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National Institute of Environmental Health Sciences

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Your Environment. Your Health.

Datasets: University of California-Berkeley

Superfund Research Program

Toxic Substances in the Environment

Center Director: Martyn T. Smith
Grant Number: P42ES004705
Funding Period: 1987-2027
View this project in the NIH Research Portfolio Online Reporting Tools (RePORT)

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Datasets

Total number of records: 64

Dataset Title Data Types Data Repository
A surge of DNA damage links transcriptional reprogramming and hematopoietic deficit in Fanconi anemia Gene Expression Gene Expression Omnibus (GEO)
Applying genome-wide CRISPR to identify known and novel genes and pathways that modulate formaldehyde toxicity CRISPR Screen Data, Source code, Underlying data from publication Open Science Framework (OSF)
Applying genome-wide CRISPR to identify known and novel genes and pathways that modulate formaldehyde toxicity. CRISPR Screen Data Open Repository of CRISPR Screens (BioGRID ORCS)
Characterization of four TCE-dechlorinating microbial enrichments grown with different cobalamin stress and methanogenic conditions Gene Expression Gene Expression Omnibus (GEO)
Chronic academic stress increases a group of microRNAs in peripheral blood Gene Expression Gene Expression Omnibus (GEO)
Comparative Genomics of D. ethenogenes 195 and an Unsequenced Dehalococcoides-Containing Enrichment Culture Gene Expression Gene Expression Omnibus (GEO)
Corrinoid salvaging and remodeling by Dehalococcoides mccartyi strain 195 in a defined consortium containing a corrinoid-producer Pelosinus fermentans strain R7 Gene Expression Gene Expression Omnibus (GEO)
Data from: High throughput functional genomics identifies modulators of TCE metabolite genotoxicity and candidate susceptibility genes Gene Expression Dryad
Dehalococcoides ethenogenes strain 195 1.6K Gene Expression Gene Expression Omnibus (GEO)
Dehalococcoides mccartyi strain 11a5 putative reductive dehalogenase gene, complete cds Nucleotide Sequence GenBank
Dehalococcoides mccartyi strain 11a5 TceA gene, complete cds Nucleotide Sequence GenBank
Dehalococcoides sp. 11a 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Dehalococcoides sp. 11a putative reductive dehalogenase (rdhA7) gene, partial cds Nucleotide Sequence GenBank
Dehalococcoides sp. 11a5 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Dehalococcoides sp. ANAS1 reductive dehalogenase (tceA) gene, complete cds Nucleotide Sequence GenBank
Dehalococcoides sp. ANAS2 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Dehalococcoides sp. ANAS2 reductive dehalogenase VcrA (vcrA) gene, complete cds Nucleotide Sequence GenBank
Development of a Fluorescence-Activated Cell Sorting Method Coupled with Whole Genome Amplification To Analyze Minority and Trace Dehalococcoides Genomes in Microbial Communities Gene Expression Gene Expression Omnibus (GEO)
Differential gene expression of dechlorinating communities with Dehalococcoides mccartyi species Gene Expression Gene Expression Omnibus (GEO)
Epigenome-wide association studies of occupational exposure to benzene and formaldehyde Code GitHub
Exposure to arsenic at different life-stages and DNA methylation meta-analysis in buccal cells and leukocytes Code GitHub
Expression data of pediatric B-cell acute leukemias Gene Expression Gene Expression Omnibus (GEO)
Functional profiling in yeast with arsenite and monomethylarsonous acid Gene Expression Gene Expression Omnibus (GEO)
Functional profiling in yeast with the benzene metabolites hydroquinone, catechol and 1,2,4-benzenetriol Gene Expression Gene Expression Omnibus (GEO)
Functional profiling in yeast with zinc-limitation Gene Expression Gene Expression Omnibus (GEO)
Gene expression in benzene-exposed workers Gene Expression Gene Expression Omnibus (GEO)
Gene expression on 144 arrays representing 125 workers exposed to a range of benzene exposures Gene Expression Gene Expression Omnibus (GEO)
HSA01A032 CLONTECH cDNA library CCRF-CEM, cat# HL1063g Homo sapiens cDNA clone 01A03, mRNA sequence Nucleotide Sequence GenBank
Human DNA from cosmid MMDA from chromosome 19q13.3 (obtained by automated sequence analysis) Nucleotide Sequence GenBank
Isolation of two new Dehalococcoides mccartyi strains with dissimilar dechlorination functions and their characterization by comparative genomics via microarray analysis Gene Expression Gene Expression Omnibus (GEO)
Methylation data of pediatric B-cell acute leukemias Gene Expression Gene Expression Omnibus (GEO)
Micropterus salmoides cytochrome P450 2N14 mRNA, complete cds Nucleotide Sequence GenBank
Micropterus salmoides cytochrome P450 2P11 mRNA, complete cds Nucleotide Sequence GenBank
Micropterus salmoides cytochrome P450 3A68 mRNA, complete cds Nucleotide Sequence GenBank
Micropterus salmoides cytochrome P450 3A69 mRNA, complete cds Nucleotide Sequence GenBank
nCounter analysis of mRNAs associated with occupational benzene exposure using a Nanostring custom assay Gene Expression Gene Expression Omnibus (GEO)
Pelosinus sp. enrichment culture clone 014 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Pseudonocardia dioxanivorans 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Pseudonocardia dioxanivorans strain CB1190 during growth on THF or succinate Gene Expression Gene Expression Omnibus (GEO)
Pseudonocardia dioxanivorans strain CB1190 during growth with H2/bicarbonate or pyruvate Gene Expression Gene Expression Omnibus (GEO)
Rhodococcus sp. RHA1 grown on propane versus pyruvate Gene Expression Gene Expression Omnibus (GEO)
Saccharomyces cerevisiae clone pJDY40 signal recognition particle protein (srp14) gene, complete cds Nucleotide Sequence GenBank
Saccharomyces cerevisiae clone pJDY61 signal recognition protein (SRP72) gene, complete cds Nucleotide Sequence GenBank
Saccharomyces cerevisiae clone pJDY74 signal recognition particle (SRP68) gene, complete cds Nucleotide Sequence GenBank
Saccharomyces cerevisiae S288C Ipl1p protein kinase (IPL1) gene, complete cds Nucleotide Sequence GenBank
Sporotalea sp. enrichment culture clone 102 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and proteomic analysis Gene Expression Gene Expression Omnibus (GEO)
Temporal microarray analysis of Dehalococcoides ethenogenes during the transition into the stationary phase Gene Expression Gene Expression Omnibus (GEO)
The design and validation of a Dehalococcoides genus microarray and its application to two newly isolated Dehalococcoides strains for comparative genomics Gene Expression Gene Expression Omnibus (GEO)
Two-Track Epigenetic Remodeling and Backtracking to Embryonic Stem Cell Bivalency in B-cell Acute Lymphoblastic Leukemias Gene Expression Gene Expression Omnibus (GEO)
Uncultured bacterium clone LAC1 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Uncultured bacterium clone LAC2 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Uncultured bacterium clone LAC3 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Uncultured bacterium clone LAC4 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Uncultured bacterium clone LAC5 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Uncultured bacterium clone LAC6 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Uncultured bacterium clone LAC7 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Uncultured bacterium clone LAC8 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Uncultured Dehalococcoides sp. clone FtL-RDase-1618 reductive dehalogenase and putative reductive dehalogenase anchoring protein mRNA, partial cds Nucleotide Sequence GenBank
Uncultured Dehalococcoides sp. clone FtL-RDase-1638 reductive dehalogenase and putative reductive dehalogenase anchoring protein mRNA, partial cds Nucleotide Sequence GenBank
Uncultured Dehalococcoides sp. clone FtL-RDase-bvcA reductive dehalogenase and putative reductive dehalogenase anchoring protein mRNA, partial cds Nucleotide Sequence GenBank
Uncultured Dehalococcoides sp. clone FtL-RDase-vcrA reductive dehalogenase and putative reductive dehalogenase anchoring protein mRNA, partial cds Nucleotide Sequence GenBank
Unidentified bacterium clone GM23 dinitrogenase reductase (nifH) gene, partial cds Nucleotide Sequence GenBank
WGBS data of pediatric B-cell acute leukemias Gene Expression Gene Expression Omnibus (GEO)

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