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Viewing 143 publications
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| Publication Title | Authors | Grant Number(s) | Journal (Pub date) | PubMed Link | Pub Year |
|---|---|---|---|---|---|
| Acyl-CoA Identification in Mouse Liver Samples Using the In Silico CoA-Blast Tandem Mass Spectral Li ... | Keshet, Uri; Kind, Tobias; Lu, Xinchen; Devi, Sarita; Fiehn, Oliver | U2CES030158 | Anal Chem (2022 02 15) |
35119811
|
2022 |
| BioTransformer 3.0-a web server for accurately predicting metabolic transformation products. | Wishart, David S; Tian, Siyang; Allen, Dana; Oler, Eponine; Peters, Harrison; Lui, Vicki W; Ga ... | U2CES030170 | Nucleic Acids Res (2022 May 10) |
35536252
|
2022 |
| Combining Isotopologue Workflows and Simultaneous Multidimensional Separations to Detect, Identify, ... | Dodds, James N; Wang, Lingjue; Patti, Gary J; Baker, Erin S | P30ES025128, P42ES027704, P42ES031009, R35ES028365 | Anal Chem (2022 02 08) |
35089687
|
2022 |
| DEIMoS: An Open-Source Tool for Processing High-Dimensional Mass Spectrometry Data. | Colby, Sean M; Chang, Christine H; Bade, Jessica L; Nunez, Jamie R; Blumer, Madison R; Orton, ... | U2CES030170 | Anal Chem (2022 04 26) |
35430813
|
2022 |
| Emerging technologies and their impact on regulatory science. | Anklam, Elke; Bahl, Martin Iain; Ball, Robert; Beger, Richard D; Cohen, Jonathan; Fitzpatrick, ... | P30ES029067, P42ES027704, U2CES030170, U2CES030857 | Exp Biol Med (Maywood) (2022 01) |
34783606
|
2022 |
| Evaluating Co-occurrence as a Criterion for Identification of Undocumented Xenobiotic Exposures in H ... | Singer, Grant T; Liu, Ken H; Lee, Choon M; Miller, Gary W; Li, Shuzhao; Go, Young-Mi; Jones, ... | U2CES030163 | FASEB J (2022 May) |
35567453
|
2022 |
| Evaluating the Accuracy of the QCEIMS Approach for Computational Prediction of Electron Ionization M ... | Lee, Jesi; Kind, Tobias; Tantillo, Dean Joseph; Wang, Lee-Ping; Fiehn, Oliver | U2CES030158 | Metabolites (2022 Jan 12) |
35050190
|
2022 |
| GAIT-GM integrative cross-omics analyses reveal cholinergic defects in a C. elegans model of Parkins ... | McIntyre, Lauren M; Huertas, Francisco; Morse, Alison M; Kaletsky, Rachel; Murphy, Coleen T; Ka ... | R01ES023839, U2CES030163 | Sci Rep (2022 02 28) |
35228596
|
2022 |
| Mitochondrial pyruvate carrier inhibitors improve metabolic parameters in diet-induced obese mice. | Hodges, Wesley T; Jarasvaraparn, Chaowapong; Ferguson, Daniel; Griffett, Kristine; Gill, Lauren ... | R35ES028365 | J Biol Chem (2022 02) |
34973337
|
2022 |
| Pharmacometabonomic association of cyclophosphamide 4-hydroxylation in hematopoietic cell transplant ... | McCune, Jeannine S; Nakamura, Ryotaro; O'Meally, Denis; Randolph, Timothy W; Sandmaier, Brenda ... | U2CES030158 | Clin Transl Sci (2022 May) |
35106927
|
2022 |
| Plasma Metabolite Profiles Following Consumption of Animal Protein and Soybean-Based Diet in Hyperch ... | Huang, Neil K; Matthan, Nirupa R; Matuszek, Gregory; Lichtenstein, Alice H | U2CES030158 | Metabolites (2022 Feb 25) |
35323651
|
2022 |
| Quantum Chemical Prediction of Electron Ionization Mass Spectra of Trimethylsilylated Metabolites. | Wang, Shunyang; Kind, Tobias; Bremer, Parker Ladd; Tantillo, Dean J; Fiehn, Oliver | U2CES030158 | Anal Chem (2022 01 25) |
35006668
|
2022 |
| Silencing alanine transaminase 2 in diabetic liver attenuates hyperglycemia by reducing gluconeogene ... | Martino, Michael R; Gutiérrez-Aguilar, Manuel; Yiew, Nicole K H; Lutkewitte, Andrew J; Singer, ... | R35ES028365 | Cell Rep (2022 04 26) |
35476997
|
2022 |
| The Exposome and Toxicology: A Win-Win Collaboration. | Barouki, Robert; Audouze, Karine; Becker, Christel; Blaha, Ludek; Coumoul, Xavier; Karakitsios, ... | U2CES030163 | Toxicol Sci (2022 02 28) |
34878125
|
2022 |
| The metabolome as a biomarker of aging in Drosophila melanogaster. | Zhao, Xiaqing; Golic, Forrest T; Harrison, Benjamin R; Manoj, Meghna; Hoffman, Elise V; Simon, ... | U2CES030167 | Aging Cell (2022 02) |
35019203
|
2022 |
| A metabolome atlas of the aging mouse brain. | Ding, Jun; Ji, Jian; Rabow, Zachary; Shen, Tong; Folz, Jacob; Brydges, Christopher R; Fan, Si ... | U2CES030158 | Nat Commun (2021 10 15) |
34654818
|
2021 |
| A Practical Guide to Metabolomics Software Development. | Chang, Hui-Yin; Colby, Sean M; Du, Xiuxia; Gomez, Javier D; Helf, Maximilian J; Kechris, Kater ... | U2CES030164, U2CES030170 | Anal Chem (2021 02 02) |
33467846
|
2021 |
| A scalable workflow to characterize the human exposome. | Hu, Xin; Walker, Douglas I; Liang, Yongliang; Smith, Matthew Ryan; Orr, Michael L; Juran, Bria ... | P30ES019776, R24ES029490, U2CES030163, U2CES030859 | Nat Commun (2021 09 22) |
34552080
|
2021 |
| AutoGraph: Autonomous Graph-Based Clustering of Small-Molecule Conformations. | Tanemura, Kiyoto Aramis; Das, Susanta; Merz Jr, Kenneth M | U2CES030167 | J Chem Inf Model (2021 04 26) |
33780248
|
2021 |
| Ceramide synthase 2 deletion decreases the infectivity of HIV-1. | Barklis, Eric; Alfadhli, Ayna; Kyle, Jennifer E; Bramer, Lisa M; Bloodsworth, Kent J; Barklis, ... | U2CES030170 | J Biol Chem (2021 Jan-Jun) |
33515546
|
2021 |
| CFM-ID 4.0: More Accurate ESI-MS/MS Spectral Prediction and Compound Identification. | Wang, Fei; Liigand, Jaanus; Tian, Siyang; Arndt, David; Greiner, Russell; Wishart, David S | U2CES030170 | Anal Chem (2021 08 31) |
34403256
|
2021 |
| Combinatorial Assembly of Modular Glucosides via Carboxylesterases Regulates C. elegans Starvation S ... | Wrobel, Chester J J; Yu, Jingfang; Rodrigues, Pedro R; Ludewig, Andreas H; Curtis, Brian J; Coh ... | U2CES030167 | J Am Chem Soc (2021 09 15) |
34460264
|
2021 |
| Comparing Stable Isotope Enrichment by Gas Chromatography with Time-of-Flight, Quadrupole Time-of-Fl ... | Zhang, Ying; Gao, Bei; Valdiviez, Luis; Zhu, Chao; Gallagher, Tara; Whiteson, Katrine; Fiehn, ... | U2CES030158 | Anal Chem (2021 02 02) |
33434014
|
2021 |
| Comparison of High-Resolution Fourier Transform Mass Spectrometry Platforms for Putative Metabolite ... | Huang, Danning; Bouza, Marcos; Gaul, David A; Leach 3rd, Franklin E; Amster, I Jonathan; Schroe ... | U2CES030167 | Anal Chem (2021 09 14) |
34460220
|
2021 |
| Comprehensive metabolomic study of the response of HK-2 cells to hyperglycemic hypoxic diabetic-like ... | Valdés, Alberto; Lucio-Cazaña, Francisco J; Castro-Puyana, María; García-Pastor, Coral; Fiehn, ... | U2CES030158 | Sci Rep (2021 03 03) |
33658594
|
2021 |
| Correction to "Chespa: Streamlining Expansive Chemical Space Evaluation of Molecular Sets". | Nuñez, Jamie R; Mcgrady, Monee; Yesiltepe, Yasemin; Renslow, Ryan S; Metz, Thomas O | U2CES030170 | J Chem Inf Model (2021 May 24) |
33871993
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2021 |
| Cruciferous vegetables (Brassica oleracea) confer cytoprotective effects in Drosophila intestines. | Lyles, James T; Luo, Liping; Liu, Ken; Jones, Dean P; Jones, Rheinallt M; Quave, Cassandra L | U2CES030163 | Gut Microbes (2021 Jan-Dec) |
33966605
|
2021 |
| Culture and Assay of Large-Scale Mixed-Stage Caenorhabditis elegans Populations. | Shaver, Amanda O; Gouveia, Goncalo J; Kirby, Pamela S; Andersen, Erik C; Edison, Arthur S | U2CES030167 | J Vis Exp (2021 05 05) |
34028439
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2021 |
| CyProduct: A Software Tool for Accurately Predicting the Byproducts of Human Cytochrome P450 Metabol ... | Tian, Siyang; Cao, Xuan; Greiner, Russell; Li, Carin; Guo, AnChi; Wishart, David S | U2CES030170 | J Chem Inf Model (2021 06 28) |
34038112
|
2021 |
| DecoID improves identification rates in metabolomics through database-assisted MS/MS deconvolution. | Stancliffe, Ethan; Schwaiger-Haber, Michaela; Sindelar, Miriam; Patti, Gary J | R35ES028365 | Nat Methods (2021 07) |
34239103
|
2021 |
| Deletion of Glut1 in early postnatal cartilage reprograms chondrocytes toward enhanced glutamine oxi ... | Wang, Cuicui; Ying, Jun; Niu, Xiangfeng; Li, Xiaofei; Patti, Gary J; Shen, Jie; O'Keefe, Regi ... | R35ES028365 | Bone Res (2021 Aug 23) |
34426569
|
2021 |
| Distribution of phytochelatins, metal-binding compounds, in plant foods: A survey of commonly consum ... | Dennis, Kristine K; Liu, Ken H; Uppal, Karan; Go, Young-Mi; Jones, Dean P | U2CES030163 | Food Chem (2021 Mar 01) |
32950899
|
2021 |
| Environmental chemicals and metabolic disruption in primary and secondary human parathyroid tumors. | Hu, Xin; Saunders, Neil; Safley, Susan; Smith, Matthew Ryan; Liang, Yongliang; Tran, ViLinh; S ... | P30ES019776, U2CES030163 | Surgery (2021 01) |
32771296
|
2021 |
| Exploring the Impacts of Conformer Selection Methods on Ion Mobility Collision Cross Section Predict ... | Nielson, Felicity F; Colby, Sean M; Thomas, Dennis G; Renslow, Ryan S; Metz, Thomas O | U2CES030170 | Anal Chem (2021 03 02) |
33606495
|
2021 |
| HIF1α is required for NK cell metabolic adaptation during virus infection. | Victorino, Francisco; Bigley, Tarin M; Park, Eugene; Yao, Cong-Hui; Benoit, Jeanne; Yang, Li-P ... | R35ES028365 | Elife (2021 08 16) |
34396954
|
2021 |
| Isotope tracing in adult zebrafish reveals alanine cycling between melanoma and liver. | Naser, Fuad J; Jackstadt, Madelyn M; Fowle-Grider, Ronald; Spalding, Jonathan L; Cho, Kevin; St ... | R35ES028365 | Cell Metab (2021 07 06) |
33989520
|
2021 |
| Large scale enzyme based xenobiotic identification for exposomics. | Liu, Ken H; Lee, Choon M; Singer, Grant; Bais, Preeti; Castellanos, Francisco; Woodworth, Mich ... | P30ES019776, U2CES030163 | Nat Commun (2021 09 14) |
34521839
|
2021 |
| Leucoselect Phytosome Modulates Serum Eicosapentaenoic Acid, Docosahexaenoic Acid, and Prostaglandin ... | Mao, Jenny T; Xue, Bingye; Fan, Sili; Neis, Patricia; Qualls, Clifford; Massie, Larry; Fiehn, ... | U2CES030158 | Cancer Prev Res (Phila) (2021 06) |
33707173
|
2021 |
| Long-Term Metabolomics Reference Material. | Gouveia, Goncalo J; Shaver, Amanda O; Garcia, Brianna M; Morse, Alison M; Andersen, Erik C; Edi ... | U2CES030167 | Anal Chem (2021 07 06) |
34156835
|
2021 |
| Longitudinal Metabolomics of Human Plasma Reveals Robust Prognostic Markers of COVID-19 Disease Seve ... | Sindelar, Miriam; Stancliffe, Ethan; Schwaiger-Haber, Michaela; Anbukumar, Dhanalakshmi S; Albre ... | R35ES028365 | medRxiv (2021 Feb 08) |
33564793
|
2021 |
| Mass Spectrometry Adduct Calculator. | Blumer, Madison R; Chang, Christine H; Brayfindley, Evangelina; Nunez, Jamie R; Colby, Sean M; ... | U2CES030170 | J Chem Inf Model (2021 12 27) |
34842435
|
2021 |
| Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting prac ... | Alseekh, Saleh; Aharoni, Asaph; Brotman, Yariv; Contrepois, Kévin; D'Auria, John; Ewald, Jan; ... | U2CES030167 | Nat Methods (2021 07) |
34239102
|
2021 |
| metabCombiner: Paired Untargeted LC-HRMS Metabolomics Feature Matching and Concatenation of Disparat ... | Habra, Hani; Kachman, Maureen; Bullock, Kevin; Clish, Clary; Evans, Charles R; Karnovsky, Alla | P30ES017885, U2CES030164 | Anal Chem (2021 03 30) |
33724799
|
2021 |
| Metabolome-wide association study of flavorant vanillin exposure in bronchial epithelial cells revea ... | Smith, Matthew Ryan; Jarrell, Zachery R; Orr, Michael; Liu, Ken H; Go, Young-Mi; Jones, Dean P | P30ES019776, R21ES031824, T32ES012870, U2CES030163 | Environ Int (2021 02) |
33360165
|
2021 |
| Metabolomics as a Truly Translational Tool for Precision Medicine. | Schmidt, Julian C; Dougherty, Bonnie V; Beger, Richard D; Jones, Dean P; Schmidt, Michael A; Ma ... | P30ES019776, R01ES032189, R01ES032189, R21ES031824, R24ES029490, U2CES030163 | Int J Toxicol (2021 10) |
34514887
|
2021 |
| Metabolomics of Lung Microdissections Reveals Region- and Sex-Specific Metabolic Effects of Acute Na ... | Stevens, Nathanial C; Edwards, Patricia C; Tran, Lisa M; Ding, Xinxin; Van Winkle, Laura S; Fie ... | P30ES023513, R01ES020867, T32ES007059, U2CES030158 | Toxicol Sci (2021 11 24) |
34498071
|
2021 |
| Microbial metabolite delta-valerobetaine is a diet-dependent obesogen. | Liu, Ken H; Owens, Joshua A; Saeedi, Bejan; Cohen, Catherine E; Bellissimo, Moriah P; Naudin, ... | P30ES019776, R21ES031824, U2CES030163 | Nat Metab (2021 12) |
34931082
|
2021 |
| Modifying Chromatography Conditions for Improved Unknown Feature Identification in Untargeted Metabo ... | Anderson, Brady G; Raskind, Alexander; Habra, Hani; Kennedy, Robert T; Evans, Charles R | U2CES030164 | Anal Chem (2021 12 07) |
34794310
|
2021 |
| NMR: Unique Strengths That Enhance Modern Metabolomics Research. | Edison, Arthur S; Colonna, Maxwell; Gouveia, Goncalo J; Holderman, Nicole R; Judge, Michael T; ... | U2CES030167 | Anal Chem (2021 01 12) |
33180470
|
2021 |
| Plasma lipidomics profile in pregnancy and gestational diabetes risk: a prospective study in a multi ... | Rahman, Mohammad L; Feng, Yen-Chen A; Fiehn, Oliver; Albert, Paul S; Tsai, Michael Y; Zhu, Yey ... | U2CES030158 | BMJ Open Diabetes Res Care (2021 03) |
33674279
|
2021 |
| Quantum Chemistry Calculations for Metabolomics. | Borges, Ricardo M; Colby, Sean M; Das, Susanta; Edison, Arthur S; Fiehn, Oliver; Kind, Tobias; ... | U2CES030158, U2CES030167, U2CES030170 | Chem Rev (2021 05 26) |
33979149
|
2021 |
| Spectral entropy outperforms MS/MS dot product similarity for small-molecule compound identification ... | Li, Yuanyue; Kind, Tobias; Folz, Jacob; Vaniya, Arpana; Mehta, Sajjan Singh; Fiehn, Oliver | U2CES030158 | Nat Methods (2021 12) |
34857935
|
2021 |
| Targeting unique biological signals on the fly to improve MS/MS coverage and identification efficien ... | Cho, Kevin; Schwaiger-Haber, Michaela; Naser, Fuad J; Stancliffe, Ethan; Sindelar, Miriam; Patt ... | R35ES028365 | Anal Chim Acta (2021 Mar 08) |
33551064
|
2021 |
| Triboelectric Nanogenerator Ion Mobility-Mass Spectrometry for In-Depth Lipid Annotation. | Bouza, Marcos; Li, Yafeng; Wang, Aurelia C; Wang, Zhong Lin; Fernández, Facundo M | U2CES030167 | Anal Chem (2021 04 06) |
33720699
|
2021 |
| Utilizing a Biology-Driven Approach to Map the Exposome in Health and Disease: An Essential Investme ... | Chung, Ming Kei; Rappaport, Stephen M; Wheelock, Craig E; Nguyen, Vy Kim; van der Meer, Thomas ... | P42ES004705, R01ES028802, R01ES028802, R01ES028802, R01ES028802, U2CES030163 | Environ Health Perspect (2021 08) |
34435882
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2021 |
| A Bioinformatics Primer to Data Science, with Examples for Metabolomics. | Pittard, W Stephen; Villaveces, Cecilia Keeko; Li, Shuzhao | P30ES019776, U2CES030163 | Methods Mol Biol (2020) |
31953822
|
2020 |
| A vision for exposome epidemiology: The pregnancy exposome in relation to breast cancer in the Child ... | Jones, Dean P; Cohn, Barbara A | P30ES019776, U2CES030163 | Reprod Toxicol (2020 03) |
32197999
|
2020 |
| Alteration of Cellular Reduction Potential Will Change 64Cu-ATSM Signal With or Without Hypoxia. | Floberg, John M; Wang, Lingjue; Bandara, Nilantha; Rashmi, Ramachandran; Mpoy, Cedric; Garbow, ... | R35ES028365 | J Nucl Med (2020 03) |
31586008
|
2020 |
| Chemical Discovery in the Era of Metabolomics. | Sindelar, Miriam; Patti, Gary J | R35ES028365 | J Am Chem Soc (2020 05 20) |
32275430
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2020 |
| Crystal-C: A Computational Tool for Refinement of Open Search Results. | Chang, Hui-Yin; Kong, Andy T; da Veiga Leprevost, Felipe; Avtonomov, Dmitry M; Haynes, Sarah E; ... | U2CES030164 | J Proteome Res (2020 06 05) |
32338005
|
2020 |
| Dietary serine-microbiota interaction enhances chemotherapeutic toxicity without altering drug conve ... | Ke, Wenfan; Saba, James A; Yao, Cong-Hui; Hilzendeger, Michael A; Drangowska-Way, Anna; Joshi, ... | R35ES028365 | Nat Commun (2020 05 22) |
32444616
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2020 |
| Differences in plasma metabolites related to Alzheimer's disease, APOE ε4 status, and ethnicity. | Vardarajan, Badri; Kalia, Vrinda; Manly, Jennifer; Brickman, Adam; Reyes-Dumeyer, Dolly; Lantig ... | R01ES023839, U2CES030163 | Alzheimers Dement (N Y) (2020) |
32377558
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2020 |
| Dose-Response Metabolomics To Understand Biochemical Mechanisms and Off-Target Drug Effects with the ... | Yao, Cong-Hui; Wang, Lingjue; Stancliffe, Ethan; Sindelar, Miriam; Cho, Kevin; Yin, Weitong; W ... | R35ES028365 | Anal Chem (2020 01 21) |
31804057
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2020 |
| Environmental chemical burden in metabolic tissues and systemic biological pathways in adolescent ba ... | Valvi, Damaskini; Walker, Douglas I; Inge, Thomas; Bartell, Scott M; Jenkins, Todd; Helmrath, ... | P30ES007048, P30ES019776, P30ES023515, R01ES024946, R01ES024946, R01ES024946, R01ES024946, R01ES029944, R01ES030364, R01ES030691, R21ES028903, R21ES029328, R21ES029681, U2CES026561, U2CES030163 | Environ Int (2020 10) |
32683211
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2020 |
| Exosomes in disease and regeneration: biological functions, diagnostics, and beneficial effects. | Lin, Yun; Anderson, Johnathon D; Rahnama, Lily M A; Gu, Shenwen V; Knowlton, Anne A | U2CES030158 | Am J Physiol Heart Circ Physiol (2020 12 01) |
32986962
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2020 |
| Glutaminase Inhibitors Induce Thiol-Mediated Oxidative Stress and Radiosensitization in Treatment-Re ... | Rashmi, Ramachandran; Jayachandran, Kay; Zhang, Jin; Menon, Vishnu; Muhammad, Naoshad; Zahner, ... | P30ES005605, R35ES028365 | Mol Cancer Ther (2020 12) |
33087507
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2020 |
| In-Silico-Generated Library for Sensitive Detection of 2-Dimethylaminoethylamine Derivatized FAHFA L ... | Ding, Jun; Kind, Tobias; Zhu, Quan-Fei; Wang, Yu; Yan, Jing-Wen; Fiehn, Oliver; Feng, Yu-Qi | U2CES030158 | Anal Chem (2020 04 21) |
32202765
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2020 |
| JARID1a Ablation in the Liver Alters Systemic Metabolism and Adaptation to Feeding. | DiTacchio, Kacee Ann; Kalinowska, Diana; Saran, Anand Rajamani; Byrne, Ashley; Vollmers, Christ ... | U2CES030158 | Cell Rep (2020 05 26) |
32460011
|
2020 |
| Leveraging insights into cancer metabolism-a symposium report. | Cable, Jennifer; Finley, Lydia; Tu, Benjamin P; Patti, Gary J; Oliver, Trudy G; Vardhana, Sant ... | R35ES028365 | Ann N Y Acad Sci (2020 02) |
31792987
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2020 |
| Macronutrient, Energy, and Bile Acid Metabolism Pathways Altered Following a Physiological Meal Chal ... | Yu, Elaine A; Yu, Tianwei; Jones, Dean P; Martorell, Reynaldo; Ramirez-Zea, Manuel; Stein, Ary ... | P30ES019776, U2CES030163 | J Nutr (2020 08 01) |
32597983
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2020 |
| Metabolite Structure Assignment Using In Silico NMR Techniques. | Das, Susanta; Edison, Arthur S; Merz Jr, Kenneth M | U2CES030167 | Anal Chem (2020 08 04) |
32608974
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2020 |
| Metabolome Wide Association Study of serum DDT and DDE in Pregnancy and Early Postpartum. | Hu, Xin; Li, Shuzhao; Cirillo, Piera; Krigbaum, Nickilou; Tran, ViLinh; Ishikawa, Tomoko; La M ... | P30ES019776, U2CES030163 | Reprod Toxicol (2020 03) |
31102720
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2020 |
| Metabolomic Profiling After a Meal Shows Greater Changes and Lower Metabolic Flexibility in Cardiome ... | Yu, Elaine A; Yu, Tianwei; Jones, Dean P; Ramirez-Zea, Manuel; Stein, Aryeh D | P30ES019776, U2CES030163 | J Endocr Soc (2020 Nov 01) |
33134764
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2020 |
| Metformin rescues Parkinson's disease phenotypes caused by hyperactive mitochondria. | Mor, Danielle E; Sohrabi, Salman; Kaletsky, Rachel; Keyes, William; Tartici, Alp; Kalia, Vrind ... | R01ES023839, U2CES030163 | Proc Natl Acad Sci U S A (2020 10 20) |
33024014
|
2020 |
| Network-Based Approaches for Multi-omics Integration. | Zhou, Guangyan; Li, Shuzhao; Xia, Jianguo | U2CES030163 | Methods Mol Biol (2020) |
31953831
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2020 |
| Omics Integration for Mitochondria Systems Biology. | Hu, Xin; Go, Young-Mi; Jones, Dean P | P30ES019776, U2CES030163 | Antioxid Redox Signal (2020 04 20) |
31891667
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2020 |
| Preclinical translation of exosomes derived from mesenchymal stem/stromal cells. | Elahi, Fanny M; Farwell, D Gregory; Nolta, Jan A; Anderson, Johnathon D | U2CES030158 | Stem Cells (2020 01) |
31381842
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2020 |
| Predicting in silico electron ionization mass spectra using quantum chemistry. | Wang, Shunyang; Kind, Tobias; Tantillo, Dean J; Fiehn, Oliver | U2CES030158 | J Cheminform (2020 Oct 20) |
33372633
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2020 |
| Reference Standardization for Quantification and Harmonization of Large-Scale Metabolomics. | Liu, Ken H; Nellis, Mary; Uppal, Karan; Ma, Chunyu; Tran, ViLinh; Liang, Yongliang; Walker, D ... | P30ES019776, P30ES023515, U2CES030163 | Anal Chem (2020 07 07) |
32490663
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2020 |
| Remodeling Lipids in the Transition from Chronic Liver Disease to Hepatocellular Carcinoma. | Ismail, Israa T; Elfert, Ashraf; Helal, Marwa; Salama, Ibrahim; El-Said, Hala; Fiehn, Oliver | U2CES030158 | Cancers (Basel) (2020 Dec 30) |
33396945
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2020 |
| Retip: Retention Time Prediction for Compound Annotation in Untargeted Metabolomics. | Bonini, Paolo; Kind, Tobias; Tsugawa, Hiroshi; Barupal, Dinesh Kumar; Fiehn, Oliver | U2CES030158 | Anal Chem (2020 06 02) |
32390414
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2020 |
| Structure of human GABAB receptor in an inactive state. | Park, Jinseo; Fu, Ziao; Frangaj, Aurel; Liu, Jonathan; Mosyak, Lidia; Shen, Tong; Slavkovich, ... | P30ES009089, U2CES030158 | Nature (2020 08) |
32581365
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2020 |
| Sub-nanoliter metabolomics via mass spectrometry to characterize volume-limited samples. | Li, Yafeng; Bouza, Marcos; Wu, Changsheng; Guo, Hengyu; Huang, Danning; Doron, Gilad; Temenoff ... | U2CES030167 | Nat Commun (2020 11 06) |
33159052
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2020 |
| Sugar Alcohols Have a Key Role in Pathogenesis of Chronic Liver Disease and Hepatocellular Carcinoma ... | Ismail, Israa T; Fiehn, Oliver; Elfert, Ashraf; Helal, Marwa; Salama, Ibrahim; El-Said, Hala | U2CES030158 | Cancers (Basel) (2020 Feb 19) |
32092943
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2020 |
| The Emerging and Diverse Roles of Bis(monoacylglycero) Phosphate Lipids in Cellular Physiology and D ... | Showalter, Megan R; Berg, Anastasia L; Nagourney, Alexander; Heil, Hailey; Carraway 3rd, Kermit ... | U2CES030158 | Int J Mol Sci (2020 Oct 29) |
33137979
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2020 |
| The Essential Toolbox of Data Science: Python, R, Git, and Docker. | Pittard, W Stephen; Li, Shuzhao | P30ES019776, U2CES030163 | Methods Mol Biol (2020) |
31953823
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2020 |
| The exposome and health: Where chemistry meets biology. | Vermeulen, Roel; Schymanski, Emma L; Barabási, Albert-László; Miller, Gary W | U2CES030163 | Science (2020 01 24) |
31974245
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2020 |
| Understanding mixed environmental exposures using metabolomics via a hierarchical community network ... | Li, Shuzhao; Cirillo, Piera; Hu, Xin; Tran, ViLinh; Krigbaum, Nickilou; Yu, Shaojun; Jones, D ... | P30ES019776, U2CES030163 | Reprod Toxicol (2020 03) |
31299210
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2020 |
| Utilizing cooled liquid chromatography and chemical derivatization to separate and quantify C3-epime ... | DeFelice, Brian C; Pedersen, Theresa L; Shorrosh, Hanan; Johnson, Randi K; Seifert, Jennifer A; ... | U2CES030158 | J Steroid Biochem Mol Biol (2020 03) |
31715316
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2020 |
| Who Is Metabolizing What? Discovering Novel Biomolecules in the Microbiome and the Organisms Who Mak ... | Couvillion, Sneha P; Agrawal, Neha; Colby, Sean M; Brandvold, Kristoffer R; Metz, Thomas O | U2CES030170 | Front Cell Infect Microbiol (2020) |
32850487
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2020 |
| Zika Virus Infection Results in Biochemical Changes Associated With RNA Editing, Inflammatory and An ... | Onyango, Maria G; Attardo, Geoffrey M; Kelly, Erin Taylor; Bialosuknia, Sean M; Stout, Jessica; ... | U2CES030158 | Front Microbiol (2020) |
33133033
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2020 |
| 17-α estradiol ameliorates age-associated sarcopenia and improves late-life physical function in mal ... | Garratt, Michael; Leander, Danielle; Pifer, Kaitlyn; Bower, Brian; Herrera, Jonathan J; Day, S ... | U2CES030158 | Aging Cell (2019 04) |
30740872
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2019 |
| A Comprehensive Plasma Metabolomics Dataset for a Cohort of Mouse Knockouts within the International ... | Barupal, Dinesh K; Zhang, Ying; Shen, Tong; Fan, Sili; Roberts, Bryan S; Fitzgerald, Patrick; ... | U2CES030158 | Metabolites (2019 May 22) |
31121816
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2019 |
| A Protocol to Compare Methods for Untargeted Metabolomics. | Wang, Lingjue; Naser, Fuad J; Spalding, Jonathan L; Patti, Gary J | R35ES028365 | Methods Mol Biol (2019) |
30315456
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2019 |
| Arginine and Carnitine Metabolites Are Altered in Diabetic Retinopathy. | Sumarriva, Katherine; Uppal, Karan; Ma, Chunyu; Herren, David J; Wang, Yating; Chocron, Isaac ... | P30ES019776, U2CES030163 | Invest Ophthalmol Vis Sci (2019 07 01) |
31323682
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2019 |
| Associations of Benzo(ghi)perylene and Heptachlorodibenzo-p-dioxin in Serum of Service Personnel Dep ... | Smith, Matthew Ryan; Woeller, Collynn F; Uppal, Karan; Thatcher, Thomas H; Walker, Douglas I; H ... | P30ES019776, U2CES030163 | J Occup Environ Med (2019 12) |
31800449
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2019 |
| Challenges in Identifying the Dark Molecules of Life. | Monge, María Eugenia; Dodds, James N; Baker, Erin S; Edison, Arthur S; Fernández, Facundo M | P42ES027704, U2CES030167 | Annu Rev Anal Chem (Palo Alto Calif) (2019 06 12) |
30883183
|
2019 |
| Correlations Between LC-MS/MS-Detected Glycomics and NMR-Detected Metabolomics in Caenorhabditis ele ... | Sheikh, M Osman; Tayyari, Fariba; Zhang, Sicong; Judge, Michael T; Weatherly, D Brent; Ponce, ... | U2CES030167 | Front Mol Biosci (2019) |
31316996
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2019 |
| Evaluation of In Silico Multifeature Libraries for Providing Evidence for the Presence of Small Mole ... | Nuñez, Jamie R; Colby, Sean M; Thomas, Dennis G; Tfaily, Malak M; Tolic, Nikola; Ulrich, Elin ... | U2CES030170 | J Chem Inf Model (2019 09 23) |
31430141
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2019 |
| Exogenous Monounsaturated Fatty Acids Promote a Ferroptosis-Resistant Cell State. | Magtanong, Leslie; Ko, Pin-Joe; To, Milton; Cao, Jennifer Yinuo; Forcina, Giovanni C; Tarangelo ... | R35ES028365 | Cell Chem Biol (2019 03 21) |
30686757
|
2019 |
| Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approac ... | Barupal, Dinesh Kumar; Fiehn, Oliver | U2CES030158 | Environ Health Perspect (2019 09) |
31557052
|
2019 |
| Hepatic monoacylglycerol acyltransferase 1 is induced by prolonged food deprivation to modulate the ... | Lutkewitte, Andrew J; McCommis, Kyle S; Schweitzer, George G; Chambers, Kari T; Graham, Mark J; ... | R35ES028365 | J Lipid Res (2019 03) |
30610082
|
2019 |
| Hepatocyte-Macrophage Acetoacetate Shuttle Protects against Tissue Fibrosis. | Puchalska, Patrycja; Martin, Shannon E; Huang, Xiaojing; Lengfeld, Justin E; Daniel, Bence; Gra ... | R35ES028365 | Cell Metab (2019 02 05) |
30449686
|
2019 |
| Impaired skeletal muscle mitochondrial pyruvate uptake rewires glucose metabolism to drive whole-bod ... | Sharma, Arpit; Oonthonpan, Lalita; Sheldon, Ryan D; Rauckhorst, Adam J; Zhu, Zhiyong; Tompkins, ... | R35ES028365 | Elife (2019 07 18) |
31305240
|
2019 |
| Inborn Errors of Metabolism in the Era of Untargeted Metabolomics and Lipidomics. | Ismail, Israa T; Showalter, Megan R; Fiehn, Oliver | U2CES030158 | Metabolites (2019 Oct 21) |
31640247
|
2019 |
| International Ring Trial of a High Resolution Targeted Metabolomics and Lipidomics Platform for Seru ... | Thompson, J Will; Adams, Kendra J; Adamski, Jerzy; Asad, Yasmin; Borts, David; Bowden, John A; ... | R35ES028365, U2CES030167 | Anal Chem (2019 11 19) |
31638379
|
2019 |
| ISiCLE: A Quantum Chemistry Pipeline for Establishing in Silico Collision Cross Section Libraries. | Colby, Sean M; Thomas, Dennis G; Nuñez, Jamie R; Baxter, Douglas J; Glaesemann, Kurt R; Brown, ... | U2CES030170 | Anal Chem (2019 04 02) |
30741529
|
2019 |
| Metabolome Wide Association Study of Serum Poly and Perfluoroalkyl Substances (PFASs) in Pregnancy a ... | Hu, Xin; Li, Shuzhao; Cirillo, Piera M; Krigbaum, Nickilou Y; Tran, ViLinh; Jones, Dean P; Coh ... | P30ES019776, U2CES030163 | Reprod Toxicol (2019 08) |
31121237
|
2019 |
| Metabolomics Analyses of 14 Classical Neurotransmitters by GC-TOF with LC-MS Illustrates Secretion o ... | Hook, Vivian; Kind, Tobias; Podvin, Sonia; Palazoglu, Mine; Tran, Carol; Toneff, Thomas; Samra ... | U2CES030158 | ACS Chem Neurosci (2019 03 20) |
30698015
|
2019 |
| Mitochondrial fusion supports increased oxidative phosphorylation during cell proliferation. | Yao, Cong-Hui; Wang, Rencheng; Wang, Yahui; Kung, Che-Pei; Weber, Jason D; Patti, Gary J | R35ES028365 | Elife (2019 01 29) |
30694178
|
2019 |
| New mass spectrometry technologies contributing towards comprehensive and high throughput omics anal ... | Couvillion, Sneha P; Zhu, Ying; Nagy, Gabe; Adkins, Joshua N; Ansong, Charles; Renslow, Ryan S ... | U2CES030170 | Analyst (2019 Jan 28) |
30507980
|
2019 |
| Ontology-based metabolomics data integration with quality control. | Buendia, Patricia; Bradley, Ray M; Taylor, Thomas J; Schymanski, Emma L; Patti, Gary J; Kabuka, ... | R35ES028365 | Bioanalysis (2019 Jun) |
31179719
|
2019 |
| Perspectives on Data Analysis in Metabolomics: Points of Agreement and Disagreement from the 2018 AS ... | Baker, Erin S; Patti, Gary J | R35ES028365 | J Am Soc Mass Spectrom (2019 Oct) |
31440979
|
2019 |
| Phytochelatin database: a resource for phytochelatin complexes of nutritional and environmental meta ... | Dennis, Kristine K; Uppal, Karan; Liu, Ken H; Ma, Chunyu; Liang, Bill; Go, Young-Mi; Jones, D ... | P30ES019776, U2CES030163 | Database (Oxford) (2019 01 01) |
31267134
|
2019 |
| Practical Guidelines for 13C-Based NMR Metabolomics. | Edison, Arthur S; Le Guennec, Adrien; Delaglio, Frank; Kupče, Ēriks | U2CES030167 | Methods Mol Biol (2019) |
31463840
|
2019 |
| Primed mesenchymal stem cells package exosomes with metabolites associated with immunomodulation. | Showalter, Megan R; Wancewicz, Benjamin; Fiehn, Oliver; Archard, Joehleen A; Clayton, Shannon; ... | U2CES030158 | Biochem Biophys Res Commun (2019 05 14) |
30926165
|
2019 |
| Rapid LC-MS/MS quantification of cancer related acetylated polyamines in human biofluids. | DeFelice, Brian C; Fiehn, Oliver | U2CES030158 | Talanta (2019 May 01) |
30683386
|
2019 |
| Serum and urinary metabolomics and outcomes in cirrhosis. | Bajaj, Jasmohan S; Fan, Sili; Thacker, Leroy R; Fagan, Andrew; Gavis, Edith; White, Melanie B; ... | U2CES030158 | PLoS One (2019) |
31560724
|
2019 |
| Sets of coregulated serum lipids are associated with Alzheimer's disease pathophysiology. | Barupal, Dinesh Kumar; Baillie, Rebecca; Fan, Sili; Saykin, Andrew J; Meikle, Peter J; Arnold, ... | U2CES030158 | Alzheimers Dement (Amst) (2019 Dec) |
31517024
|
2019 |
| SLIM Ultrahigh Resolution Ion Mobility Spectrometry Separations of Isotopologues and Isotopomers Rev ... | Wojcik, Roza; Nagy, Gabe; Attah, Isaac K; Webb, Ian K; Garimella, Sandilya V B; Weitz, Karl K; ... | U2CES030170 | Anal Chem (2019 09 17) |
31450886
|
2019 |
| Structure Annotation of All Mass Spectra in Untargeted Metabolomics. | Blaženović, Ivana; Kind, Tobias; Sa, Michael R; Ji, Jian; Vaniya, Arpana; Wancewicz, Benjamin; ... | U2CES030158 | Anal Chem (2019 02 05) |
30608141
|
2019 |
| Systematic Error Removal Using Random Forest for Normalizing Large-Scale Untargeted Lipidomics Data. | Fan, Sili; Kind, Tobias; Cajka, Tomas; Hazen, Stanley L; Tang, W H Wilson; Kaddurah-Daouk, Rim ... | U2CES030158 | Anal Chem (2019 03 05) |
30758187
|
2019 |
| Systems-level analysis of isotopic labeling in untargeted metabolomic data by X13CMS. | Llufrio, Elizabeth M; Cho, Kevin; Patti, Gary J | R35ES028365 | Nat Protoc (2019 07) |
31168088
|
2019 |
| The metabolome: A key measure for exposome research in epidemiology. | Walker, Douglas I; Valvi, Damaskini; Rothman, Nathaniel; Lan, Qing; Miller, Gary W; Jones, Dea ... | P30ES019776, P30ES023515, R21ES028903, R21ES029328, U2CES026561, U2CES030163 | Curr Epidemiol Rep (2019) |
31828002
|
2019 |
| Untargeted Metabolomics Differentiates l-Carnitine Treated Septic Shock 1-Year Survivors and Nonsurv ... | Evans, Charles R; Karnovsky, Alla; Puskarich, Michael A; Michailidis, George; Jones, Alan E; St ... | U2CES030164 | J Proteome Res (2019 05 03) |
30895797
|
2019 |
| Consumption of NADPH for 2-HG Synthesis Increases Pentose Phosphate Pathway Flux and Sensitizes Cell ... | Gelman, Susan J; Naser, Fuad; Mahieu, Nathaniel G; McKenzie, Lisa D; Dunn, Gavin P; Chheda, Mi ... | R35ES028365 | Cell Rep (2018 01 09) |
29320744
|
2018 |
| Distinctive Patterns of Flavonoid Biosynthesis in Roots and Nodules of Datisca glomerata and Medicag ... | Gifford, Isaac; Battenberg, Kai; Vaniya, Arpana; Wilson, Alex; Tian, Li; Fiehn, Oliver; Berry, ... | U2CES030158 | Front Plant Sci (2018) |
30364174
|
2018 |
| Diversity of Neuropeptide Cell-Cell Signaling Molecules Generated by Proteolytic Processing Revealed ... | Hook, Vivian; Lietz, Christopher B; Podvin, Sonia; Cajka, Tomas; Fiehn, Oliver | U2CES030158 | J Am Soc Mass Spectrom (2018 05) |
29667161
|
2018 |
| Identifying off-target effects of etomoxir reveals that carnitine palmitoyltransferase I is essentia ... | Yao, Cong-Hui; Liu, Gao-Yuan; Wang, Rencheng; Moon, Sung Ho; Gross, Richard W; Patti, Gary J | R35ES028365 | PLoS Biol (2018 03) |
29596410
|
2018 |
| Integrating bioinformatics approaches for a comprehensive interpretation of metabolomics datasets. | Barupal, Dinesh Kumar; Fan, Sili; Fiehn, Oliver | U2CES030158 | Curr Opin Biotechnol (2018 12) |
29413745
|
2018 |
| Isotope Tracing Untargeted Metabolomics Reveals Macrophage Polarization-State-Specific Metabolic Coo ... | Puchalska, Patrycja; Huang, Xiaojing; Martin, Shannon E; Han, Xianlin; Patti, Gary J; Crawford, ... | R35ES028365 | iScience (2018 Nov 30) |
30448730
|
2018 |
| Mechanism of High-Level Daptomycin Resistance in Corynebacterium striatum. | Goldner, Nicholas K; Bulow, Christopher; Cho, Kevin; Wallace, Meghan; Hsu, Fong-Fu; Patti, Gar ... | R35ES028365 | mSphere (2018 08 08) |
30089649
|
2018 |
| Metabolic and Transcriptional Modules Independently Diversify Plasma Cell Lifespan and Function. | Lam, Wing Y; Jash, Arijita; Yao, Cong-Hui; D'Souza, Lucas; Wong, Rachel; Nunley, Ryan M; Meare ... | R35ES028365 | Cell Rep (2018 08 28) |
30157439
|
2018 |
| Sorting cells alters their redox state and cellular metabolome. | Llufrio, Elizabeth M; Wang, Lingjue; Naser, Fuad J; Patti, Gary J | R35ES028365 | Redox Biol (2018 06) |
29627745
|
2018 |
| Trace Phosphate Improves ZIC-pHILIC Peak Shape, Sensitivity, and Coverage for Untargeted Metabolomic ... | Spalding, Jonathan L; Naser, Fuad J; Mahieu, Nathaniel G; Johnson, Stephen L; Patti, Gary J | R35ES028365 | J Proteome Res (2018 10 05) |
30160483
|
2018 |
| Transport-exclusion pharmacology to localize lactate dehydrogenase activity within cells. | Niu, Xiangfeng; Chen, Ying-Jr; Crawford, Peter A; Patti, Gary J | R35ES028365 | Cancer Metab (2018) |
30559963
|
2018 |
| Two complementary reversed-phase separations for comprehensive coverage of the semipolar and nonpola ... | Naser, Fuad J; Mahieu, Nathaniel G; Wang, Lingjue; Spalding, Jonathan L; Johnson, Stephen L; Pa ... | R35ES028365 | Anal Bioanal Chem (2018 Feb) |
29256075
|
2018 |
| Environmental Tobacco Smoke Alters Metabolic Systems in Adult Rats. | Barupal, Dinesh K; Pinkerton, Kent E; Hood, Carol; Kind, Tobias; Fiehn, Oliver | P30ES023513, U2CES030158 | Chem Res Toxicol (2016 11 21) |
27788581
|
2016 |
| Maximizing the value of metabolomic data. | Goeddel, L C; Patti, G J | R35ES028365 | Bioanalysis (2012 Sep) |
23046261
|
2012 |