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Who We Fund: Publication Detail

Project Title: INTEGRATIVE TRANSCRIPTIONAL AND EPIGENOMIC MODELING OF XENOBIOTIC-ACTIVATED GENE REGULATORY NETWORKS
PI: Bhattacharya, Sudin
Institution: Michigan State University
Grant Number: R01ES031937

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Viewing 10 publications
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Publication Title Authors Grant Number(s) Journal (Pub date) PubMed Link Pub Year
Unique challenges and best practices for single cell transcriptomic analysis in toxicology.   Filipovic, David; Kana, Omar; Marri, Daniel; Bhattacharya, Sudin P42ES004911, R01ES031937 Curr Opin Toxicol (2024 Jun) 38645720 Exiting the NIEHS site 2024 
Interpretable predictive models of genome-wide aryl hydrocarbon receptor-DNA binding reveal tissue-s ...   Filipovic, David; Qi, Wenjie; Kana, Omar; Marri, Daniel; LeCluyse, Edward L; Andersen, Melvin ... P42ES004911, R01ES031937 Toxicol Sci (2023 Nov 28) 37707797 Exiting the NIEHS site 2023 
Nickel-induced transcriptional memory in lung epithelial cells promotes interferon signaling upon ni ...   Zhang, Xiaoru; Bradford, Beatrix; Baweja, Sahdev; Tan, Taotao; Lee, Hyun-Wook; Jose, Cynthia C ... R01ES031402, R01ES031937, T32ES007324 Toxicol Appl Pharmacol (2023 Dec 15) 37951547 Exiting the NIEHS site 2023 
Prediction of mammalian tissue-specific CLOCK-BMAL1 binding to E-box DNA motifs.   Marri, Daniel; Filipovic, David; Kana, Omar; Tischkau, Shelley; Bhattacharya, Sudin R01ES031937 Sci Rep (2023 May 12) 37173345 Exiting the NIEHS site 2023 
A Negative Feedback Loop and Transcription Factor Cooperation Regulate Zonal Gene Induction by 2, 3, ...   Yang, Yongliang; Filipovic, David; Bhattacharya, Sudin R01ES031937 Hepatol Commun (2022 04) 34726355 Exiting the NIEHS site 2022 
MicroRNA-Gene Interactions Impacted by Toxic Metal(oid)s during EMT and Carcinogenesis.   Tran, Franklin; Lee, Eunji; Cuddapah, Suresh; Choi, Byeong Hyeok; Dai, Wei R01ES031402, R01ES031937 Cancers (Basel) (2022 Nov 25) 36497298 Exiting the NIEHS site 2022 
Nickel-induced alterations to chromatin structure and function.   Gaspar, Adrian Domnic; Cuddapah, Suresh R01ES031402, R01ES031937 Toxicol Appl Pharmacol (2022 Dec 15) 36400264 Exiting the NIEHS site 2022 
Oxidative stress modulates expression of immune checkpoint genes via activation of AhR signaling.   Kou, Ziyue; Yang, Rui; Lee, Eunji; Cuddapah, Suresh; Choi, Byeong Hyeok; Dai, Wei R01ES031402, R01ES031937, T32ES007324 Toxicol Appl Pharmacol (2022 Dec 15) 36368423 Exiting the NIEHS site 2022 
Pharmacokinetic and toxicodynamic concepts in idiosyncratic, drug-induced liver injury.   Roth, Robert A; Kana, Omar; Filipovic, David; Ganey, Patricia E R01ES031937, T32ES007255 Expert Opin Drug Metab Toxicol (2022) 36003040 Exiting the NIEHS site 2022 
Transcriptional repression of E-cadherin in nickel-exposed lung epithelial cells mediated by loss of ...   Zhang, Xiaoru; Tanwar, Vinay Singh; Jose, Cynthia C; Lee, Hyun-Wook; Cuddapah, Suresh R01ES031402, R01ES031937 Mol Carcinog (2022 Jan) 34727382 Exiting the NIEHS site 2022 
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