| Project Title: | THE WASHU TARGET ENVIRONMENTAL EPIGENOMICS DATA COORDINATION CENTER |
|---|---|
| PI: | Wang, Ting |
| Institution: | Washington University |
| Grant Number: | U24ES026699 |
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| Publication Title | Authors | Grant Number(s) | Journal (Pub date) | PubMed Link | Pub Year |
|---|---|---|---|---|---|
| Transcript assembly improves expression quantification of transposable elements in single-cell RNA-s ... | Shao, Wanqing; Wang, Ting | U24ES026699 | Genome Res (2021 Jan) |
33355230
|
2021 |
| A map of cis-regulatory elements and 3D genome structures in zebrafish. | Yang, Hongbo; Luan, Yu; Liu, Tingting; Lee, Hyung Joo; Fang, Li; Wang, Yanli; Wang, Xiaotao; ... | U24ES026699 | Nature (2020 12) |
33239788
|
2020 |
| An Evolutionary Insertion in the Mxra8 Receptor-Binding Site Confers Resistance to Alphavirus Infect ... | Kim, Arthur S; Zimmerman, Ofer; Fox, Julie M; Nelson, Christopher A; Basore, Katherine; Zhang, ... | U24ES026699 | Cell Host Microbe (2020 03 11) |
32075743
|
2020 |
| Cell-type-specific 3D epigenomes in the developing human cortex. | Song, Michael; Pebworth, Mark-Phillip; Yang, Xiaoyu; Abnousi, Armen; Fan, Changxu; Wen, Jia; R ... | U24ES026699 | Nature (2020 Nov) |
33057195
|
2020 |
| Cellular diversity of the regenerating caudal fin. | Hou, Yiran; Lee, Hyung Joo; Chen, Yujie; Ge, Jiaxin; Osman, Fujr Osman Ibrahim; McAdow, Anthon ... | U24ES026699 | Sci Adv (2020 Aug) |
32851162
|
2020 |
| Co-opted transposons help perpetuate conserved higher-order chromosomal structures. | Choudhary, Mayank Nk; Friedman, Ryan Z; Wang, Julia T; Jang, Hyo Sik; Zhuo, Xiaoyu; Wang, Ting | U24ES026699 | Genome Biol (2020 01 24) |
31973766
|
2020 |
| Comparison of differential accessibility analysis strategies for ATAC-seq data. | Gontarz, Paul; Fu, Shuhua; Xing, Xiaoyun; Liu, Shaopeng; Miao, Benpeng; Bazylianska, Viktoriia ... | U24ES026699 | Sci Rep (2020 06 23) |
32576878
|
2020 |
| DeepH&M: Estimating single-CpG hydroxymethylation and methylation levels from enrichment and restric ... | He, Yu; Jang, Hyo Sik; Xing, Xiaoyun; Li, Daofeng; Vasek, Michael J; Dougherty, Joseph D; Wang ... | U24ES026699 | Sci Adv (2020 Jul) |
32937429
|
2020 |
| Derivation of trophoblast stem cells from naïve human pluripotent stem cells. | Dong, Chen; Beltcheva, Mariana; Gontarz, Paul; Zhang, Bo; Popli, Pooja; Fischer, Laura A; Khan ... | U24ES026699 | Elife (2020 Feb 12) |
32048992
|
2020 |
| Epigenomic differences in the human and chimpanzee genomes are associated with structural variation. | Zhuo, Xiaoyu; Du, Alan Y; Pehrsson, Erica C; Li, Daofeng; Wang, Ting | U24ES026699 | Genome Res (2020 Dec 10) |
33303495
|
2020 |
| Epigenomics and genotype-phenotype association analyses reveal conserved genetic architecture of com ... | Liu, Shuli; Yu, Ying; Zhang, Shengli; Cole, John B; Tenesa, Albert; Wang, Ting; McDaneld, Tar ... | U24ES026699 | BMC Biol (2020 07 03) |
32620158
|
2020 |
| Exploring the coronavirus pandemic with the WashU Virus Genome Browser. | Flynn, Jennifer A; Purushotham, Deepak; Choudhary, Mayank N K; Zhuo, Xiaoyu; Fan, Changxu; Matt ... | U24ES026699 | Nat Genet (2020 10) |
32908257
|
2020 |
| Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and ... | Lee, Hyung Joo; Hou, Yiran; Chen, Yujie; Dailey, Zea Z; Riddihough, Aiyana; Jang, Hyo Sik; Wan ... | U24ES026699 | Genome Biol (2020 02 27) |
32106888
|
2020 |
| Requisite Chromatin Remodeling for Myeloid and Erythroid Lineage Differentiation from Erythromyeloid ... | Wu, Jun; Krchma, Karen; Lee, Hyung Joo; Prabhakar, Sairam; Wang, Xiaoli; Zhao, Haiyong; Xing, ... | U24ES026699 | Cell Rep (2020 Nov 17) |
33207205
|
2020 |
| Robust principal component analysis for accurate outlier sample detection in RNA-Seq data. | Chen, Xiaoying; Zhang, Bo; Wang, Ting; Bonni, Azad; Zhao, Guoyan | U24ES026699 | BMC Bioinformatics (2020 Jun 29) |
32600248
|
2020 |
| The qBED track: a novel genome browser visualization for point processes. | Moudgil, Arnav; Li, Daofeng; Hsu, Silas; Purushotham, Deepak; Wang, Ting; Mitra, Robi D | U24ES026699 | Bioinformatics (2020 Sep 17) |
32941613
|
2020 |
| Tissue-specific usage of transposable element-derived promoters in mouse development. | Miao, Benpeng; Fu, Shuhua; Lyu, Cheng; Gontarz, Paul; Wang, Ting; Zhang, Bo | U24ES026699 | Genome Biol (2020 09 28) |
32988383
|
2020 |
| A non-randomized procedure for large-scale heterogeneous multiple discrete testing based on randomiz ... | Dai, Xiaoyu; Lin, Nan; Li, Daofeng; Wang, Ting | U24ES026699 | Biometrics (2019 06) |
30387496
|
2019 |
| Epigenetic dysregulation of enhancers in neurons is associated with Alzheimer's disease pathology an ... | Li, Peipei; Marshall, Lee; Oh, Gabriel; Jakubowski, Jennifer L; Groot, Daniel; He, Yu; Wang, ... | U24ES026699 | Nat Commun (2019 05 21) |
31113950
|
2019 |
| FeatSNP: An Interactive Database for Brain-Specific Epigenetic Annotation of Human SNPs. | Ma, Chun-Yu; Madden, Pamela; Gontarz, Paul; Wang, Ting; Zhang, Bo | U24ES026699 | Front Genet (2019) |
31001319
|
2019 |
| The epigenomic landscape of transposable elements across normal human development and anatomy. | Pehrsson, Erica C; Choudhary, Mayank N K; Sundaram, Vasavi; Wang, Ting | U24ES026699 | Nat Commun (2019 12 10) |
31822674
|
2019 |
| Transposable elements drive widespread expression of oncogenes in human cancers. | Jang, Hyo Sik; Shah, Nakul M; Du, Alan Y; Dailey, Zea Z; Pehrsson, Erica C; Godoy, Paula M; Zh ... | U24ES026699 | Nat Genet (2019 04) |
30926969
|
2019 |
| WashU Epigenome Browser update 2019. | Li, Daofeng; Hsu, Silas; Purushotham, Deepak; Sears, Renee L; Wang, Ting | U24ES026699 | Nucleic Acids Res (2019 07 02) |
31165883
|
2019 |
| A high-fat diet alters genome-wide DNA methylation and gene expression in SM/J mice. | Keleher, Madeline Rose; Zaidi, Rabab; Hicks, Lauren; Shah, Shyam; Xing, Xiaoyun; Li, Daofeng; ... | U24ES026699 | BMC Genomics (2018 Dec 07) |
30526554
|
2018 |
| Characterization of a Mouse Model of Börjeson-Forssman-Lehmann Syndrome. | Cheng, Cheng; Deng, Pan-Yue; Ikeuchi, Yoshiho; Yuede, Carla; Li, Daofeng; Rensing, Nicholas; H ... | U24ES026699 | Cell Rep (2018 11 06) |
30403997
|
2018 |
| Comprehensive Whole DNA Methylome Analysis by Integrating MeDIP-seq and MRE-seq. | Xing, Xiaoyun; Zhang, Bo; Li, Daofeng; Wang, Ting | U24ES026699 | Methods Mol Biol (2018) |
29224147
|
2018 |
| Genome-wide association study identifies a novel locus for cannabis dependence. | Agrawal, A; Chou, Y-L; Carey, C E; Baranger, D A A; Zhang, B; Sherva, R; Wetherill, L; Kapoor ... | U24ES026699 | Mol Psychiatry (2018 05) |
29112194
|
2018 |
| Genome-wide DNA methylation profiling of primary colorectal laterally spreading tumors identifies di ... | Zhu, Liangliang; Yan, Feihu; Wang, Zhen; Dong, Haiyan; Bian, Chengling; Wang, Ting; Yu, Enda; ... | U24ES026699 | Int J Cancer (2018 11 15) |
30183087
|
2018 |
| Long-Term In Vitro Expansion of Epithelial Stem Cells Enabled by Pharmacological Inhibition of PAK1- ... | Zhang, Chengkang; Lee, Hyung Joo; Shrivastava, Anura; Wang, Ruipeng; McQuiston, Travis J; Chall ... | U24ES026699 | Cell Rep (2018 10 16) |
30332641
|
2018 |
| Soluble inflammatory mediators induce transcriptional re-organization that is independent of dna met ... | Jiang, Kaiyu; Wong, Laiping; Chen, Yanmin; Xing, Xiaoyun; Li, Daofeng; Wang, Ting; Jarvis, Ja ... | U24ES026699 | J Reprod Immunol (2018 08) |
29800761
|
2018 |
| The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chr ... | Wang, Yanli; Song, Fan; Zhang, Bo; Zhang, Lijun; Xu, Jie; Kuang, Da; Li, Daofeng; Choudhary, ... | U24ES026699 | Genome Biol (2018 10 04) |
30286773
|
2018 |
| The NIEHS TaRGET II Consortium and environmental epigenomics. | Wang, Ting; Pehrsson, Erica C; Purushotham, Deepak; Li, Daofeng; Zhuo, Xiaoyu; Zhang, Bo; Laws ... | P30ES013508, P30ES017885, P30ES025128, R01ES028802, R01ES028802, R01ES028802, R01ES028802, U01ES026697, U01ES026717, U01ES026719, U24ES026699 | Nat Biotechnol (2018 03 06) |
29509741
|
2018 |
| Transposable Element Mediated Innovation in Gene Regulatory Landscapes of Cells: Re-Visiting the "Ge ... | Sundaram, Vasavi; Wang, Ting | U24ES026699 | Bioessays (2018 Jan) |
29206283
|
2018 |
| DNA methyltransferase 3b regulates articular cartilage homeostasis by altering metabolism. | Shen, Jie; Wang, Cuicui; Li, Daofeng; Xu, Taotao; Myers, Jason; Ashton, John M; Wang, Ting; Z ... | U24ES026699 | JCI Insight (2017 Jun 15) |
28614801
|
2017 |
| DNMT and HDAC inhibitors induce cryptic transcription start sites encoded in long terminal repeats. | Brocks, David; Schmidt, Christopher R; Daskalakis, Michael; Jang, Hyo Sik; Shah, Nakul M; Li, ... | U24ES026699 | Nat Genet (2017 Jul) |
28604729
|
2017 |
| EpiCompare: an online tool to define and explore genomic regions with tissue or cell type-specific e ... | He, Yu; Wang, Ting | U24ES026699 | Bioinformatics (2017 Oct 15) |
28605501
|
2017 |
| Epigenomic annotation of noncoding mutations identifies mutated pathways in primary liver cancer. | Lowdon, Rebecca F; Wang, Ting | U24ES026699 | PLoS One (2017) |
28333948
|
2017 |
| ETV2/ER71 regulates hematopoietic regeneration by promoting hematopoietic stem cell proliferation. | Xu, Can-Xin; Lee, Tae-Jin; Sakurai, Nagisa; Krchma, Karen; Liu, Fang; Li, Daofeng; Wang, Ting ... | U24ES026699 | J Exp Med (2017 06 05) |
28461595
|
2017 |
| Functional cis-regulatory modules encoded by mouse-specific endogenous retrovirus. | Sundaram, Vasavi; Choudhary, Mayank N K; Pehrsson, Erica; Xing, Xiaoyun; Fiore, Christopher; Pa ... | U24ES026699 | Nat Commun (2017 03 28) |
28348391
|
2017 |
| MicroRNAs Induce a Permissive Chromatin Environment that Enables Neuronal Subtype-Specific Reprogram ... | Abernathy, Daniel G; Kim, Woo Kyung; McCoy, Matthew J; Lake, Allison M; Ouwenga, Rebecca; Lee, ... | U24ES026699 | Cell Stem Cell (2017 09 07) |
28886366
|
2017 |
| Tissue-specific DNA methylation is conserved across human, mouse, and rat, and driven by primary seq ... | Zhou, Jia; Sears, Renee L; Xing, Xiaoyun; Zhang, Bo; Li, Daofeng; Rockweiler, Nicole B; Jang, ... | U24ES026699 | BMC Genomics (2017 Sep 12) |
28899353
|
2017 |
| Uncovering the transcriptomic and epigenomic landscape of nicotinic receptor genes in non-neuronal t ... | Zhang, Bo; Madden, Pamela; Gu, Junchen; Xing, Xiaoyun; Sankar, Savita; Flynn, Jennifer; Kroll, ... | U24ES026699 | BMC Genomics (2017 06 05) |
28583088
|
2017 |
| Whole-Genome DNA Methylation Profiling Identifies Epigenetic Signatures of Uterine Carcinosarcoma. | Li, Jing; Xing, Xiaoyun; Li, Daofeng; Zhang, Bo; Mutch, David G; Hagemann, Ian S; Wang, Ting | U24ES026699 | Neoplasia (2017 02) |
28088687
|
2017 |
| Inhibition of DNA Methyltransferases Blocks Mutant Huntingtin-Induced Neurotoxicity. | Pan, Yanchun; Daito, Takuji; Sasaki, Yo; Chung, Yong Hee; Xing, Xiaoyun; Pondugula, Santhi; Sw ... | U24ES026699 | Sci Rep (2016 08 12) |
27516062
|
2016 |