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Who We Fund: Publications associated with Application Of Technology To Disease - Toxicogenomics Technology

These search results have not been confirmed by NIEHS and are therefore, not official. They are to be used only for general information and to inform the public and grantees on the breadth of research funded by NIEHS.

Viewing 41 publications
Export to Excel (http://www.niehs.nih.gov//portfolio/index.cfm/portfolio/sciencecodepubs/sc/82/topic/82/format/excel)
Publication Title Authors Grant Number(s) Journal (Pub date) PubMed Link Pub Year
Beyond the looking glass: recent advances in understanding the impact of environmental exposures on ...   Hollander, Jonathan A; Cory-Slechta, Deborah A; Jacka, Felice N; Szabo, Steven T; Guilarte, Tom ... P30ES025128, R01ES006189, R01ES014065 Neuropsychopharmacology (2020 Jun) 32109936 Exiting the NIEHS site 2020 
Integration of curated and high-throughput screening data to elucidate environmental influences on d ...   Kosnik, Marissa B; Planchart, Antonio; Marvel, Skylar W; Reif, David M; Mattingly, Carolyn J P30ES025128, R01ES014065, R56ES030007, T32ES007046 Comput Toxicol (2019 Nov) 31453412 Exiting the NIEHS site 2019 
The Comparative Toxicogenomics Database: update 2019.   Davis, Allan Peter; Grondin, Cynthia J; Johnson, Robin J; Sciaky, Daniela; McMorran, Roy; Wiege ... P30ES025128, R01ES014065 Nucleic Acids Res (2019 01 08) 30247620 Exiting the NIEHS site 2019 
Accessing an Expanded Exposure Science Module at the Comparative Toxicogenomics Database.   Grondin, Cynthia J; Davis, Allan Peter; Wiegers, Thomas C; Wiegers, Jolene A; Mattingly, Caroly ... P30ES025128, R01ES014065 Environ Health Perspect (2018 01 18) 29351546 Exiting the NIEHS site 2018 
Chemical-Induced Phenotypes at CTD Help Inform the Predisease State and Construct Adverse Outcome Pa ...   Davis, Allan Peter; Wiegers, Thomas C; Wiegers, Jolene; Johnson, Robin J; Sciaky, Daniela; Gron ... P30ES025128, R01ES014065 Toxicol Sci (2018 09 01) 29846728 Exiting the NIEHS site 2018 
Heavy Metal Exposure and Metabolic Syndrome: Evidence from Human and Model System Studies.   Planchart, Antonio; Green, Adrian; Hoyo, Cathrine; Mattingly, Carolyn J P30ES025128, R01ES014065, T32ES007046 Curr Environ Health Rep (2018 03) 29460222 Exiting the NIEHS site 2018 
Applying evolutionary genetics to developmental toxicology and risk assessment.   Leung, Maxwell C K; Procter, Andrew C; Goldstone, Jared V; Foox, Jonathan; DeSalle, Robert; Mat ... P42ES007381, R01ES014065, R01ES025748, R01ES025748, R01ES025748 Reprod Toxicol (2017 04) 28267574 Exiting the NIEHS site 2017 
Informatics and Data Analytics to Support Exposome-Based Discovery for Public Health.   Manrai, Arjun K; Cui, Yuxia; Bushel, Pierre R; Hall, Molly; Karakitsios, Spyros; Mattingly, Ca ... P30ES007048, R01ES014065 Annu Rev Public Health (2017 Mar 20) 28068484 Exiting the NIEHS site 2017 
The Comparative Toxicogenomics Database: update 2017.   Davis, Allan Peter; Grondin, Cynthia J; Johnson, Robin J; Sciaky, Daniela; King, Benjamin L; Mc ... R01ES014065 Nucleic Acids Res (2017 Jan 04) 27651457 Exiting the NIEHS site 2017 
Advancing Exposure Science through Chemical Data Curation and Integration in the Comparative Toxicog ...   Grondin, Cynthia J; Davis, Allan Peter; Wiegers, Thomas C; King, Benjamin L; Wiegers, Jolene A; ... P30ES025128, R01ES014065 Environ Health Perspect (2016 Oct) 27170236 Exiting the NIEHS site 2016 
Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chem ...   Wei, Chih-Hsuan; Peng, Yifan; Leaman, Robert; Davis, Allan Peter; Mattingly, Carolyn J; Li, Ji ... R01ES014065 Database (Oxford) (2016) 26994911 Exiting the NIEHS site 2016 
BioCreative V CDR task corpus: a resource for chemical disease relation extraction.   Li, Jiao; Sun, Yueping; Johnson, Robin J; Sciaky, Daniela; Wei, Chih-Hsuan; Leaman, Robert; Da ... R01ES014065 Database (Oxford) (2016) 27161011 Exiting the NIEHS site 2016 
Generating Gene Ontology-Disease Inferences to Explore Mechanisms of Human Disease at the Comparativ ...   Davis, Allan Peter; Wiegers, Thomas C; King, Benjamin L; Wiegers, Jolene; Grondin, Cynthia J; S ... P30ES025128, R01ES014065 PLoS One (2016) 27171405 Exiting the NIEHS site 2016 
Laying a Community-Based Foundation for Data-Driven Semantic Standards in Environmental Health Scien ...   Mattingly, Carolyn J; Boyles, Rebecca; Lawler, Cindy P; Haugen, Astrid C; Dearry, Allen; Haende ... R01ES014065 Environ Health Perspect (2016 08) 26871594 Exiting the NIEHS site 2016 
ToxEvaluator: an integrated computational platform to aid the interpretation of toxicology study-rel ...   Pelletier, D; Wiegers, T C; Enayetallah, A; Kibbey, C; Gosink, M; Koza-Taylor, P; Mattingly, ... R01ES014065 Database (Oxford) (2016) 27161010 Exiting the NIEHS site 2016 
The Comparative Toxicogenomics Database's 10th year anniversary: update 2015.   Davis, Allan Peter; Grondin, Cynthia J; Lennon-Hopkins, Kelley; Saraceni-Richards, Cynthia; Scia ... R01ES014065 Nucleic Acids Res (2015 Jan) 25326323 Exiting the NIEHS site 2015 
BioC interoperability track overview.   Comeau, Donald C; Batista-Navarro, Riza Theresa; Dai, Hong-Jie; Doğan, Rezarta Islamaj; Yepes, ... R01ES014065 Database (Oxford) (2014) 24980129 Exiting the NIEHS site 2014 
Web services-based text-mining demonstrates broad impacts for interoperability and process simplific ...   Wiegers, Thomas C; Davis, Allan Peter; Mattingly, Carolyn J R01ES014065 Database (Oxford) (2014) 24919658 Exiting the NIEHS site 2014 
A CTD-Pfizer collaboration: manual curation of 88,000 scientific articles text mined for drug-diseas ...   Davis, Allan Peter; Wiegers, Thomas C; Roberts, Phoebe M; King, Benjamin L; Lay, Jean M; Lennon ... R01ES014065 Database (Oxford) (2013) 24288140 Exiting the NIEHS site 2013 
Text mining effectively scores and ranks the literature for improving chemical-gene-disease curation ...   Davis, Allan Peter; Wiegers, Thomas C; Johnson, Robin J; Lay, Jean M; Lennon-Hopkins, Kelley; S ... R01ES014065 PLoS One (2013) 23613709 Exiting the NIEHS site 2013 
The Comparative Toxicogenomics Database: update 2013.   Davis, Allan Peter; Murphy, Cynthia Grondin; Johnson, Robin; Lay, Jean M; Lennon-Hopkins, Kelle ... R01ES014065 Nucleic Acids Res (2013 Jan) 23093600 Exiting the NIEHS site 2013 
Aquatic models, genomics and chemical risk management.   Cheng, Keith C; Hinton, David E; Mattingly, Carolyn J; Planchart, Antonio P42ES010356, R01ES014065 Comp Biochem Physiol C Toxicol Pharmacol (2012 Jan) 21763781 Exiting the NIEHS site 2012 
Collaborative biocuration--text-mining development task for document prioritization for curation.   Wiegers, Thomas C; Davis, Allan Peter; Mattingly, Carolyn J R01ES014065 Database (Oxford) (2012) 23180769 Exiting the NIEHS site 2012 
Disease model curation improvements at Mouse Genome Informatics.   Bello, Susan M; Richardson, Joel E; Davis, Allan P; Wiegers, Thomas C; Mattingly, Carolyn J; Do ... R01ES014065 Database (Oxford) (2012) 22434831 Exiting the NIEHS site 2012 
MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database.   Davis, Allan Peter; Wiegers, Thomas C; Rosenstein, Michael C; Mattingly, Carolyn J R01ES014065 Database (Oxford) (2012) 22434833 Exiting the NIEHS site 2012 
Ranking transitive chemical-disease inferences using local network topology in the comparative toxic ...   King, Benjamin L; Davis, Allan Peter; Rosenstein, Michael C; Wiegers, Thomas C; Mattingly, Caro ... R01ES014065 PLoS One (2012) 23144783 Exiting the NIEHS site 2012 
Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Dat ...   Davis, Allan Peter; Johnson, Robin J; Lennon-Hopkins, Kelley; Sciaky, Daniela; Rosenstein, Mich ... R01ES014065 Database (Oxford) (2012) 23221299 Exiting the NIEHS site 2012 
Text mining for the biocuration workflow.   Hirschman, Lynette; Burns, Gully A P C; Krallinger, Martin; Arighi, Cecilia; Cohen, K Bretonnel ... R01ES014065 Database (Oxford) (2012) 22513129 Exiting the NIEHS site 2012 
DiseaseComps: a metric that discovers similar diseases based upon common toxicogenomic profiles at C ...   Davis, Allan Peter; Rosenstein, Michael C; Wiegers, Thomas Conrad; Mattingly, Carolyn J R01ES014065 Bioinformation (2011) 22125387 Exiting the NIEHS site 2011 
The Comparative Toxicogenomics Database: update 2011.   Davis, Allan Peter; King, Benjamin L; Mockus, Susan; Murphy, Cynthia G; Saraceni-Richards, Cynt ... R01ES014065 Nucleic Acids Res (2011 Jan) 20864448 Exiting the NIEHS site 2011 
The curation paradigm and application tool used for manual curation of the scientific literature at ...   Davis, Allan Peter; Wiegers, Thomas C; Rosenstein, Michael C; Murphy, Cynthia G; Mattingly, Car ... R01ES014065 Database (Oxford) (2011) 21933848 Exiting the NIEHS site 2011 
Chemical databases for environmental health and clinical research.   Mattingly, Carolyn J R01ES014065 Toxicol Lett (2009 Apr 10) 18996453 Exiting the NIEHS site 2009 
Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease ne ...   Davis, Allan Peter; Murphy, Cynthia G; Saraceni-Richards, Cynthia A; Rosenstein, Michael C; Wieg ... R01ES014065 Nucleic Acids Res (2009 Jan) 18782832 Exiting the NIEHS site 2009 
GeneComps and ChemComps: a new CTD metric to identify genes and chemicals with shared toxicogenomic ...   Davis, Allan Peter; Murphy, Cynthia G; Saraceni-Richards, Cynthia A; Rosenstein, Michael C; Wieg ... P42ES007373, R01ES014065 Bioinformation (2009 Oct 15) 20198196 Exiting the NIEHS site 2009 
Genetic and environmental pathways to complex diseases.   Gohlke, Julia M; Thomas, Reuben; Zhang, Yonqing; Rosenstein, Michael C; Davis, Allan P; Murphy, ... R01ES014065 BMC Syst Biol (2009) 19416532 Exiting the NIEHS site 2009 
Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics ...   Wiegers, Thomas C; Davis, Allan Peter; Cohen, K Bretonnel; Hirschman, Lynette; Mattingly, Carol ... R01ES014065 BMC Bioinformatics (2009 Oct 08) 19814812 Exiting the NIEHS site 2009 
The Comparative Toxicogenomics Database facilitates identification and understanding of chemical-gen ...   Davis, Allan P; Murphy, Cynthia G; Rosenstein, Michael C; Wiegers, Thomas C; Mattingly, Carolyn ... R01ES014065 BMC Med Genomics (2008 Oct 09) 18845002 Exiting the NIEHS site 2008 
The Comparative Toxicogenomics Database (CTD): a resource for comparative toxicological studies.   Mattingly, C J; Rosenstein, M C; Colby, G T; Forrest Jr, J N; Boyer, J L R01ES014065 J Exp Zool A Comp Exp Biol (2006 Sep 01) 16902965 Exiting the NIEHS site 2006 
The comparative toxicogenomics database: a cross-species resource for building chemical-gene interac ...   Mattingly, Carolyn J; Rosenstein, Michael C; Davis, Allan Peter; Colby, Glenn T; Forrest Jr, Jo ... R01ES014065 Toxicol Sci (2006 Aug) 16675512 Exiting the NIEHS site 2006 
The Comparative Toxicogenomics Database (CTD).   Mattingly, Carolyn J; Colby, Glenn T; Forrest, John N; Boyer, James L R01ES014065 Environ Health Perspect (2003 May) 12760826 Exiting the NIEHS site 2003 
Green fluorescent protein (GFP) as a marker of aryl hydrocarbon receptor (AhR) function in developin ...   Mattingly, C J; McLachlan, J A; Toscano Jr, W A R01ES014065 Environ Health Perspect (2001 Aug) 11564622 Exiting the NIEHS site 2001 
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