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Who We Fund: Publications associated with Basic Cellular And Molecular Research - Basic Cellular or Molecular processes

These search results have not been confirmed by NIEHS and are therefore, not official. They are to be used only for general information and to inform the public and grantees on the breadth of research funded by NIEHS.

Viewing 29 publications
Export to Excel (http://www.niehs.nih.gov//portfolio/index.cfm/portfolio/sciencecodepubs/sc/01/topic/1/format/excel)
Publication Title Authors Grant Number(s) Journal (Pub date) PubMed Link Pub Year
Characterization of Arsenic-Induced Cancer Stem-Like Cells.   Chang, Qingshan; Bi, Zhuoyue; Fu, Yao; Rice, M' Kya Anique; Zhang, Qian; Wadgaonkar, Priya; Al ... R01ES028263, R01ES028335 Methods Mol Biol (2020) 31960388 Exiting the NIEHS site 2020 
ChExMix: A Method for Identifying and Classifying Protein-DNA Interaction Subtypes.   Yamada, Naomi; Kuntala, Prashant Kumar; Pugh, B Franklin; Mahony, Shaun R01ES013768 J Comput Biol (2020 Mar) 32023130 Exiting the NIEHS site 2020 
CRISPR-Cas9 gene editing causes alternative splicing of the targeting mRNA.   Zhang, Qian; Fu, Yao; Thakur, Chitra; Bi, Zhuoyue; Wadgaonkar, Priya; Qiu, Yiran; Xu, Liping; ... P30ES020957, R01ES028263, R01ES028335 Biochem Biophys Res Commun (2020 Jul 12) 32460957 Exiting the NIEHS site 2020 
Expanding Role of Ubiquitin in Translational Control.   Dougherty, Shannon E; Maduka, Austin O; Inada, Toshifumi; Silva, Gustavo M R00ES025835 Int J Mol Sci (2020 Feb 09) 32050486 Exiting the NIEHS site 2020 
N6-methyladenosine of chromosome-associated regulatory RNA regulates chromatin state and transcripti ...   Liu, Jun; Dou, Xiaoyang; Chen, Chuanyuan; Chen, Chuan; Liu, Chang; Xu, Meng Michelle; Zhao, S ... R01ES030546 Science (2020 01 31) 31949099 Exiting the NIEHS site 2020 
Nrf2 and HIF1α converge to arsenic-induced metabolic reprogramming and the formation of the cancer s ...   Bi, Zhuoyue; Zhang, Qian; Fu, Yao; Wadgaonkar, Priya; Zhang, Wenxuan; Almutairy, Bandar; Xu, ... P30ES020957, R01ES028263, R01ES028335 Theranostics (2020) 32226544 Exiting the NIEHS site 2020 
Characterizing protein-DNA binding event subtypes in ChIP-exo data.   Yamada, Naomi; Lai, William K M; Farrell, Nina; Pugh, B Franklin; Mahony, Shaun R01ES013768 Bioinformatics (2019 03 15) 30165373 Exiting the NIEHS site 2019 
Connections between metabolism and epigenetics in cancers.   Thakur, Chitra; Chen, Fei R01ES028263, R01ES028335 Semin Cancer Biol (2019 08) 31185282 Exiting the NIEHS site 2019 
Linking metabolism to epigenetics in stem cells and cancer stem cells.   Chen, Fei P30ES020957, R01ES028263, R01ES028335 Semin Cancer Biol (2019 08) 31078639 Exiting the NIEHS site 2019 
m6A mRNA demethylase FTO regulates melanoma tumorigenicity and response to anti-PD-1 blockade.   Yang, Seungwon; Wei, Jiangbo; Cui, Yan-Hong; Park, Gayoung; Shah, Palak; Deng, Yu; Aplin, And ... P30ES027792, R01ES024373, R01ES030546, R01ES030576 Nat Commun (2019 06 25) 31239444 Exiting the NIEHS site 2019 
Metabolic and epigenetic reprogramming in the arsenic-induced cancer stem cells.   Li, Lingzhi; Bi, Zhuoyue; Wadgaonkar, Priya; Lu, Yongju; Zhang, Qian; Fu, Yao; Thakur, Chitra ... P30ES020957, R01ES028263, R01ES028335 Semin Cancer Biol (2019 08) 31009762 Exiting the NIEHS site 2019 
Polyubiquitin Chains Linked by Lysine Residue 48 (K48) Selectively Target Oxidized Proteins In Vivo.   Manohar, Sandhya; Jacob, Samson; Wang, Jade; Wiechecki, Keira A; Koh, Hiromi W L; Simões, Vane ... R00ES025835 Antioxid Redox Signal (2019 11 20) 31482721 Exiting the NIEHS site 2019 
Site-Specific K63 Ubiquitinomics Provides Insights into Translation Regulation under Stress.   Back, Songhee; Gorman, Andrew W; Vogel, Christine; Silva, Gustavo M R00ES025835 J Proteome Res (2019 01 04) 30489083 Exiting the NIEHS site 2019 
Genome-wide determinants of sequence-specific DNA binding of general regulatory factors.   Rossi, Matthew J; Lai, William K M; Pugh, B Franklin R01ES013768 Genome Res (2018 04) 29563167 Exiting the NIEHS site 2018 
Genome-Wide Mapping of Decay Factor-mRNA Interactions in Yeast Identifies Nutrient-Responsive Transc ...   Miller, Jason E; Zhang, Liye; Jiang, Haoyang; Li, Yunfei; Pugh, B Franklin; Reese, Joseph C R01ES013768 G3 (Bethesda) (2018 01 04) 29158339 Exiting the NIEHS site 2018 
In vivo genome-wide binding interactions of mouse and human constitutive androstane receptors reveal ...   Niu, Ben; Coslo, Denise M; Bataille, Alain R; Albert, Istvan; Pugh, B Franklin; Omiecinski, Cu ... R01ES013768 Nucleic Acids Res (2018 09 19) 30102401 Exiting the NIEHS site 2018 
Simplified ChIP-exo assays.   Rossi, Matthew J; Lai, William K M; Pugh, B Franklin R01ES013768 Nat Commun (2018 07 20) 30030442 Exiting the NIEHS site 2018 
Widespread and precise reprogramming of yeast protein-genome interactions in response to heat shock.   Vinayachandran, Vinesh; Reja, Rohit; Rossi, Matthew J; Park, Bongsoo; Rieber, Lila; Mittal, Ch ... R01ES013768 Genome Res (2018 Feb 14) 29444801 Exiting the NIEHS site 2018 
Protein-DNA binding in high-resolution.   Mahony, Shaun; Pugh, B Franklin R01ES013768 Crit Rev Biochem Mol Biol (2015) 26038153 Exiting the NIEHS site 2015 
A comprehensive and high-resolution genome-wide response of p53 to stress.   Chang, Gue Su; Chen, Xiangyun Amy; Park, Bongsoo; Rhee, Ho Sung; Li, Pingxin; Han, Kang Hoo; M ... R01ES013768 Cell Rep (2014 Jul 24) 25043190 Exiting the NIEHS site 2014 
A genome-wide map of CTCF multivalency redefines the CTCF code.   Nakahashi, Hirotaka; Kieffer Kwon, Kyong-Rim; Resch, Wolfgang; Vian, Laura; Dose, Marei; Stavre ... R01ES013768 Cell Rep (2013 May 30) 23707059 Exiting the NIEHS site 2013 
Kinetic competition between elongation rate and binding of NELF controls promoter-proximal pausing.   Li, Jian; Liu, Yingyun; Rhee, Ho Sung; Ghosh, Saikat Kumar B; Bai, Lu; Pugh, B Franklin; Gilmo ... R01ES013768 Mol Cell (2013 Jun 6) 23746353 Exiting the NIEHS site 2013 
ChIP-exo method for identifying genomic location of DNA-binding proteins with near-single-nucleotide ...   Rhee, Ho Sung; Pugh, B Franklin R01ES013768 Curr Protoc Mol Biol (2012 Oct) 23026909 Exiting the NIEHS site 2012 
A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces.   Venters, Bryan J; Wachi, Shinichiro; Mavrich, Travis N; Andersen, Barbara E; Jena, Peony; Sinna ... R01ES013768 Mol Cell (2011 Feb 18) 21329885 Exiting the NIEHS site 2011 
Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution.   Rhee, Ho Sung; Pugh, B Franklin R01ES013768 Cell (2011 Dec 9) 22153082 Exiting the NIEHS site 2011 
Sequential recruitment of SAGA and TFIID in a genomic response to DNA damage in Saccharomyces cerevi ...   Ghosh, Sujana; Pugh, B Franklin R01ES013768 Mol Cell Biol (2011 Jan) 20956559 Exiting the NIEHS site 2011 
Genome-wide modeling of transcription preinitiation complex disassembly mechanisms using ChIP-chip d ...   Samorodnitsky, Eric; Pugh, B Franklin R01ES013768 PLoS Comput Biol (2010 Apr 01) 20369017 Exiting the NIEHS site 2010 
A canonical promoter organization of the transcription machinery and its regulators in the Saccharom ...   Venters, Bryan J; Pugh, B Franklin R01ES013768 Genome Res (2009 Mar) 19124666 Exiting the NIEHS site 2009 
How eukaryotic genes are transcribed.   Venters, Bryan J; Pugh, B Franklin R01ES013768 Crit Rev Biochem Mol Biol (2009 Jun) 19514890 Exiting the NIEHS site 2009 
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