| Project Title: | WEST COAST METABOLOMICS CENTER FOR COMPOUND IDENTIFICATION |
|---|---|
| PI: | Fiehn, Oliver |
| Institution: | University Of California At Davis |
| Grant Number: | U2CES030158 |
These search results have not been confirmed by NIEHS and are therefore, not official. They are to be used only for general information and to inform the public and grantees on the breadth of research funded by NIEHS.
Viewing 63 publications
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| Publication Title | Authors | Grant Number(s) | Journal (Pub date) | PubMed Link | Pub Year |
|---|---|---|---|---|---|
| Application of Machine Learning to Metabolomic Profile Characterization in Glioblastoma Patients Und ... | Aboud, Orwa; Liu, Yin Allison; Fiehn, Oliver; Brydges, Christopher; Fragoso, Ruben; Lee, Han S ... | U2CES030158 | Metabolites (2023 Feb 17) |
36837918
|
2023 |
| Assessing the impact of boldine on the gastrocnemius using multiomics profiling at 7 and 28 days pos ... | Potter, Luke A; Toro, Carlos A; Harlow, Lauren; Lavin, Kaleen M; Cardozo, Christopher P; Wende, ... | U2CES030158 | Physiol Genomics (2023 Jul 01) |
37125768
|
2023 |
| Automatic Assignment of Molecular Ion Species to Elemental Formulas in Gas Chromatography/Methane Ch ... | Wang, Shunyang; Valdiviez, Luis; Ye, Honglian; Fiehn, Oliver | U2CES030158 | Metabolites (2023 Aug 19) |
37623905
|
2023 |
| Boldine Alters Serum Lipidomic Signatures after Acute Spinal Cord Transection in Male Mice. | Graham, Zachary A; Siedlik, Jacob A; Toro, Carlos A; Harlow, Lauren; Cardozo, Christopher P | U2CES030158 | Int J Environ Res Public Health (2023 Aug 17) |
37623175
|
2023 |
| Cellular transformation promotes the incorporation of docosahexaenoic acid into the endolysosome-spe ... | Berg, Anastasia L; Showalter, Megan R; Kosaisawe, Nont; Hu, Michelle; Stephens, Nathanial C; Sa ... | U2CES030158 | Cancer Lett (2023 Mar 31) |
36773796
|
2023 |
| Comparison of Plasma Metabolome Response to Diets Enriched in Soybean and Partially-Hydrogenated Soy ... | Huang, Neil K; Lichtenstein, Alice H; Matuszek, Gregory; Matthan, Nirupa R | U2CES030158 | Metabolites (2023 Mar 26) |
37110133
|
2023 |
| Denoising Autoencoder Normalization for Large-Scale Untargeted Metabolomics by Gas Chromatography-Ma ... | Zhang, Ying; Fan, Sili; Wohlgemuth, Gert; Fiehn, Oliver | U2CES030158 | Metabolites (2023 Aug 13) |
37623887
|
2023 |
| Differences in the Stool Metabolome between Vegans and Omnivores: Analyzing the NIST Stool Reference ... | Cumeras, Raquel; Shen, Tong; Valdiviez, Luis; Tippins, Zakery; Haffner, Bennett D; Fiehn, Oliv ... | U2CES030158 | Metabolites (2023 Aug 07) |
37623865
|
2023 |
| Flash entropy search to query all mass spectral libraries in real time. | Li, Yuanyue; Fiehn, Oliver | U2CES030158 | Nat Methods (2023 Oct) |
37735567
|
2023 |
| Profile Characterization of Biogenic Amines in Glioblastoma Patients Undergoing Standard-of-Care Tre ... | Aboud, Orwa; Liu, Yin; Dahabiyeh, Lina; Abuaisheh, Ahmad; Li, Fangzhou; Aboubechara, John Paul ... | U2CES030158 | Biomedicines (2023 Aug 13) |
37626757
|
2023 |
| Sexual Dimorphism of the Mouse Plasma Metabolome Is Associated with Phenotypes of 30 Gene Knockout L ... | Zhang, Ying; Barupal, Dinesh K; Fan, Sili; Gao, Bei; Zhu, Chao; Flenniken, Ann M; McKerlie, C ... | U2CES030158 | Metabolites (2023 Aug 15) |
37623890
|
2023 |
| SMetaS: A Sample Metadata Standardizer for Metabolomics. | Bremer, Parker Ladd; Fiehn, Oliver | U2CES030158 | Metabolites (2023 Aug 12) |
37623884
|
2023 |
| The BinDiscover database: a biology-focused meta-analysis tool for 156,000 GC-TOF MS metabolome samp ... | Bremer, Parker Ladd; Wohlgemuth, Gert; Fiehn, Oliver | U2CES030158 | J Cheminform (2023 Jul 20) |
37475020
|
2023 |
| Acyl-CoA Identification in Mouse Liver Samples Using the In Silico CoA-Blast Tandem Mass Spectral Li ... | Keshet, Uri; Kind, Tobias; Lu, Xinchen; Devi, Sarita; Fiehn, Oliver | U2CES030158 | Anal Chem (2022 Feb 15) |
35119811
|
2022 |
| Beyond the Ground State: Predicting Electron Ionization Mass Spectra Using Excited-State Molecular D ... | Wang, Shunyang; Kind, Tobias; Bremer, Parker Ladd; Tantillo, Dean J; Fiehn, Oliver | U2CES030158 | J Chem Inf Model (2022 Sep 26) |
36107950
|
2022 |
| Effects of Lean Pork on Microbiota and Microbial-Metabolite Trimethylamine-N-Oxide: A Randomized Con ... | Dhakal, Samitinjaya; Moazzami, Zahra; Perry, Cydne; Dey, Moul | U2CES030158 | Mol Nutr Food Res (2022 May) |
35182101
|
2022 |
| Evaluating the Accuracy of the QCEIMS Approach for Computational Prediction of Electron Ionization M ... | Lee, Jesi; Kind, Tobias; Tantillo, Dean Joseph; Wang, Lee-Ping; Fiehn, Oliver | U2CES030158 | Metabolites (2022 Jan 12) |
35050190
|
2022 |
| Glutathione deficiency decreases lipid droplet stores and increases reactive oxygen species in mouse ... | Malott, Kelli F; Reshel, Samantha; Ortiz, Laura; Luderer, Ulrike | R01ES020454, R01ES020454, U2CES030158 | Biol Reprod (2022 Jun 13) |
35238901
|
2022 |
| How Well Can We Predict Mass Spectra from Structures? Benchmarking Competitive Fragmentation Modelin ... | Bremer, Parker Ladd; Vaniya, Arpana; Kind, Tobias; Wang, Shunyang; Fiehn, Oliver | U2CES030158 | J Chem Inf Model (2022 Sep 12) |
36043939
|
2022 |
| Lipidomics of cyclophosphamide 4-hydroxylation in patients receiving post-transplant cyclophosphamid ... | Navarro, Sandi L; Zheng, Zihan; Randolph, Timothy W; Nakamura, Ryotaro; Sandmaier, Brenda M; Ho ... | U2CES030158 | Clin Transl Sci (2022 Nov) |
36088654
|
2022 |
| Methods to capture proteomic and metabolomic signatures from cerebrospinal fluid and serum of health ... | Lilley, Laura M; Sanche, Steven; Moore, Shepard C; Salemi, Michelle R; Vu, Dung; Iyer, Sriniva ... | U2CES030158 | Sci Rep (2022 Aug 03) |
35922450
|
2022 |
| Mouse models of NADK2 deficiency analyzed for metabolic and gene expression changes to elucidate pat ... | Murray, G C; Bais, P; Hatton, C L; Tadenev, A L D; Hoffmann, B R; Stodola, T J; Morelli, K H; ... | U2CES030158 | Hum Mol Genet (2022 Nov 28) |
35796562
|
2022 |
| Pharmacometabonomic association of cyclophosphamide 4-hydroxylation in hematopoietic cell transplant ... | McCune, Jeannine S; Nakamura, Ryotaro; O'Meally, Denis; Randolph, Timothy W; Sandmaier, Brenda ... | U2CES030158 | Clin Transl Sci (2022 May) |
35106927
|
2022 |
| Plasma Metabolite Profiles Following Consumption of Animal Protein and Soybean-Based Diet in Hyperch ... | Huang, Neil K; Matthan, Nirupa R; Matuszek, Gregory; Lichtenstein, Alice H | U2CES030158 | Metabolites (2022 Feb 25) |
35323651
|
2022 |
| Plasma Metabolite Response to Simple, Refined and Unrefined Carbohydrate-Enriched Diets in Older Adu ... | Huang, Neil K; Matthan, Nirupa R; Matuszek, Gregory; Lichtenstein, Alice H | U2CES030158 | Metabolites (2022 Jun 15) |
35736480
|
2022 |
| Quantum Chemical Prediction of Electron Ionization Mass Spectra of Trimethylsilylated Metabolites. | Wang, Shunyang; Kind, Tobias; Bremer, Parker Ladd; Tantillo, Dean J; Fiehn, Oliver | U2CES030158 | Anal Chem (2022 Jan 25) |
35006668
|
2022 |
| SS-31 does not prevent or reduce muscle atrophy 7 days after a 65 kdyne contusion spinal cord injury ... | Graham, Zachary A; DeBerry, Jennifer J; Cardozo, Christopher P; Bamman, Marcas M | U2CES030158 | Physiol Rep (2022 May) |
35611788
|
2022 |
| A metabolome atlas of the aging mouse brain. | Ding, Jun; Ji, Jian; Rabow, Zachary; Shen, Tong; Folz, Jacob; Brydges, Christopher R; Fan, Si ... | U2CES030158 | Nat Commun (2021 Oct 15) |
34654818
|
2021 |
| Comparing Stable Isotope Enrichment by Gas Chromatography with Time-of-Flight, Quadrupole Time-of-Fl ... | Zhang, Ying; Gao, Bei; Valdiviez, Luis; Zhu, Chao; Gallagher, Tara; Whiteson, Katrine; Fiehn, ... | U2CES030158 | Anal Chem (2021 Feb 02) |
33434014
|
2021 |
| Comprehensive metabolomic study of the response of HK-2 cells to hyperglycemic hypoxic diabetic-like ... | Valdés, Alberto; Lucio-Cazaña, Francisco J; Castro-Puyana, María; García-Pastor, Coral; Fiehn, ... | U2CES030158 | Sci Rep (2021 Mar 03) |
33658594
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2021 |
| Leucoselect Phytosome Modulates Serum Eicosapentaenoic Acid, Docosahexaenoic Acid, and Prostaglandin ... | Mao, Jenny T; Xue, Bingye; Fan, Sili; Neis, Patricia; Qualls, Clifford; Massie, Larry; Fiehn, ... | U2CES030158 | Cancer Prev Res (Phila) (2021 06) |
33707173
|
2021 |
| Metabolomics of Lung Microdissections Reveals Region- and Sex-Specific Metabolic Effects of Acute Na ... | Stevens, Nathanial C; Edwards, Patricia C; Tran, Lisa M; Ding, Xinxin; Van Winkle, Laura S; Fie ... | P30ES023513, R01ES020867, T32ES007059, T32ES007091, U2CES030158 | Toxicol Sci (2021 Nov 24) |
34498071
|
2021 |
| Plasma lipidomics profile in pregnancy and gestational diabetes risk: a prospective study in a multi ... | Rahman, Mohammad L; Feng, Yen-Chen A; Fiehn, Oliver; Albert, Paul S; Tsai, Michael Y; Zhu, Yey ... | U2CES030158 | BMJ Open Diabetes Res Care (2021 03) |
33674279
|
2021 |
| Quantum Chemistry Calculations for Metabolomics. | Borges, Ricardo M; Colby, Sean M; Das, Susanta; Edison, Arthur S; Fiehn, Oliver; Kind, Tobias; ... | U2CES030158 | Chem Rev (2021 May 26) |
33979149
|
2021 |
| Spectral entropy outperforms MS/MS dot product similarity for small-molecule compound identification ... | Li, Yuanyue; Kind, Tobias; Folz, Jacob; Vaniya, Arpana; Mehta, Sajjan Singh; Fiehn, Oliver | U2CES030158 | Nat Methods (2021 Dec) |
34857935
|
2021 |
| Author Correction: Structure of human GABAB receptor in an inactive state. | Park, Jinseo; Fu, Ziao; Frangaj, Aurel; Liu, Jonathan; Mosyak, Lidia; Shen, Tong; Slavkovich, ... | U2CES030158 | Nature (2020 Jul) |
32665714
|
2020 |
| Exosomes in disease and regeneration: biological functions, diagnostics, and beneficial effects. | Lin, Yun; Anderson, Johnathon D; Rahnama, Lily M A; Gu, Shenwen V; Knowlton, Anne A | U2CES030158 | Am J Physiol Heart Circ Physiol (2020 Dec 01) |
32986962
|
2020 |
| In-Silico-Generated Library for Sensitive Detection of 2-Dimethylaminoethylamine Derivatized FAHFA L ... | Ding, Jun; Kind, Tobias; Zhu, Quan-Fei; Wang, Yu; Yan, Jing-Wen; Fiehn, Oliver; Feng, Yu-Qi | U2CES030158 | Anal Chem (2020 04 21) |
32202765
|
2020 |
| JARID1a Ablation in the Liver Alters Systemic Metabolism and Adaptation to Feeding. | DiTacchio, Kacee Ann; Kalinowska, Diana; Saran, Anand Rajamani; Byrne, Ashley; Vollmers, Christ ... | U2CES030158 | Cell Rep (2020 05 26) |
32460011
|
2020 |
| Preclinical translation of exosomes derived from mesenchymal stem/stromal cells. | Elahi, Fanny M; Farwell, D Gregory; Nolta, Jan A; Anderson, Johnathon D | U2CES030158 | Stem Cells (2020 01) |
31381842
|
2020 |
| Predicting in silico electron ionization mass spectra using quantum chemistry. | Wang, Shunyang; Kind, Tobias; Tantillo, Dean J; Fiehn, Oliver | U2CES030158 | J Cheminform (2020 Oct 20) |
33372633
|
2020 |
| Remodeling Lipids in the Transition from Chronic Liver Disease to Hepatocellular Carcinoma. | Ismail, Israa T; Elfert, Ashraf; Helal, Marwa; Salama, Ibrahim; El-Said, Hala; Fiehn, Oliver | U2CES030158 | Cancers (Basel) (2020 Dec 30) |
33396945
|
2020 |
| Retip: Retention Time Prediction for Compound Annotation in Untargeted Metabolomics. | Bonini, Paolo; Kind, Tobias; Tsugawa, Hiroshi; Barupal, Dinesh Kumar; Fiehn, Oliver | U2CES030158 | Anal Chem (2020 Jun 02) |
32390414
|
2020 |
| Structure of human GABAB receptor in an inactive state. | Park, Jinseo; Fu, Ziao; Frangaj, Aurel; Liu, Jonathan; Mosyak, Lidia; Shen, Tong; Slavkovich, ... | P30ES009089, U2CES030158 | Nature (2020 Aug) |
32581365
|
2020 |
| Sugar Alcohols Have a Key Role in Pathogenesis of Chronic Liver Disease and Hepatocellular Carcinoma ... | Ismail, Israa T; Fiehn, Oliver; Elfert, Ashraf; Helal, Marwa; Salama, Ibrahim; El-Said, Hala | U2CES030158 | Cancers (Basel) (2020 Feb 19) |
32092943
|
2020 |
| The Emerging and Diverse Roles of Bis(monoacylglycero) Phosphate Lipids in Cellular Physiology and D ... | Showalter, Megan R; Berg, Anastasia L; Nagourney, Alexander; Heil, Hailey; Carraway 3rd, Kermit ... | U2CES030158 | Int J Mol Sci (2020 Oct 29) |
33137979
|
2020 |
| Utilizing cooled liquid chromatography and chemical derivatization to separate and quantify C3-epime ... | DeFelice, Brian C; Pedersen, Theresa L; Shorrosh, Hanan; Johnson, Randi K; Seifert, Jennifer A; ... | U2CES030158 | J Steroid Biochem Mol Biol (2020 03) |
31715316
|
2020 |
| Zika Virus Infection Results in Biochemical Changes Associated With RNA Editing, Inflammatory and An ... | Onyango, Maria G; Attardo, Geoffrey M; Kelly, Erin Taylor; Bialosuknia, Sean M; Stout, Jessica; ... | U2CES030158 | Front Microbiol (2020) |
33133033
|
2020 |
| 17-α estradiol ameliorates age-associated sarcopenia and improves late-life physical function in mal ... | Garratt, Michael; Leander, Danielle; Pifer, Kaitlyn; Bower, Brian; Herrera, Jonathan J; Day, S ... | U2CES030158 | Aging Cell (2019 04) |
30740872
|
2019 |
| A Comprehensive Plasma Metabolomics Dataset for a Cohort of Mouse Knockouts within the International ... | Barupal, Dinesh K; Zhang, Ying; Shen, Tong; Fan, Sili; Roberts, Bryan S; Fitzgerald, Patrick; ... | U2CES030158 | Metabolites (2019 May 22) |
31121816
|
2019 |
| Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approac ... | Barupal, Dinesh Kumar; Fiehn, Oliver | U2CES030158 | Environ Health Perspect (2019 09) |
31557052
|
2019 |
| Inborn Errors of Metabolism in the Era of Untargeted Metabolomics and Lipidomics. | Ismail, Israa T; Showalter, Megan R; Fiehn, Oliver | U2CES030158 | Metabolites (2019 Oct 21) |
31640247
|
2019 |
| Metabolomics Analyses of 14 Classical Neurotransmitters by GC-TOF with LC-MS Illustrates Secretion o ... | Hook, Vivian; Kind, Tobias; Podvin, Sonia; Palazoglu, Mine; Tran, Carol; Toneff, Thomas; Samra ... | U2CES030158 | ACS Chem Neurosci (2019 03 20) |
30698015
|
2019 |
| Primed mesenchymal stem cells package exosomes with metabolites associated with immunomodulation. | Showalter, Megan R; Wancewicz, Benjamin; Fiehn, Oliver; Archard, Joehleen A; Clayton, Shannon; ... | U2CES030158 | Biochem Biophys Res Commun (2019 05 14) |
30926165
|
2019 |
| Rapid LC-MS/MS quantification of cancer related acetylated polyamines in human biofluids. | DeFelice, Brian C; Fiehn, Oliver | U2CES030158 | Talanta (2019 May 01) |
30683386
|
2019 |
| Serum and urinary metabolomics and outcomes in cirrhosis. | Bajaj, Jasmohan S; Fan, Sili; Thacker, Leroy R; Fagan, Andrew; Gavis, Edith; White, Melanie B; ... | U2CES030158 | PLoS One (2019) |
31560724
|
2019 |
| Sets of coregulated serum lipids are associated with Alzheimer's disease pathophysiology. | Barupal, Dinesh Kumar; Baillie, Rebecca; Fan, Sili; Saykin, Andrew J; Meikle, Peter J; Arnold, ... | U2CES030158 | Alzheimers Dement (Amst) (2019 Dec) |
31517024
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2019 |
| Structure Annotation of All Mass Spectra in Untargeted Metabolomics. | Blaženović, Ivana; Kind, Tobias; Sa, Michael R; Ji, Jian; Vaniya, Arpana; Wancewicz, Benjamin; ... | U2CES030158 | Anal Chem (2019 02 05) |
30608141
|
2019 |
| Systematic Error Removal Using Random Forest for Normalizing Large-Scale Untargeted Lipidomics Data. | Fan, Sili; Kind, Tobias; Cajka, Tomas; Hazen, Stanley L; Tang, W H Wilson; Kaddurah-Daouk, Rim ... | U2CES030158 | Anal Chem (2019 03 05) |
30758187
|
2019 |
| Distinctive Patterns of Flavonoid Biosynthesis in Roots and Nodules of Datisca glomerata and Medicag ... | Gifford, Isaac; Battenberg, Kai; Vaniya, Arpana; Wilson, Alex; Tian, Li; Fiehn, Oliver; Berry, ... | U2CES030158 | Front Plant Sci (2018) |
30364174
|
2018 |
| Diversity of Neuropeptide Cell-Cell Signaling Molecules Generated by Proteolytic Processing Revealed ... | Hook, Vivian; Lietz, Christopher B; Podvin, Sonia; Cajka, Tomas; Fiehn, Oliver | U2CES030158 | J Am Soc Mass Spectrom (2018 May) |
29667161
|
2018 |
| Integrating bioinformatics approaches for a comprehensive interpretation of metabolomics datasets. | Barupal, Dinesh Kumar; Fan, Sili; Fiehn, Oliver | U2CES030158 | Curr Opin Biotechnol (2018 12) |
29413745
|
2018 |
| Environmental Tobacco Smoke Alters Metabolic Systems in Adult Rats. | Barupal, Dinesh K; Pinkerton, Kent E; Hood, Carol; Kind, Tobias; Fiehn, Oliver | P30ES023513, U2CES030158 | Chem Res Toxicol (2016 11 21) |
27788581
|
2016 |