Title: DNA-methylation profiling distinguishes malignant melanomas from benign nevi.

Authors: Conway, Kathleen; Edmiston, Sharon N; Khondker, Zakaria S; Groben, Pamela A; Zhou, Xin; Chu, Haitao; Kuan, Pei Fen; Hao, Honglin; Carson, Craig; Berwick, Marianne; Olilla, David W; Thomas, Nancy E

Published In Pigment Cell Melanoma Res, (2011 Apr)

Abstract: DNA methylation, an epigenetic alteration typically occurring early in cancer development, could aid in the molecular diagnosis of melanoma. We determined technical feasibility for high-throughput DNA-methylation array-based profiling using formalin-fixed paraffin-embedded tissues for selection of candidate DNA-methylation differences between melanomas and nevi. Promoter methylation was evaluated in 27 common benign nevi and 22 primary invasive melanomas using a 1505 CpG site microarray. Unsupervised hierarchical clustering distinguished melanomas from nevi; 26 CpG sites in 22 genes were identified with significantly different methylation levels between melanomas and nevi after adjustment for age, sex, and multiple comparisons and with ýý-value differences of ýýý 0.2. Prediction analysis for microarrays identified 12 CpG loci that were highly predictive of melanoma, with area under the receiver operating characteristic curves of > 0.95. Of our panel of 22 genes, 14 were statistically significant in an independent sample set of 29 nevi (including dysplastic nevi) and 25 primary invasive melanomas after adjustment for age, sex, and multiple comparisons. This first report of a DNA-methylation signature discriminating melanomas from nevi indicates that DNA methylation appears promising as an additional tool for enhancing melanoma diagnosis.

PubMed ID: 21375697

MeSH Terms: No MeSH terms associated with this publication