothecins and indenoisoquinolines ... | Watson, Venita Gresham; Hardison, Nicholas E; Harris, Tyndall; Motsinger-Reif, Alison; McLeod, ... | T32ES007329 | Mol Cancer Ther (2011 Oct) |
21750217
|
2011 |
| Identification and replication of loci involved in camptothecin-induced cytotoxicity using CEPH pedi ... | Watson, Venita Gresham; Motsinger-Reif, Alison; Hardison, Nicholas E; Peters, Eric J; Havener, ... | T32ES007329 | PLoS One (2011 May 05) |
21573211
|
2011 |
| Optimization of nonlinear dose- and concentration-response models utilizing evolutionary computation ... | Beam, Andrew L; Motsinger-Reif, Alison A | T32ES007329 | Dose Response (2011) |
22013401
|
2011 |
| Pharmacogenomic characterization of US FDA-approved cytotoxic drugs. | Peters, Eric J; Motsinger-Reif, Alison; Havener, Tammy M; Everitt, Lorraine; Hardison, Nicholas ... | T32ES007329 | Pharmacogenomics (2011 Oct) |
22008047
|
2011 |
| Synthesizing and databasing fossil calibrations: divergence dating and beyond. | Ksepka, Daniel T; Benton, Michael J; Carrano, Matthew T; Gandolfo, Maria A; Head, Jason J; Herm ... | T32ES007329 | Biol Lett (2011 Dec 23) |
21525049
|
2011 |
| Amide isosteres of oroidin: assessment of antibiofilm activity and C. elegans toxicity. | Richards, Justin J; Reyes, Samuel; Stowe, Sean D; Tucker, Ashley T; Ballard, T Eric; Mathies, ... | T32ES007329 | J Med Chem (2009 Aug 13) |
19719234
|
2009 |
| From classical genetics to quantitative genetics to systems biology: modeling epistasis. | Aylor, David L; Zeng, Zhao-Bang | T32ES007329 | PLoS Genet (2008 Mar 14) |
18369448
|
2008 |
| eQTL Viewer: visualizing how sequence variation affects genome-wide transcription. | Zou, Wei; Aylor, David L; Zeng, Zhao-Bang | T32ES007329 | BMC Bioinformatics (2007 Jan 09) |
17212828
|
2007 |
| Evaluation of DNA pooling for the estimation of microsatellite allele frequencies: a case study usin ... | Skalski, Garrick T; Couch, Charlene R; Garber, Amber F; Weir, Bruce S; Sullivan, Craig V | T32ES007329 | Genetics (2006 Jun) |
16582444
|
2006 |
| SNAP: Combine and Map modules for multilocus population genetic analysis. | Aylor, David L; Price, Eric W; Carbone, Ignazio | T32ES007329 | Bioinformatics (2006 Jun 01) |
16601003
|
2006 |
| The diffusive spread of alleles in heterogeneous populations. | Skalski, Garrick T | T32ES007329 | Evolution (2004 Mar) |
15119431
|
2004 |