| Project Title: | INTEGRATIVE TRANSCRIPTIONAL AND EPIGENOMIC MODELING OF XENOBIOTIC-ACTIVATED GENE REGULATORY NETWORKS |
|---|---|
| PI: | Bhattacharya, Sudin |
| Institution: | Michigan State University |
| Grant Number: | R01ES031937 |
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| Publication Title | Authors | Grant Number(s) | Journal (Pub date) | PubMed Link | Pub Year |
|---|---|---|---|---|---|
| Unique challenges and best practices for single cell transcriptomic analysis in toxicology. | Filipovic, David; Kana, Omar; Marri, Daniel; Bhattacharya, Sudin | P42ES004911, R01ES031937 | Curr Opin Toxicol (2024 Jun) |
38645720
|
2024 |
| Generative modeling of single-cell gene expression for dose-dependent chemical perturbations. | Kana, Omar; Nault, Rance; Filipovic, David; Marri, Daniel; Zacharewski, Tim; Bhattacharya, Sud ... | P42ES004911, R01ES031937 | Patterns (N Y) (2023 Aug 11) |
37602218
|
2023 |
| Interpretable predictive models of genome-wide aryl hydrocarbon receptor-DNA binding reveal tissue-s ... | Filipovic, David; Qi, Wenjie; Kana, Omar; Marri, Daniel; LeCluyse, Edward L; Andersen, Melvin ... | P42ES004911, R01ES031937 | Toxicol Sci (2023 Nov 28) |
37707797
|
2023 |
| Nickel-induced transcriptional memory in lung epithelial cells promotes interferon signaling upon ni ... | Zhang, Xiaoru; Bradford, Beatrix; Baweja, Sahdev; Tan, Taotao; Lee, Hyun-Wook; Jose, Cynthia C ... | R01ES031402, R01ES031937, T32ES007324 | Toxicol Appl Pharmacol (2023 Dec 15) |
37951547
|
2023 |
| Prediction of mammalian tissue-specific CLOCK-BMAL1 binding to E-box DNA motifs. | Marri, Daniel; Filipovic, David; Kana, Omar; Tischkau, Shelley; Bhattacharya, Sudin | R01ES031937 | Sci Rep (2023 May 12) |
37173345
|
2023 |
| A Negative Feedback Loop and Transcription Factor Cooperation Regulate Zonal Gene Induction by 2, 3, ... | Yang, Yongliang; Filipovic, David; Bhattacharya, Sudin | R01ES031937 | Hepatol Commun (2022 04) |
34726355
|
2022 |
| MicroRNA-Gene Interactions Impacted by Toxic Metal(oid)s during EMT and Carcinogenesis. | Tran, Franklin; Lee, Eunji; Cuddapah, Suresh; Choi, Byeong Hyeok; Dai, Wei | R01ES031402, R01ES031937 | Cancers (Basel) (2022 Nov 25) |
36497298
|
2022 |
| Nickel-induced alterations to chromatin structure and function. | Gaspar, Adrian Domnic; Cuddapah, Suresh | R01ES031402, R01ES031937 | Toxicol Appl Pharmacol (2022 Dec 15) |
36400264
|
2022 |
| Oxidative stress modulates expression of immune checkpoint genes via activation of AhR signaling. | Kou, Ziyue; Yang, Rui; Lee, Eunji; Cuddapah, Suresh; Choi, Byeong Hyeok; Dai, Wei | R01ES031402, R01ES031937, T32ES007324 | Toxicol Appl Pharmacol (2022 Dec 15) |
36368423
|
2022 |
| Pharmacokinetic and toxicodynamic concepts in idiosyncratic, drug-induced liver injury. | Roth, Robert A; Kana, Omar; Filipovic, David; Ganey, Patricia E | R01ES031937 | Expert Opin Drug Metab Toxicol (2022) |
36003040
|
2022 |
| Transcriptional repression of E-cadherin in nickel-exposed lung epithelial cells mediated by loss of ... | Zhang, Xiaoru; Tanwar, Vinay Singh; Jose, Cynthia C; Lee, Hyun-Wook; Cuddapah, Suresh | R01ES031402, R01ES031937 | Mol Carcinog (2022 Jan) |
34727382
|
2022 |