Project Title: | ENVIRONMENTAL DNA LESIONS AND MUTAGENESIS: MOLECULAR MECHANISMS OF LESION RECOGNITION FOR REPAIR AND POLYMERASE BYPASS |
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PI: | Broyde, Suse |
Institution: | New York University |
Grant Number: | R01ES025987 |
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Publication Title | Authors | Grant Number(s) | Journal (Pub date) | PubMed Link | Pub Year |
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Variable Inhibition of DNA Unwinding Rates Catalyzed by the SARS-CoV-2 Helicase Nsp13 by Structurall ... | Sales, Ana H; Fu, Iwen; Durandin, Alexander; Ciervo, Sam; Lupoli, Tania J; Shafirovich, Vladim ... | R01ES025987 | Int J Mol Sci (2024 Jul 19) |
39063172
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2024 |
Differing structures and dynamics of two photolesions portray verification differences by the human ... | Fu, Iwen; Geacintov, Nicholas E; Broyde, Suse | R01ES025987 | Nucleic Acids Res (2023 Dec 11) |
37933861
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2023 |
Inhibition of E. coli RecQ Helicase Activity by Structurally Distinct DNA Lesions: Structure-Functio ... | Sales, Ana H; Zheng, Vincent; Kenawy, Maya A; Kakembo, Mark; Zhang, Lu; Shafirovich, Vladimir; ... | R01ES025987 | Int J Mol Sci (2022 Dec 09) |
36555294
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2022 |
Mechanism of lesion verification by the human XPD helicase in nucleotide excision repair. | Fu, Iwen; Mu, Hong; Geacintov, Nicholas E; Broyde, Suse | R01ES025987 | Nucleic Acids Res (2022 Jul 08) |
35713557
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2022 |
Impact of DNA sequences on DNA 'opening' by the Rad4/XPC nucleotide excision repair complex. | Paul, Debamita; Mu, Hong; Tavakoli, Amirrasoul; Dai, Qing; Chakraborty, Sagnik; He, Chuan; Ans ... | R01ES025987 | DNA Repair (Amst) (2021 Nov) |
34428697
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2021 |
Light-induced modulation of DNA recognition by the Rad4/XPC damage sensor protein. | Tavakoli, Amirrasoul; Paul, Debamita; Mu, Hong; Kuchlyan, Jagannath; Baral, Saroj; Ansari, Anj ... | R01ES025987 | RSC Chem Biol (2021 Apr 01) |
34041491
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2021 |
Molecular dynamics simulations reveal how H3K56 acetylation impacts nucleosome structure to promote ... | Fu, Iwen; Geacintov, Nicholas E; Broyde, Suse | R01ES025987 | DNA Repair (Amst) (2021 Nov) |
34399316
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2021 |
Translesion Synthesis Past 5-Formylcytosine-Mediated DNA-Peptide Cross-Links by hPolη Is Dependent o ... | Thomforde, Jenna; Fu, Iwen; Rodriguez, Freddys; Pujari, Suresh S; Broyde, Suse; Tretyakova, Na ... | R01ES023350, R01ES025987 | Biochemistry (2021 06 15) |
34080848
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2021 |
Tethering-facilitated DNA 'opening' and complementary roles of β-hairpin motifs in the Rad4/XPC DNA ... | Paul, Debamita; Mu, Hong; Tavakoli, Amirrasoul; Dai, Qing; Chen, Xuejing; Chakraborty, Sagnik; ... | R01ES025987 | Nucleic Acids Res (2020 Dec 02) |
33119737
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2020 |
The DNA damage-sensing NER repair factor XPC-RAD23B does not recognize bulky DNA lesions with a miss ... | Feher, Katie M; Kolbanovskiy, Alexander; Durandin, Alexander; Shim, Yoonjung; Min, Jung-Hyun; L ... | R01ES025987 | DNA Repair (Amst) (2020 12) |
33035795
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2020 |
Variable impact of conformationally distinct DNA lesions on nucleosome structure and dynamics: Impli ... | Cai, Yuqin; Geacintov, Nicholas E; Broyde, Suse | R01ES025987 | DNA Repair (Amst) (2020 03) |
32018112
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2020 |
5-Formylcytosine-induced DNA-peptide cross-links reduce transcription efficiency, but do not cause t ... | Ji, Shaofei; Park, Daeyoon; Kropachev, Konstantin; Kolbanovskiy, Marina; Fu, Iwen; Broyde, Sus ... | R01ES023350, R01ES025987 | J Biol Chem (2019 11 29) |
31597704
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2019 |
Nucleotide Excision Repair and Impact of Site-Specific 5',8-Cyclopurine and Bulky DNA Lesions on the ... | Shafirovich, Vladimir; Kolbanovskiy, Marina; Kropachev, Konstantin; Liu, Zhi; Cai, Yuquin; Terz ... | R01ES025987 | Biochemistry (2019 Feb 12) |
30570250
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2019 |
Rotational and translational positions determine the structural and dynamic impact of a single ribon ... | Fu, Iwen; Smith, Duncan J; Broyde, Suse | R01ES025987 | DNA Repair (Amst) (2019 01) |
30522887
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2019 |
Structure and mechanism of pyrimidine-pyrimidone (6-4) photoproduct recognition by the Rad4/XPC nucl ... | Paul, Debamita; Mu, Hong; Zhao, Hong; Ouerfelli, Ouathek; Jeffrey, Philip D; Broyde, Suse; Min ... | R01ES025987 | Nucleic Acids Res (2019 07 09) |
31106376
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2019 |
Transcriptional Bypass of DNA-Protein and DNA-Peptide Conjugates by T7 RNA Polymerase. | Ji, Shaofei; Thomforde, Jenna; Rogers, Colette; Fu, Iwen; Broyde, Suse; Tretyakova, Natalia Y | R01ES023350, R01ES025987 | ACS Chem Biol (2019 12 20) |
31573793
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2019 |
5-Formylcytosine mediated DNA-protein cross-links block DNA replication and induce mutations in huma ... | Ji, Shaofei; Fu, Iwen; Naldiga, Spandana; Shao, Hongzhao; Basu, Ashis K; Broyde, Suse; Tretyak ... | R01ES023350, R01ES025987 | Nucleic Acids Res (2018 07 27) |
29905846
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2018 |
Corrigendum: 5-Formylcytosine mediated DNA-protein cross-links block DNA replication and induce muta ... | Ji, Shaofei; Fu, Iwen; Naldiga, Spandana; Shao, Hongzhao; Basu, Ashis K; Broyde, Suse; Tretyak ... | R01ES025987 | Nucleic Acids Res (2018 Oct 12) |
30184121
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2018 |
Enhanced spontaneous DNA twisting/bending fluctuations unveiled by fluorescence lifetime distributio ... | Chakraborty, Sagnik; Steinbach, Peter J; Paul, Debamita; Mu, Hong; Broyde, Suse; Min, Jung-Hyu ... | R01ES025987 | Nucleic Acids Res (2018 02 16) |
29267981
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2018 |
Lesion Sensing during Initial Binding by Yeast XPC/Rad4: Toward Predicting Resistance to Nucleotide ... | Mu, Hong; Zhang, Yingkai; Geacintov, Nicholas E; Broyde, Suse | R01ES025987 | Chem Res Toxicol (2018 11 19) |
30284444
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2018 |
Molecular basis for damage recognition and verification by XPC-RAD23B and TFIIH in nucleotide excisi ... | Mu, Hong; Geacintov, Nicholas E; Broyde, Suse; Yeo, Jung-Eun; Schärer, Orlando D | R01ES025987 | DNA Repair (Amst) (2018 11) |
30174301
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2018 |
Synergistic effects of H3 and H4 nucleosome tails on structure and dynamics of a lesion-containing D ... | Cai, Yuqin; Fu, Iwen; Geacintov, Nicholas E; Zhang, Yingkai; Broyde, Suse | R01ES025987 | DNA Repair (Amst) (2018 May) |
29631253
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2018 |
Nucleosome Histone Tail Conformation and Dynamics: Impacts of Lysine Acetylation and a Nearby Minor ... | Fu, Iwen; Cai, Yuqin; Geacintov, Nicholas E; Zhang, Yingkai; Broyde, Suse | R01ES025987 | Biochemistry (2017 Apr 11) |
28304160
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2017 |
Nucleotide Excision Repair Lesion-Recognition Protein Rad4 Captures a Pre-Flipped Partner Base in a ... | Mu, Hong; Geacintov, Nicholas E; Min, Jung-Hyun; Zhang, Yingkai; Broyde, Suse | R01ES025987 | Chem Res Toxicol (2017 Jun 19) |
28460163
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2017 |
Repair-Resistant DNA Lesions. | Geacintov, Nicholas E; Broyde, Suse | R01ES025987 | Chem Res Toxicol (2017 Aug 21) |
28750166
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2017 |
The Nonbulky DNA Lesions Spiroiminodihydantoin and 5-Guanidinohydantoin Significantly Block Human RN ... | Kolbanovskiy, Marina; Chowdhury, Moinuddin A; Nadkarni, Aditi; Broyde, Suse; Geacintov, Nichola ... | R01ES025987 | Biochemistry (2017 Jun 20) |
28514164
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2017 |
Bypass of DNA-Protein Cross-links Conjugated to the 7-Deazaguanine Position of DNA by Translesion Sy ... | Wickramaratne, Susith; Ji, Shaofei; Mukherjee, Shivam; Su, Yan; Pence, Matthew G; Lior-Hoffmann ... | R01ES023350, R01ES025987 | J Biol Chem (2016 Nov 04) |
27621316
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2016 |