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Viewing 48 publications
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Publication Title | Authors | Grant Number(s) | Journal (Pub date) | PubMed Link | Pub Year |
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Comparative Toxicogenomics Database (CTD): update 2021. | Davis, Allan Peter; Grondin, Cynthia J; Johnson, Robin J; Sciaky, Daniela; Wiegers, Jolene; Wie ... | P30ES025128, R01ES014065 | Nucleic Acids Res (2021 01 08) |
33068428
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2021 |
CTD Anatomy: analyzing chemical-induced phenotypes and exposures from an anatomical perspective, wit ... | Davis, Allan Peter; Wiegers, Thomas C; Wiegers, Jolene; Grondin, Cynthia J; Johnson, Robin J; S ... | R01ES014065 | Curr Res Toxicol (2021) |
33768211
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2021 |
Predicting molecular mechanisms, pathways, and health outcomes induced by Juul e-cigarette aerosol c ... | Grondin, Cynthia J; Davis, Allan Peter; Wiegers, Jolene A; Wiegers, Thomas C; Sciaky, Daniela; ... | R01ES014065, U24ES033155 | Curr Res Toxicol (2021) |
34458863
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2021 |
Regulatory Status of Pesticide Residues in Cannabis: Implications to Medical Use in Neurological Dis ... | Pinkhasova, Dorina V; Jameson, Laura E; Conrow, Kendra D; Simeone, Michael P; Davis, Allan Pete ... | R01ES014065 | Curr Res Toxicol (2021) |
34308371
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2021 |
Beyond the looking glass: recent advances in understanding the impact of environmental exposures on ... | Hollander, Jonathan A; Cory-Slechta, Deborah A; Jacka, Felice N; Szabo, Steven T; Guilarte, Tom ... | P30ES025128, R01ES014065 | Neuropsychopharmacology (2020 06) |
32109936
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2020 |
Community Approaches for Integrating Environmental Exposures into Human Models of Disease. | Thessen, Anne E; Grondin, Cynthia J; Kulkarni, Resham D; Brander, Susanne; Truong, Lisa; Vasile ... | R01ES014065 | Environ Health Perspect (2020 12) |
33369481
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2020 |
Leveraging the Comparative Toxicogenomics Database to Fill in Knowledge Gaps for Environmental Healt ... | Davis, Allan Peter; Wiegers, Thomas C; Grondin, Cynthia J; Johnson, Robin J; Sciaky, Daniela; W ... | P30ES025128, R01ES014065 | Toxicol Sci (2020 10 01) |
32663284
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2020 |
Integration of curated and high-throughput screening data to elucidate environmental influences on d ... | Kosnik, Marissa B; Planchart, Antonio; Marvel, Skylar W; Reif, David M; Mattingly, Carolyn J | P30ES025128, R01ES014065, T32ES007046 | Comput Toxicol (2019 Nov) |
31453412
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2019 |
Public data sources to support systems toxicology applications. | Davis, Allan Peter; Wiegers, Jolene; Wiegers, Thomas C; Mattingly, Carolyn J | P30ES025128, R01ES014065 | Curr Opin Toxicol (2019 Aug) |
33604492
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2019 |
The Comparative Toxicogenomics Database: update 2019. | Davis, Allan Peter; Grondin, Cynthia J; Johnson, Robin J; Sciaky, Daniela; McMorran, Roy; Wiege ... | P30ES025128, R01ES014065 | Nucleic Acids Res (2019 01 08) |
30247620
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2019 |
Accessing an Expanded Exposure Science Module at the Comparative Toxicogenomics Database. | Grondin, Cynthia J; Davis, Allan Peter; Wiegers, Thomas C; Wiegers, Jolene A; Mattingly, Caroly ... | P30ES025128, R01ES014065 | Environ Health Perspect (2018 01 18) |
29351546
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2018 |
Chemical-Induced Phenotypes at CTD Help Inform the Predisease State and Construct Adverse Outcome Pa ... | Davis, Allan Peter; Wiegers, Thomas C; Wiegers, Jolene; Johnson, Robin J; Sciaky, Daniela; Gron ... | P30ES025128, R01ES014065 | Toxicol Sci (2018 09 01) |
29846728
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2018 |
Heavy Metal Exposure and Metabolic Syndrome: Evidence from Human and Model System Studies. | Planchart, Antonio; Green, Adrian; Hoyo, Cathrine; Mattingly, Carolyn J | P30ES025128, R01ES014065, T32ES007046 | Curr Environ Health Rep (2018 03) |
29460222
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2018 |
Applying evolutionary genetics to developmental toxicology and risk assessment. | Leung, Maxwell C K; Procter, Andrew C; Goldstone, Jared V; Foox, Jonathan; DeSalle, Robert; Mat ... | R01ES014065, R01ES025748, R01ES025748 | Reprod Toxicol (2017 04) |
28267574
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2017 |
Informatics and Data Analytics to Support Exposome-Based Discovery for Public Health. | Manrai, Arjun K; Cui, Yuxia; Bushel, Pierre R; Hall, Molly; Karakitsios, Spyros; Mattingly, Ca ... | P30ES007048, R01ES014065 | Annu Rev Public Health (2017 Mar 20) |
28068484
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2017 |
The Comparative Toxicogenomics Database: update 2017. | Davis, Allan Peter; Grondin, Cynthia J; Johnson, Robin J; Sciaky, Daniela; King, Benjamin L; Mc ... | R01ES014065 | Nucleic Acids Res (2017 01 04) |
27651457
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2017 |
Advancing Exposure Science through Chemical Data Curation and Integration in the Comparative Toxicog ... | Grondin, Cynthia J; Davis, Allan Peter; Wiegers, Thomas C; King, Benjamin L; Wiegers, Jolene A; ... | P30ES025128, R01ES014065 | Environ Health Perspect (2016 Oct) |
27170236
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2016 |
Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chem ... | Wei, Chih-Hsuan; Peng, Yifan; Leaman, Robert; Davis, Allan Peter; Mattingly, Carolyn J; Li, Ji ... | R01ES014065 | Database (Oxford) (2016) |
26994911
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2016 |
BioCreative V CDR task corpus: a resource for chemical disease relation extraction. | Li, Jiao; Sun, Yueping; Johnson, Robin J; Sciaky, Daniela; Wei, Chih-Hsuan; Leaman, Robert; Da ... | R01ES014065 | Database (Oxford) (2016) |
27161011
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2016 |
Generating Gene Ontology-Disease Inferences to Explore Mechanisms of Human Disease at the Comparativ ... | Davis, Allan Peter; Wiegers, Thomas C; King, Benjamin L; Wiegers, Jolene; Grondin, Cynthia J; S ... | P30ES025128, R01ES014065 | PLoS One (2016) |
27171405
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2016 |
Laying a Community-Based Foundation for Data-Driven Semantic Standards in Environmental Health Scien ... | Mattingly, Carolyn J; Boyles, Rebecca; Lawler, Cindy P; Haugen, Astrid C; Dearry, Allen; Haende ... | R01ES014065 | Environ Health Perspect (2016 08) |
26871594
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2016 |
ToxEvaluator: an integrated computational platform to aid the interpretation of toxicology study-rel ... | Pelletier, D; Wiegers, T C; Enayetallah, A; Kibbey, C; Gosink, M; Koza-Taylor, P; Mattingly, ... | R01ES014065 | Database (Oxford) (2016) |
27161010
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2016 |
The Comparative Toxicogenomics Database's 10th year anniversary: update 2015. | Davis, Allan Peter; Grondin, Cynthia J; Lennon-Hopkins, Kelley; Saraceni-Richards, Cynthia; Scia ... | R01ES014065 | Nucleic Acids Res (2015 Jan) |
25326323
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2015 |
BioC interoperability track overview. | Comeau, Donald C; Batista-Navarro, Riza Theresa; Dai, Hong-Jie; Doğan, Rezarta Islamaj; Yepes, ... | R01ES014065 | Database (Oxford) (2014) |
24980129
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2014 |
Web services-based text-mining demonstrates broad impacts for interoperability and process simplific ... | Wiegers, Thomas C; Davis, Allan Peter; Mattingly, Carolyn J | R01ES014065 | Database (Oxford) (2014) |
24919658
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2014 |
A CTD-Pfizer collaboration: manual curation of 88,000 scientific articles text mined for drug-diseas ... | Davis, Allan Peter; Wiegers, Thomas C; Roberts, Phoebe M; King, Benjamin L; Lay, Jean M; Lennon ... | R01ES014065 | Database (Oxford) (2013) |
24288140
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2013 |
Text mining effectively scores and ranks the literature for improving chemical-gene-disease curation ... | Davis, Allan Peter; Wiegers, Thomas C; Johnson, Robin J; Lay, Jean M; Lennon-Hopkins, Kelley; S ... | R01ES014065 | PLoS One (2013) |
23613709
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2013 |
The Comparative Toxicogenomics Database: update 2013. | Davis, Allan Peter; Murphy, Cynthia Grondin; Johnson, Robin; Lay, Jean M; Lennon-Hopkins, Kelle ... | R01ES014065 | Nucleic Acids Res (2013 Jan) |
23093600
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2013 |
Aquatic models, genomics and chemical risk management. | Cheng, Keith C; Hinton, David E; Mattingly, Carolyn J; Planchart, Antonio | P42ES010356, R01ES014065 | Comp Biochem Physiol C Toxicol Pharmacol (2012 Jan) |
21763781
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2012 |
Collaborative biocuration--text-mining development task for document prioritization for curation. | Wiegers, Thomas C; Davis, Allan Peter; Mattingly, Carolyn J | R01ES014065 | Database (Oxford) (2012) |
23180769
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2012 |
Disease model curation improvements at Mouse Genome Informatics. | Bello, Susan M; Richardson, Joel E; Davis, Allan P; Wiegers, Thomas C; Mattingly, Carolyn J; Do ... | R01ES014065 | Database (Oxford) (2012) |
22434831
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2012 |
MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database. | Davis, Allan Peter; Wiegers, Thomas C; Rosenstein, Michael C; Mattingly, Carolyn J | R01ES014065 | Database (Oxford) (2012) |
22434833
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2012 |
Ranking transitive chemical-disease inferences using local network topology in the comparative toxic ... | King, Benjamin L; Davis, Allan Peter; Rosenstein, Michael C; Wiegers, Thomas C; Mattingly, Caro ... | R01ES014065 | PLoS One (2012) |
23144783
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2012 |
Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Dat ... | Davis, Allan Peter; Johnson, Robin J; Lennon-Hopkins, Kelley; Sciaky, Daniela; Rosenstein, Mich ... | R01ES014065 | Database (Oxford) (2012) |
23221299
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2012 |
Text mining for the biocuration workflow. | Hirschman, Lynette; Burns, Gully A P C; Krallinger, Martin; Arighi, Cecilia; Cohen, K Bretonnel ... | R01ES014065 | Database (Oxford) (2012) |
22513129
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2012 |
DiseaseComps: a metric that discovers similar diseases based upon common toxicogenomic profiles at C ... | Davis, Allan Peter; Rosenstein, Michael C; Wiegers, Thomas Conrad; Mattingly, Carolyn J | R01ES014065 | Bioinformation (2011) |
22125387
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2011 |
The Comparative Toxicogenomics Database: update 2011. | Davis, Allan Peter; King, Benjamin L; Mockus, Susan; Murphy, Cynthia G; Saraceni-Richards, Cynt ... | R01ES014065 | Nucleic Acids Res (2011 Jan) |
20864448
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2011 |
The curation paradigm and application tool used for manual curation of the scientific literature at ... | Davis, Allan Peter; Wiegers, Thomas C; Rosenstein, Michael C; Murphy, Cynthia G; Mattingly, Car ... | R01ES014065 | Database (Oxford) (2011) |
21933848
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2011 |
Chemical databases for environmental health and clinical research. | Mattingly, Carolyn J | R01ES014065 | Toxicol Lett (2009 Apr 10) |
18996453
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2009 |
Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease ne ... | Davis, Allan Peter; Murphy, Cynthia G; Saraceni-Richards, Cynthia A; Rosenstein, Michael C; Wieg ... | R01ES014065 | Nucleic Acids Res (2009 Jan) |
18782832
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2009 |
GeneComps and ChemComps: a new CTD metric to identify genes and chemicals with shared toxicogenomic ... | Davis, Allan Peter; Murphy, Cynthia G; Saraceni-Richards, Cynthia A; Rosenstein, Michael C; Wieg ... | R01ES014065 | Bioinformation (2009 Oct 15) |
20198196
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2009 |
Genetic and environmental pathways to complex diseases. | Gohlke, Julia M; Thomas, Reuben; Zhang, Yonqing; Rosenstein, Michael C; Davis, Allan P; Murphy, ... | R01ES014065 | BMC Syst Biol (2009) |
19416532
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2009 |
Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics ... | Wiegers, Thomas C; Davis, Allan Peter; Cohen, K Bretonnel; Hirschman, Lynette; Mattingly, Carol ... | R01ES014065 | BMC Bioinformatics (2009 Oct 08) |
19814812
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2009 |
The Comparative Toxicogenomics Database facilitates identification and understanding of chemical-gen ... | Davis, Allan P; Murphy, Cynthia G; Rosenstein, Michael C; Wiegers, Thomas C; Mattingly, Carolyn ... | R01ES014065 | BMC Med Genomics (2008 Oct 09) |
18845002
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2008 |
The Comparative Toxicogenomics Database (CTD): a resource for comparative toxicological studies. | Mattingly, C J; Rosenstein, M C; Colby, G T; Forrest Jr, J N; Boyer, J L | R01ES014065 | J Exp Zool A Comp Exp Biol (2006 Sep 01) |
16902965
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2006 |
The comparative toxicogenomics database: a cross-species resource for building chemical-gene interac ... | Mattingly, Carolyn J; Rosenstein, Michael C; Davis, Allan Peter; Colby, Glenn T; Forrest Jr, Jo ... | R01ES014065 | Toxicol Sci (2006 Aug) |
16675512
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2006 |
The Comparative Toxicogenomics Database (CTD). | Mattingly, Carolyn J; Colby, Glenn T; Forrest, John N; Boyer, James L | R01ES014065 | Environ Health Perspect (2003 May) |
12760826
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2003 |
Green fluorescent protein (GFP) as a marker of aryl hydrocarbon receptor (AhR) function in developin ... | Mattingly, C J; McLachlan, J A; Toscano Jr, W A | R01ES014065 | Environ Health Perspect (2001 Aug) |
11564622
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2001 |