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Who We Fund: Publications associated with Application Of Technology To Disease - Metabolomics Technology

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Viewing 124 publications
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Publication Title Authors Grant Number(s) Journal (Pub date) PubMed Link Pub Year
13C-SpaceM: Spatial single-cell isotope tracing reveals heterogeneity of de novo fatty acid synthesi ...   Buglakova, Elena; Ekelöf, Måns; Schwaiger-Haber, Michaela; Schlicker, Lisa; Molenaar, Martijn R ... R35ES028365 bioRxiv (2024 Feb 28) 38464218 Exiting the NIEHS site 2024 
Inducing vulnerability to InhA inhibition restores isoniazid susceptibility in drug-resistant Mycoba ...   Harrison, Gregory A; Wang, Erin R; Cho, Kevin; Mreyoud, Yassin; Sarkar, Souvik; Almqvist, Fred ... R35ES028365 mBio (2024 Mar 13) 38294237 Exiting the NIEHS site 2024 
metabCombiner 2.0: Disparate Multi-Dataset Feature Alignment for LC-MS Metabolomics.   Habra, Hani; Meijer, Jennifer L; Shen, Tong; Fiehn, Oliver; Gaul, David A; Fernández, Facundo ... U2CES030158 Metabolites (2024 Feb 15) 38393017 Exiting the NIEHS site 2024 
Metabolite Study and Structural Authentication for the First-in-Human Use Sphingosine-1-phosphate Re ...   Qiu, Lin; Jiang, Hao; Cho, Kevin; Yu, Yanbo; Jones, Lynne A; Huang, Tianyu; Perlmutter, Joel ... R35ES028365 ACS Chem Neurosci (2024 May 01) 38634759 Exiting the NIEHS site 2024 
Application of Machine Learning to Metabolomic Profile Characterization in Glioblastoma Patients Und ...   Aboud, Orwa; Liu, Yin Allison; Fiehn, Oliver; Brydges, Christopher; Fragoso, Ruben; Lee, Han S ... U2CES030158 Metabolites (2023 Feb 17) 36837918 Exiting the NIEHS site 2023 
Assessing the impact of boldine on the gastrocnemius using multiomics profiling at 7 and 28 days pos ...   Potter, Luke A; Toro, Carlos A; Harlow, Lauren; Lavin, Kaleen M; Cardozo, Christopher P; Wende, ... U2CES030158 Physiol Genomics (2023 Jul 01) 37125768 Exiting the NIEHS site 2023 
Automatic Assignment of Molecular Ion Species to Elemental Formulas in Gas Chromatography/Methane Ch ...   Wang, Shunyang; Valdiviez, Luis; Ye, Honglian; Fiehn, Oliver U2CES030158 Metabolites (2023 Aug 19) 37623905 Exiting the NIEHS site 2023 
Boldine Alters Serum Lipidomic Signatures after Acute Spinal Cord Transection in Male Mice.   Graham, Zachary A; Siedlik, Jacob A; Toro, Carlos A; Harlow, Lauren; Cardozo, Christopher P U2CES030158 Int J Environ Res Public Health (2023 Aug 17) 37623175 Exiting the NIEHS site 2023 
Cellular transformation promotes the incorporation of docosahexaenoic acid into the endolysosome-spe ...   Berg, Anastasia L; Showalter, Megan R; Kosaisawe, Nont; Hu, Michelle; Stephens, Nathanial C; Sa ... U2CES030158 Cancer Lett (2023 Mar 31) 36773796 Exiting the NIEHS site 2023 
Comparison of Plasma Metabolome Response to Diets Enriched in Soybean and Partially-Hydrogenated Soy ...   Huang, Neil K; Lichtenstein, Alice H; Matuszek, Gregory; Matthan, Nirupa R U2CES030158 Metabolites (2023 Mar 26) 37110133 Exiting the NIEHS site 2023 
Cytosolic and mitochondrial NADPH fluxes are independently regulated.   Niu, Xiangfeng; Stancliffe, Ethan; Gelman, Susan J; Wang, Lingjue; Schwaiger-Haber, Michaela; R ... R35ES028365 Nat Chem Biol (2023 Jul) 36973440 Exiting the NIEHS site 2023 
Denoising Autoencoder Normalization for Large-Scale Untargeted Metabolomics by Gas Chromatography-Ma ...   Zhang, Ying; Fan, Sili; Wohlgemuth, Gert; Fiehn, Oliver U2CES030158 Metabolites (2023 Aug 13) 37623887 Exiting the NIEHS site 2023 
Differences in the Stool Metabolome between Vegans and Omnivores: Analyzing the NIST Stool Reference ...   Cumeras, Raquel; Shen, Tong; Valdiviez, Luis; Tippins, Zakery; Haffner, Bennett D; Fiehn, Oliv ... U2CES030158 Metabolites (2023 Aug 07) 37623865 Exiting the NIEHS site 2023 
Effects of hepatic mitochondrial pyruvate carrier deficiency on de novo lipogenesis and gluconeogene ...   Yiew, Nicole K H; Deja, Stanislaw; Ferguson, Daniel; Cho, Kevin; Jarasvaraparn, Chaowapong; Jac ... R35ES028365 iScience (2023 Nov 17) 37942005 Exiting the NIEHS site 2023 
Effects of hepatic mitochondrial pyruvate carrier deficiency on de novo lipogenesis and glycerol-med ...   Yiew, Nicole K H; Deja, Stanislaw; Ferguson, Daniel; Cho, Kevin; Jarasvaraparn, Chaowapong; Jac ... R35ES028365 bioRxiv (2023 Aug 24) 36824879 Exiting the NIEHS site 2023 
Flash entropy search to query all mass spectral libraries in real time.   Li, Yuanyue; Fiehn, Oliver U2CES030158 Nat Methods (2023 Oct) 37735567 Exiting the NIEHS site 2023 
Hyperammonaemia disrupts daily rhythms reversibly by elevating glutamate in the central circadian pa ...   Granados-Fuentes, Daniel; Cho, Kevin; Patti, Gary J; Costa, Rodolfo; Herzog, Erik D; Montagnese ... R35ES028365 Liver Int (2023 Mar) 36367321 Exiting the NIEHS site 2023 
Inducing vulnerability to InhA inhibition restores isoniazid susceptibility in drug resistant Mycoba ...   Harrison, Gregory A; Cho, Kevin; Wang, Erin R; Sarkar, Souvik; Almqvist, Fredrik; Patti, Gary ... R35ES028365 bioRxiv (2023 Feb 07) 36798348 Exiting the NIEHS site 2023 
Mitochondrial Pyruvate Carrier Inhibition Attenuates Hepatic Stellate Cell Activation and Liver Inju ...   Habibi, Mohammad; Ferguson, Daniel; Eichler, Sophie J; Chan, Mandy M; LaPoint, Andrew; Shew, T ... R35ES028365 bioRxiv (2023 Aug 25) 36824926 Exiting the NIEHS site 2023 
MPI-VGAE: protein-metabolite enzymatic reaction link learning by variational graph autoencoders.   Wang, Cheng; Yuan, Chuang; Wang, Yahui; Chen, Ranran; Shi, Yuying; Zhang, Tao; Xue, Fuzhong; ... R35ES028365 Brief Bioinform (2023 Jul 20) 37225420 Exiting the NIEHS site 2023 
Profile Characterization of Biogenic Amines in Glioblastoma Patients Undergoing Standard-of-Care Tre ...   Aboud, Orwa; Liu, Yin; Dahabiyeh, Lina; Abuaisheh, Ahmad; Li, Fangzhou; Aboubechara, John Paul ... U2CES030158 Biomedicines (2023 Aug 13) 37626757 Exiting the NIEHS site 2023 
Sexual Dimorphism of the Mouse Plasma Metabolome Is Associated with Phenotypes of 30 Gene Knockout L ...   Zhang, Ying; Barupal, Dinesh K; Fan, Sili; Gao, Bei; Zhu, Chao; Flenniken, Ann M; McKerlie, C ... U2CES030158 Metabolites (2023 Aug 15) 37623890 Exiting the NIEHS site 2023 
SMetaS: A Sample Metadata Standardizer for Metabolomics.   Bremer, Parker Ladd; Fiehn, Oliver U2CES030158 Metabolites (2023 Aug 12) 37623884 Exiting the NIEHS site 2023 
Stromal DDR2 Promotes Ovarian Cancer Metastasis through Regulation of Metabolism and Secretion of Ex ...   Schab, Angela M; Greenwade, Molly M; Stock, Elizabeth; Lomonosova, Elena; Cho, Kevin; Grither, ... R35ES028365 Mol Cancer Res (2023 Nov 01) 37527178 Exiting the NIEHS site 2023 
The BinDiscover database: a biology-focused meta-analysis tool for 156,000 GC-TOF MS metabolome samp ...   Bremer, Parker Ladd; Wohlgemuth, Gert; Fiehn, Oliver U2CES030158 J Cheminform (2023 Jul 20) 37475020 Exiting the NIEHS site 2023 
The Warburg effect: a signature of mitochondrial overload.   Wang, Yahui; Patti, Gary J R35ES028365 Trends Cell Biol (2023 Dec) 37117116 Exiting the NIEHS site 2023 
A multidimensional metabolomics workflow to image biodistribution and evaluate pharmacodynamics in a ...   Jackstadt, Madelyn M; Chamberlain, Casey A; Doonan, Steven R; Shriver, Leah P; Patti, Gary J R35ES028365 Dis Model Mech (2022 Aug 01) 35972155 Exiting the NIEHS site 2022 
Acyl-CoA Identification in Mouse Liver Samples Using the In Silico CoA-Blast Tandem Mass Spectral Li ...   Keshet, Uri; Kind, Tobias; Lu, Xinchen; Devi, Sarita; Fiehn, Oliver U2CES030158 Anal Chem (2022 Feb 15) 35119811 Exiting the NIEHS site 2022 
An Untargeted Metabolomics Workflow that Scales to Thousands of Samples for Population-Based Studies ...   Stancliffe, Ethan; Schwaiger-Haber, Michaela; Sindelar, Miriam; Murphy, Matthew J; Soerensen, M ... R35ES028365 Anal Chem (2022 Dec 20) 36475608 Exiting the NIEHS site 2022 
Beyond the Ground State: Predicting Electron Ionization Mass Spectra Using Excited-State Molecular D ...   Wang, Shunyang; Kind, Tobias; Bremer, Parker Ladd; Tantillo, Dean J; Fiehn, Oliver U2CES030158 J Chem Inf Model (2022 Sep 26) 36107950 Exiting the NIEHS site 2022 
Combining Isotopologue Workflows and Simultaneous Multidimensional Separations to Detect, Identify, ...   Dodds, James N; Wang, Lingjue; Patti, Gary J; Baker, Erin S P30ES025128, P42ES027704, P42ES031009, P42ES031009, R35ES028365 Anal Chem (2022 Feb 08) 35089687 Exiting the NIEHS site 2022 
Effects of Lean Pork on Microbiota and Microbial-Metabolite Trimethylamine-N-Oxide: A Randomized Con ...   Dhakal, Samitinjaya; Moazzami, Zahra; Perry, Cydne; Dey, Moul U2CES030158 Mol Nutr Food Res (2022 May) 35182101 Exiting the NIEHS site 2022 
Evaluating the Accuracy of the QCEIMS Approach for Computational Prediction of Electron Ionization M ...   Lee, Jesi; Kind, Tobias; Tantillo, Dean Joseph; Wang, Lee-Ping; Fiehn, Oliver U2CES030158 Metabolites (2022 Jan 12) 35050190 Exiting the NIEHS site 2022 
GAS6-AXL Inhibition by AVB-500 Overcomes Resistance to Paclitaxel in Endometrial Cancer by Decreasin ...   Bruce, Shaina F; Cho, Kevin; Noia, Hollie; Lomonosova, Elena; Stock, Elizabeth C; Oplt, Alyssa ... R35ES028365 Mol Cancer Ther (2022 Aug 02) 35588308 Exiting the NIEHS site 2022 
Glutathione deficiency decreases lipid droplet stores and increases reactive oxygen species in mouse ...   Malott, Kelli F; Reshel, Samantha; Ortiz, Laura; Luderer, Ulrike R01ES020454, R01ES020454, U2CES030158 Biol Reprod (2022 Jun 13) 35238901 Exiting the NIEHS site 2022 
How Well Can We Predict Mass Spectra from Structures? Benchmarking Competitive Fragmentation Modelin ...   Bremer, Parker Ladd; Vaniya, Arpana; Kind, Tobias; Wang, Shunyang; Fiehn, Oliver U2CES030158 J Chem Inf Model (2022 Sep 12) 36043939 Exiting the NIEHS site 2022 
Lipidomics of cyclophosphamide 4-hydroxylation in patients receiving post-transplant cyclophosphamid ...   Navarro, Sandi L; Zheng, Zihan; Randolph, Timothy W; Nakamura, Ryotaro; Sandmaier, Brenda M; Ho ... U2CES030158 Clin Transl Sci (2022 Nov) 36088654 Exiting the NIEHS site 2022 
Methods to capture proteomic and metabolomic signatures from cerebrospinal fluid and serum of health ...   Lilley, Laura M; Sanche, Steven; Moore, Shepard C; Salemi, Michelle R; Vu, Dung; Iyer, Sriniva ... U2CES030158 Sci Rep (2022 Aug 03) 35922450 Exiting the NIEHS site 2022 
Mitochondrial pyruvate carrier inhibitors improve metabolic parameters in diet-induced obese mice.   Hodges, Wesley T; Jarasvaraparn, Chaowapong; Ferguson, Daniel; Griffett, Kristine; Gill, Lauren ... R35ES028365 J Biol Chem (2022 Feb) 34973337 Exiting the NIEHS site 2022 
Monounsaturated and Diunsaturated Fatty Acids Sensitize Cervical Cancer to Radiation Therapy.   Muhammad, Naoshad; Ruiz, Fiona; Stanley, Jennifer; Rashmi, Ramachandran; Cho, Kevin; Jayachandr ... R35ES028365 Cancer Res (2022 Dec 16) 36214635 Exiting the NIEHS site 2022 
Mouse models of NADK2 deficiency analyzed for metabolic and gene expression changes to elucidate pat ...   Murray, G C; Bais, P; Hatton, C L; Tadenev, A L D; Hoffmann, B R; Stodola, T J; Morelli, K H; ... U2CES030158 Hum Mol Genet (2022 Nov 28) 35796562 Exiting the NIEHS site 2022 
Pharmacometabonomic association of cyclophosphamide 4-hydroxylation in hematopoietic cell transplant ...   McCune, Jeannine S; Nakamura, Ryotaro; O'Meally, Denis; Randolph, Timothy W; Sandmaier, Brenda ... U2CES030158 Clin Transl Sci (2022 May) 35106927 Exiting the NIEHS site 2022 
Plasma Metabolite Profiles Following Consumption of Animal Protein and Soybean-Based Diet in Hyperch ...   Huang, Neil K; Matthan, Nirupa R; Matuszek, Gregory; Lichtenstein, Alice H U2CES030158 Metabolites (2022 Feb 25) 35323651 Exiting the NIEHS site 2022 
Plasma Metabolite Response to Simple, Refined and Unrefined Carbohydrate-Enriched Diets in Older Adu ...   Huang, Neil K; Matthan, Nirupa R; Matuszek, Gregory; Lichtenstein, Alice H U2CES030158 Metabolites (2022 Jun 15) 35736480 Exiting the NIEHS site 2022 
Quantum Chemical Prediction of Electron Ionization Mass Spectra of Trimethylsilylated Metabolites.   Wang, Shunyang; Kind, Tobias; Bremer, Parker Ladd; Tantillo, Dean J; Fiehn, Oliver U2CES030158 Anal Chem (2022 Jan 25) 35006668 Exiting the NIEHS site 2022 
Quick tips for re-using metabolomics data.   Stancliffe, Ethan; Patti, Gary J R35ES028365 Nat Cell Biol (2022 Nov) 36280705 Exiting the NIEHS site 2022 
Resistant starch type-4 intake alters circulating bile acids in human subjects.   Dhakal, Samitinjaya; Dey, Moul U2CES030158 Front Nutr (2022) 36337613 Exiting the NIEHS site 2022 
Saturation of the mitochondrial NADH shuttles drives aerobic glycolysis in proliferating cells.   Wang, Yahui; Stancliffe, Ethan; Fowle-Grider, Ronald; Wang, Rencheng; Wang, Cheng; Schwaiger-Ha ... R35ES028365 Mol Cell (2022 Sep 01) 35973426 Exiting the NIEHS site 2022 
Sex differences in brain tumor glutamine metabolism reveal sex-specific vulnerabilities to treatment ...   Sponagel, Jasmin; Jones, Jill K; Frankfater, Cheryl; Zhang, Shanshan; Tung, Olivia; Cho, Kevin ... R35ES028365 Med (2022 Nov 11) 36108629 Exiting the NIEHS site 2022 
Silencing alanine transaminase 2 in diabetic liver attenuates hyperglycemia by reducing gluconeogene ...   Martino, Michael R; Gutiérrez-Aguilar, Manuel; Yiew, Nicole K H; Lutkewitte, Andrew J; Singer, ... R35ES028365 Cell Rep (2022 Apr 26) 35476997 Exiting the NIEHS site 2022 
SS-31 does not prevent or reduce muscle atrophy 7 days after a 65 kdyne contusion spinal cord injury ...   Graham, Zachary A; DeBerry, Jennifer J; Cardozo, Christopher P; Bamman, Marcas M U2CES030158 Physiol Rep (2022 May) 35611788 Exiting the NIEHS site 2022 
Targeting fatty acid β-oxidation impairs monocyte differentiation and prolongs heart allograft survi ...   Zhu, Yuehui; Dun, Hao; Ye, Li; Terada, Yuriko; Shriver, Leah P; Patti, Gary J; Kreisel, Danie ... R35ES028365 JCI Insight (2022 Apr 08) 35239515 Exiting the NIEHS site 2022 
A metabolome atlas of the aging mouse brain.   Ding, Jun; Ji, Jian; Rabow, Zachary; Shen, Tong; Folz, Jacob; Brydges, Christopher R; Fan, Si ... U2CES030158 Nat Commun (2021 Oct 15) 34654818 Exiting the NIEHS site 2021 
A Protocol for Untargeted Metabolomic Analysis: From Sample Preparation to Data Processing.   Souza, Amanda L; Patti, Gary J R35ES028365 Methods Mol Biol (2021) 34060055 Exiting the NIEHS site 2021 
Comparing Stable Isotope Enrichment by Gas Chromatography with Time-of-Flight, Quadrupole Time-of-Fl ...   Zhang, Ying; Gao, Bei; Valdiviez, Luis; Zhu, Chao; Gallagher, Tara; Whiteson, Katrine; Fiehn, ... U2CES030158 Anal Chem (2021 Feb 02) 33434014 Exiting the NIEHS site 2021 
Comprehensive metabolomic study of the response of HK-2 cells to hyperglycemic hypoxic diabetic-like ...   Valdés, Alberto; Lucio-Cazaña, Francisco J; Castro-Puyana, María; García-Pastor, Coral; Fiehn, ... U2CES030158 Sci Rep (2021 Mar 03) 33658594 Exiting the NIEHS site 2021 
DecoID improves identification rates in metabolomics through database-assisted MS/MS deconvolution.   Stancliffe, Ethan; Schwaiger-Haber, Michaela; Sindelar, Miriam; Patti, Gary J R35ES028365 Nat Methods (2021 Jul) 34239103 Exiting the NIEHS site 2021 
Deletion of Glut1 in early postnatal cartilage reprograms chondrocytes toward enhanced glutamine oxi ...   Wang, Cuicui; Ying, Jun; Niu, Xiangfeng; Li, Xiaofei; Patti, Gary J; Shen, Jie; O'Keefe, Regi ... R35ES028365 Bone Res (2021 Aug 23) 34426569 Exiting the NIEHS site 2021 
HERMES: a molecular-formula-oriented method to target the metabolome.   Giné, Roger; Capellades, Jordi; Badia, Josep M; Vughs, Dennis; Schwaiger-Haber, Michaela; Alexa ... R35ES028365 Nat Methods (2021 Nov) 34725482 Exiting the NIEHS site 2021 
HIF1α is required for NK cell metabolic adaptation during virus infection.   Victorino, Francisco; Bigley, Tarin M; Park, Eugene; Yao, Cong-Hui; Benoit, Jeanne; Yang, Li-P ... R35ES028365 Elife (2021 Aug 16) 34396954 Exiting the NIEHS site 2021 
Isotope tracing in adult zebrafish reveals alanine cycling between melanoma and liver.   Naser, Fuad J; Jackstadt, Madelyn M; Fowle-Grider, Ronald; Spalding, Jonathan L; Cho, Kevin; St ... R35ES028365 Cell Metab (2021 07 06) 33989520 Exiting the NIEHS site 2021 
Leucoselect Phytosome Modulates Serum Eicosapentaenoic Acid, Docosahexaenoic Acid, and Prostaglandin ...   Mao, Jenny T; Xue, Bingye; Fan, Sili; Neis, Patricia; Qualls, Clifford; Massie, Larry; Fiehn, ... U2CES030158 Cancer Prev Res (Phila) (2021 06) 33707173 Exiting the NIEHS site 2021 
Longitudinal Metabolomics of Human Plasma Reveals Robust Prognostic Markers of COVID-19 Disease Seve ...   Sindelar, Miriam; Stancliffe, Ethan; Schwaiger-Haber, Michaela; Anbukumar, Dhanalakshmi S; Albre ... R35ES028365 medRxiv (2021 Feb 08) 33564793 Exiting the NIEHS site 2021 
Loss of SNORA73 reprograms cellular metabolism and protects against steatohepatitis.   Sletten, Arthur C; Davidson, Jessica W; Yagabasan, Busra; Moores, Samantha; Schwaiger-Haber, Mi ... R35ES028365 Nat Commun (2021 Sep 01) 34471131 Exiting the NIEHS site 2021 
Metabolomics of Lung Microdissections Reveals Region- and Sex-Specific Metabolic Effects of Acute Na ...   Stevens, Nathanial C; Edwards, Patricia C; Tran, Lisa M; Ding, Xinxin; Van Winkle, Laura S; Fie ... P30ES023513, R01ES020867, T32ES007059, T32ES007091, U2CES030158 Toxicol Sci (2021 Nov 24) 34498071 Exiting the NIEHS site 2021 
Plasma lipidomics profile in pregnancy and gestational diabetes risk: a prospective study in a multi ...   Rahman, Mohammad L; Feng, Yen-Chen A; Fiehn, Oliver; Albert, Paul S; Tsai, Michael Y; Zhu, Yey ... U2CES030158 BMJ Open Diabetes Res Care (2021 03) 33674279 Exiting the NIEHS site 2021 
Quantitative rotational-echo double resonance for Carbon-13 spin clusters.   Matsuoka, Shigeru; Sindelar, Miriam; Bansal, Sonal; Patti, Gary J; Schaefer, Jacob R35ES028365 J Magn Reson (2021 09) 34364107 Exiting the NIEHS site 2021 
Quantum Chemistry Calculations for Metabolomics.   Borges, Ricardo M; Colby, Sean M; Das, Susanta; Edison, Arthur S; Fiehn, Oliver; Kind, Tobias; ... U2CES030158 Chem Rev (2021 May 26) 33979149 Exiting the NIEHS site 2021 
Spectral entropy outperforms MS/MS dot product similarity for small-molecule compound identification ...   Li, Yuanyue; Kind, Tobias; Folz, Jacob; Vaniya, Arpana; Mehta, Sajjan Singh; Fiehn, Oliver U2CES030158 Nat Methods (2021 Dec) 34857935 Exiting the NIEHS site 2021 
Targeting unique biological signals on the fly to improve MS/MS coverage and identification efficien ...   Cho, Kevin; Schwaiger-Haber, Michaela; Naser, Fuad J; Stancliffe, Ethan; Sindelar, Miriam; Patt ... R35ES028365 Anal Chim Acta (2021 Mar 08) 33551064 Exiting the NIEHS site 2021 
Alteration of Cellular Reduction Potential Will Change 64Cu-ATSM Signal With or Without Hypoxia.   Floberg, John M; Wang, Lingjue; Bandara, Nilantha; Rashmi, Ramachandran; Mpoy, Cedric; Garbow, ... R35ES028365 J Nucl Med (2020 03) 31586008 Exiting the NIEHS site 2020 
Author Correction: Structure of human GABAB receptor in an inactive state.   Park, Jinseo; Fu, Ziao; Frangaj, Aurel; Liu, Jonathan; Mosyak, Lidia; Shen, Tong; Slavkovich, ... U2CES030158 Nature (2020 Jul) 32665714 Exiting the NIEHS site 2020 
Chemical Discovery in the Era of Metabolomics.   Sindelar, Miriam; Patti, Gary J R35ES028365 J Am Chem Soc (2020 05 20) 32275430 Exiting the NIEHS site 2020 
Dietary serine-microbiota interaction enhances chemotherapeutic toxicity without altering drug conve ...   Ke, Wenfan; Saba, James A; Yao, Cong-Hui; Hilzendeger, Michael A; Drangowska-Way, Anna; Joshi, ... R35ES028365 Nat Commun (2020 May 22) 32444616 Exiting the NIEHS site 2020 
Dose-Response Metabolomics To Understand Biochemical Mechanisms and Off-Target Drug Effects with the ...   Yao, Cong-Hui; Wang, Lingjue; Stancliffe, Ethan; Sindelar, Miriam; Cho, Kevin; Yin, Weitong; W ... R35ES028365 Anal Chem (2020 01 21) 31804057 Exiting the NIEHS site 2020 
Exosomes in disease and regeneration: biological functions, diagnostics, and beneficial effects.   Lin, Yun; Anderson, Johnathon D; Rahnama, Lily M A; Gu, Shenwen V; Knowlton, Anne A U2CES030158 Am J Physiol Heart Circ Physiol (2020 Dec 01) 32986962 Exiting the NIEHS site 2020 
Glutaminase Inhibitors Induce Thiol-Mediated Oxidative Stress and Radiosensitization in Treatment-Re ...   Rashmi, Ramachandran; Jayachandran, Kay; Zhang, Jin; Menon, Vishnu; Muhammad, Naoshad; Zahner, ... P30ES005605, R35ES028365 Mol Cancer Ther (2020 12) 33087507 Exiting the NIEHS site 2020 
In-Silico-Generated Library for Sensitive Detection of 2-Dimethylaminoethylamine Derivatized FAHFA L ...   Ding, Jun; Kind, Tobias; Zhu, Quan-Fei; Wang, Yu; Yan, Jing-Wen; Fiehn, Oliver; Feng, Yu-Qi U2CES030158 Anal Chem (2020 04 21) 32202765 Exiting the NIEHS site 2020 
JARID1a Ablation in the Liver Alters Systemic Metabolism and Adaptation to Feeding.   DiTacchio, Kacee Ann; Kalinowska, Diana; Saran, Anand Rajamani; Byrne, Ashley; Vollmers, Christ ... U2CES030158 Cell Rep (2020 05 26) 32460011 Exiting the NIEHS site 2020 
Leveraging insights into cancer metabolism-a symposium report.   Cable, Jennifer; Finley, Lydia; Tu, Benjamin P; Patti, Gary J; Oliver, Trudy G; Vardhana, Sant ... R35ES028365 Ann N Y Acad Sci (2020 02) 31792987 Exiting the NIEHS site 2020 
Preclinical translation of exosomes derived from mesenchymal stem/stromal cells.   Elahi, Fanny M; Farwell, D Gregory; Nolta, Jan A; Anderson, Johnathon D U2CES030158 Stem Cells (2020 01) 31381842 Exiting the NIEHS site 2020 
Predicting in silico electron ionization mass spectra using quantum chemistry.   Wang, Shunyang; Kind, Tobias; Tantillo, Dean J; Fiehn, Oliver U2CES030158 J Cheminform (2020 Oct 20) 33372633 Exiting the NIEHS site 2020 
Remodeling Lipids in the Transition from Chronic Liver Disease to Hepatocellular Carcinoma.   Ismail, Israa T; Elfert, Ashraf; Helal, Marwa; Salama, Ibrahim; El-Said, Hala; Fiehn, Oliver U2CES030158 Cancers (Basel) (2020 Dec 30) 33396945 Exiting the NIEHS site 2020 
Retip: Retention Time Prediction for Compound Annotation in Untargeted Metabolomics.   Bonini, Paolo; Kind, Tobias; Tsugawa, Hiroshi; Barupal, Dinesh Kumar; Fiehn, Oliver U2CES030158 Anal Chem (2020 Jun 02) 32390414 Exiting the NIEHS site 2020 
Structure of human GABAB receptor in an inactive state.   Park, Jinseo; Fu, Ziao; Frangaj, Aurel; Liu, Jonathan; Mosyak, Lidia; Shen, Tong; Slavkovich, ... P30ES009089, U2CES030158 Nature (2020 Aug) 32581365 Exiting the NIEHS site 2020 
Sugar Alcohols Have a Key Role in Pathogenesis of Chronic Liver Disease and Hepatocellular Carcinoma ...   Ismail, Israa T; Fiehn, Oliver; Elfert, Ashraf; Helal, Marwa; Salama, Ibrahim; El-Said, Hala U2CES030158 Cancers (Basel) (2020 Feb 19) 32092943 Exiting the NIEHS site 2020 
The Emerging and Diverse Roles of Bis(monoacylglycero) Phosphate Lipids in Cellular Physiology and D ...   Showalter, Megan R; Berg, Anastasia L; Nagourney, Alexander; Heil, Hailey; Carraway 3rd, Kermit ... U2CES030158 Int J Mol Sci (2020 Oct 29) 33137979 Exiting the NIEHS site 2020 
Utilizing cooled liquid chromatography and chemical derivatization to separate and quantify C3-epime ...   DeFelice, Brian C; Pedersen, Theresa L; Shorrosh, Hanan; Johnson, Randi K; Seifert, Jennifer A; ... U2CES030158 J Steroid Biochem Mol Biol (2020 03) 31715316 Exiting the NIEHS site 2020 
Zika Virus Infection Results in Biochemical Changes Associated With RNA Editing, Inflammatory and An ...   Onyango, Maria G; Attardo, Geoffrey M; Kelly, Erin Taylor; Bialosuknia, Sean M; Stout, Jessica; ... U2CES030158 Front Microbiol (2020) 33133033 Exiting the NIEHS site 2020 
17-α estradiol ameliorates age-associated sarcopenia and improves late-life physical function in mal ...   Garratt, Michael; Leander, Danielle; Pifer, Kaitlyn; Bower, Brian; Herrera, Jonathan J; Day, S ... U2CES030158 Aging Cell (2019 04) 30740872 Exiting the NIEHS site 2019 
A Comprehensive Plasma Metabolomics Dataset for a Cohort of Mouse Knockouts within the International ...   Barupal, Dinesh K; Zhang, Ying; Shen, Tong; Fan, Sili; Roberts, Bryan S; Fitzgerald, Patrick; ... U2CES030158 Metabolites (2019 May 22) 31121816 Exiting the NIEHS site 2019 
A Protocol to Compare Methods for Untargeted Metabolomics.   Wang, Lingjue; Naser, Fuad J; Spalding, Jonathan L; Patti, Gary J R35ES028365 Methods Mol Biol (2019) 30315456 Exiting the NIEHS site 2019 
Exogenous Monounsaturated Fatty Acids Promote a Ferroptosis-Resistant Cell State.   Magtanong, Leslie; Ko, Pin-Joe; To, Milton; Cao, Jennifer Yinuo; Forcina, Giovanni C; Tarangelo ... R35ES028365 Cell Chem Biol (2019 Mar 21) 30686757 Exiting the NIEHS site 2019 
Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approac ...   Barupal, Dinesh Kumar; Fiehn, Oliver U2CES030158 Environ Health Perspect (2019 09) 31557052 Exiting the NIEHS site 2019 
Hepatic monoacylglycerol acyltransferase 1 is induced by prolonged food deprivation to modulate the ...   Lutkewitte, Andrew J; McCommis, Kyle S; Schweitzer, George G; Chambers, Kari T; Graham, Mark J; ... R35ES028365 J Lipid Res (2019 03) 30610082 Exiting the NIEHS site 2019 
Hepatocyte-Macrophage Acetoacetate Shuttle Protects against Tissue Fibrosis.   Puchalska, Patrycja; Martin, Shannon E; Huang, Xiaojing; Lengfeld, Justin E; Daniel, Bence; Gra ... R35ES028365 Cell Metab (2019 02 05) 30449686 Exiting the NIEHS site 2019 
Impaired skeletal muscle mitochondrial pyruvate uptake rewires glucose metabolism to drive whole-bod ...   Sharma, Arpit; Oonthonpan, Lalita; Sheldon, Ryan D; Rauckhorst, Adam J; Zhu, Zhiyong; Tompkins, ... R35ES028365 Elife (2019 Jul 18) 31305240 Exiting the NIEHS site 2019 
Inborn Errors of Metabolism in the Era of Untargeted Metabolomics and Lipidomics.   Ismail, Israa T; Showalter, Megan R; Fiehn, Oliver U2CES030158 Metabolites (2019 Oct 21) 31640247 Exiting the NIEHS site 2019 
International Ring Trial of a High Resolution Targeted Metabolomics and Lipidomics Platform for Seru ...   Thompson, J Will; Adams, Kendra J; Adamski, Jerzy; Asad, Yasmin; Borts, David; Bowden, John A; ... R35ES028365 Anal Chem (2019 11 19) 31638379 Exiting the NIEHS site 2019 
Metabolomics Analyses of 14 Classical Neurotransmitters by GC-TOF with LC-MS Illustrates Secretion o ...   Hook, Vivian; Kind, Tobias; Podvin, Sonia; Palazoglu, Mine; Tran, Carol; Toneff, Thomas; Samra ... U2CES030158 ACS Chem Neurosci (2019 03 20) 30698015 Exiting the NIEHS site 2019 
Mitochondrial fusion supports increased oxidative phosphorylation during cell proliferation.   Yao, Cong-Hui; Wang, Rencheng; Wang, Yahui; Kung, Che-Pei; Weber, Jason D; Patti, Gary J R35ES028365 Elife (2019 01 29) 30694178 Exiting the NIEHS site 2019 
Ontology-based metabolomics data integration with quality control.   Buendia, Patricia; Bradley, Ray M; Taylor, Thomas J; Schymanski, Emma L; Patti, Gary J; Kabuka, ... R35ES028365 Bioanalysis (2019 Jun) 31179719 Exiting the NIEHS site 2019 
Perspectives on Data Analysis in Metabolomics: Points of Agreement and Disagreement from the 2018 AS ...   Baker, Erin S; Patti, Gary J R35ES028365 J Am Soc Mass Spectrom (2019 Oct) 31440979 Exiting the NIEHS site 2019 
Primed mesenchymal stem cells package exosomes with metabolites associated with immunomodulation.   Showalter, Megan R; Wancewicz, Benjamin; Fiehn, Oliver; Archard, Joehleen A; Clayton, Shannon; ... U2CES030158 Biochem Biophys Res Commun (2019 05 14) 30926165 Exiting the NIEHS site 2019 
Rapid LC-MS/MS quantification of cancer related acetylated polyamines in human biofluids.   DeFelice, Brian C; Fiehn, Oliver U2CES030158 Talanta (2019 May 01) 30683386 Exiting the NIEHS site 2019 
Serum and urinary metabolomics and outcomes in cirrhosis.   Bajaj, Jasmohan S; Fan, Sili; Thacker, Leroy R; Fagan, Andrew; Gavis, Edith; White, Melanie B; ... U2CES030158 PLoS One (2019) 31560724 Exiting the NIEHS site 2019 
Sets of coregulated serum lipids are associated with Alzheimer's disease pathophysiology.   Barupal, Dinesh Kumar; Baillie, Rebecca; Fan, Sili; Saykin, Andrew J; Meikle, Peter J; Arnold, ... U2CES030158 Alzheimers Dement (Amst) (2019 Dec) 31517024 Exiting the NIEHS site 2019 
Structure Annotation of All Mass Spectra in Untargeted Metabolomics.   Blaženović, Ivana; Kind, Tobias; Sa, Michael R; Ji, Jian; Vaniya, Arpana; Wancewicz, Benjamin; ... U2CES030158 Anal Chem (2019 02 05) 30608141 Exiting the NIEHS site 2019 
Systematic Error Removal Using Random Forest for Normalizing Large-Scale Untargeted Lipidomics Data.   Fan, Sili; Kind, Tobias; Cajka, Tomas; Hazen, Stanley L; Tang, W H Wilson; Kaddurah-Daouk, Rim ... U2CES030158 Anal Chem (2019 03 05) 30758187 Exiting the NIEHS site 2019 
Systems-level analysis of isotopic labeling in untargeted metabolomic data by X13CMS.   Llufrio, Elizabeth M; Cho, Kevin; Patti, Gary J R35ES028365 Nat Protoc (2019 07) 31168088 Exiting the NIEHS site 2019 
Consumption of NADPH for 2-HG Synthesis Increases Pentose Phosphate Pathway Flux and Sensitizes Cell ...   Gelman, Susan J; Naser, Fuad; Mahieu, Nathaniel G; McKenzie, Lisa D; Dunn, Gavin P; Chheda, Mi ... R35ES028365 Cell Rep (2018 01 09) 29320744 Exiting the NIEHS site 2018 
Distinctive Patterns of Flavonoid Biosynthesis in Roots and Nodules of Datisca glomerata and Medicag ...   Gifford, Isaac; Battenberg, Kai; Vaniya, Arpana; Wilson, Alex; Tian, Li; Fiehn, Oliver; Berry, ... U2CES030158 Front Plant Sci (2018) 30364174 Exiting the NIEHS site 2018 
Diversity of Neuropeptide Cell-Cell Signaling Molecules Generated by Proteolytic Processing Revealed ...   Hook, Vivian; Lietz, Christopher B; Podvin, Sonia; Cajka, Tomas; Fiehn, Oliver U2CES030158 J Am Soc Mass Spectrom (2018 May) 29667161 Exiting the NIEHS site 2018 
Identifying off-target effects of etomoxir reveals that carnitine palmitoyltransferase I is essentia ...   Yao, Cong-Hui; Liu, Gao-Yuan; Wang, Rencheng; Moon, Sung Ho; Gross, Richard W; Patti, Gary J R35ES028365 PLoS Biol (2018 Mar) 29596410 Exiting the NIEHS site 2018 
Integrating bioinformatics approaches for a comprehensive interpretation of metabolomics datasets.   Barupal, Dinesh Kumar; Fan, Sili; Fiehn, Oliver U2CES030158 Curr Opin Biotechnol (2018 12) 29413745 Exiting the NIEHS site 2018 
Isotope Tracing Untargeted Metabolomics Reveals Macrophage Polarization-State-Specific Metabolic Coo ...   Puchalska, Patrycja; Huang, Xiaojing; Martin, Shannon E; Han, Xianlin; Patti, Gary J; Crawford, ... R35ES028365 iScience (2018 Nov 30) 30448730 Exiting the NIEHS site 2018 
Mechanism of High-Level Daptomycin Resistance in Corynebacterium striatum.   Goldner, Nicholas K; Bulow, Christopher; Cho, Kevin; Wallace, Meghan; Hsu, Fong-Fu; Patti, Gar ... R35ES028365 mSphere (2018 08 08) 30089649 Exiting the NIEHS site 2018 
Metabolic and Transcriptional Modules Independently Diversify Plasma Cell Lifespan and Function.   Lam, Wing Y; Jash, Arijita; Yao, Cong-Hui; D'Souza, Lucas; Wong, Rachel; Nunley, Ryan M; Meare ... R35ES028365 Cell Rep (2018 Aug 28) 30157439 Exiting the NIEHS site 2018 
Sorting cells alters their redox state and cellular metabolome.   Llufrio, Elizabeth M; Wang, Lingjue; Naser, Fuad J; Patti, Gary J R35ES028365 Redox Biol (2018 Jun) 29627745 Exiting the NIEHS site 2018 
Trace Phosphate Improves ZIC-pHILIC Peak Shape, Sensitivity, and Coverage for Untargeted Metabolomic ...   Spalding, Jonathan L; Naser, Fuad J; Mahieu, Nathaniel G; Johnson, Stephen L; Patti, Gary J R35ES028365 J Proteome Res (2018 10 05) 30160483 Exiting the NIEHS site 2018 
Transport-exclusion pharmacology to localize lactate dehydrogenase activity within cells.   Niu, Xiangfeng; Chen, Ying-Jr; Crawford, Peter A; Patti, Gary J R35ES028365 Cancer Metab (2018) 30559963 Exiting the NIEHS site 2018 
Two complementary reversed-phase separations for comprehensive coverage of the semipolar and nonpola ...   Naser, Fuad J; Mahieu, Nathaniel G; Wang, Lingjue; Spalding, Jonathan L; Johnson, Stephen L; Pa ... R35ES028365 Anal Bioanal Chem (2018 Feb) 29256075 Exiting the NIEHS site 2018 
Environmental Tobacco Smoke Alters Metabolic Systems in Adult Rats.   Barupal, Dinesh K; Pinkerton, Kent E; Hood, Carol; Kind, Tobias; Fiehn, Oliver P30ES023513, U2CES030158 Chem Res Toxicol (2016 11 21) 27788581 Exiting the NIEHS site 2016 
Maximizing the value of metabolomic data.   Goeddel, L C; Patti, G J R35ES028365 Bioanalysis (2012 Sep) 23046261 Exiting the NIEHS site 2012 
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