These search results have not been confirmed by NIEHS and are therefore, not official. They are to be used only for general information and to inform the public and grantees on the breadth of research funded by NIEHS.
Viewing 48 publications
Export to Excel
(http://www.niehs.nih.gov//portfolio/index.cfm?do=portfolio.sciencecodepubs&&sc=82&topic=82&format=excel)
| Publication Title | Authors | Grant Number(s) | Journal (Pub date) | PubMed Link | Pub Year |
|---|---|---|---|---|---|
| Comparative Toxicogenomics Database (CTD): update 2021. | Davis, Allan Peter; Grondin, Cynthia J; Johnson, Robin J; Sciaky, Daniela; Wiegers, Jolene; Wie ... | P30ES025128, R01ES014065 | Nucleic Acids Res (2021 01 08) |
33068428
|
2021 |
| CTD Anatomy: analyzing chemical-induced phenotypes and exposures from an anatomical perspective, wit ... | Davis, Allan Peter; Wiegers, Thomas C; Wiegers, Jolene; Grondin, Cynthia J; Johnson, Robin J; S ... | R01ES014065 | Curr Res Toxicol (2021) |
33768211
|
2021 |
| Predicting molecular mechanisms, pathways, and health outcomes induced by Juul e-cigarette aerosol c ... | Grondin, Cynthia J; Davis, Allan Peter; Wiegers, Jolene A; Wiegers, Thomas C; Sciaky, Daniela; ... | R01ES014065, U24ES033155 | Curr Res Toxicol (2021) |
34458863
|
2021 |
| Regulatory Status of Pesticide Residues in Cannabis: Implications to Medical Use in Neurological Dis ... | Pinkhasova, Dorina V; Jameson, Laura E; Conrow, Kendra D; Simeone, Michael P; Davis, Allan Pete ... | R01ES014065 | Curr Res Toxicol (2021) |
34308371
|
2021 |
| Beyond the looking glass: recent advances in understanding the impact of environmental exposures on ... | Hollander, Jonathan A; Cory-Slechta, Deborah A; Jacka, Felice N; Szabo, Steven T; Guilarte, Tom ... | P30ES025128, R01ES014065 | Neuropsychopharmacology (2020 06) |
32109936
|
2020 |
| Community Approaches for Integrating Environmental Exposures into Human Models of Disease. | Thessen, Anne E; Grondin, Cynthia J; Kulkarni, Resham D; Brander, Susanne; Truong, Lisa; Vasile ... | R01ES014065 | Environ Health Perspect (2020 12) |
33369481
|
2020 |
| Leveraging the Comparative Toxicogenomics Database to Fill in Knowledge Gaps for Environmental Healt ... | Davis, Allan Peter; Wiegers, Thomas C; Grondin, Cynthia J; Johnson, Robin J; Sciaky, Daniela; W ... | P30ES025128, R01ES014065 | Toxicol Sci (2020 10 01) |
32663284
|
2020 |
| Integration of curated and high-throughput screening data to elucidate environmental influences on d ... | Kosnik, Marissa B; Planchart, Antonio; Marvel, Skylar W; Reif, David M; Mattingly, Carolyn J | P30ES025128, R01ES014065, T32ES007046 | Comput Toxicol (2019 Nov) |
31453412
|
2019 |
| Public data sources to support systems toxicology applications. | Davis, Allan Peter; Wiegers, Jolene; Wiegers, Thomas C; Mattingly, Carolyn J | P30ES025128, R01ES014065 | Curr Opin Toxicol (2019 Aug) |
33604492
|
2019 |
| The Comparative Toxicogenomics Database: update 2019. | Davis, Allan Peter; Grondin, Cynthia J; Johnson, Robin J; Sciaky, Daniela; McMorran, Roy; Wiege ... | P30ES025128, R01ES014065 | Nucleic Acids Res (2019 01 08) |
30247620
|
2019 |
| Accessing an Expanded Exposure Science Module at the Comparative Toxicogenomics Database. | Grondin, Cynthia J; Davis, Allan Peter; Wiegers, Thomas C; Wiegers, Jolene A; Mattingly, Caroly ... | P30ES025128, R01ES014065 | Environ Health Perspect (2018 01 18) |
29351546
|
2018 |
| Chemical-Induced Phenotypes at CTD Help Inform the Predisease State and Construct Adverse Outcome Pa ... | Davis, Allan Peter; Wiegers, Thomas C; Wiegers, Jolene; Johnson, Robin J; Sciaky, Daniela; Gron ... | P30ES025128, R01ES014065 | Toxicol Sci (2018 09 01) |
29846728
|
2018 |
| Heavy Metal Exposure and Metabolic Syndrome: Evidence from Human and Model System Studies. | Planchart, Antonio; Green, Adrian; Hoyo, Cathrine; Mattingly, Carolyn J | P30ES025128, R01ES014065, T32ES007046 | Curr Environ Health Rep (2018 03) |
29460222
|
2018 |
| Applying evolutionary genetics to developmental toxicology and risk assessment. | Leung, Maxwell C K; Procter, Andrew C; Goldstone, Jared V; Foox, Jonathan; DeSalle, Robert; Mat ... | R01ES014065, R01ES025748, R01ES025748 | Reprod Toxicol (2017 04) |
28267574
|
2017 |
| Informatics and Data Analytics to Support Exposome-Based Discovery for Public Health. | Manrai, Arjun K; Cui, Yuxia; Bushel, Pierre R; Hall, Molly; Karakitsios, Spyros; Mattingly, Ca ... | P30ES007048, R01ES014065 | Annu Rev Public Health (2017 Mar 20) |
28068484
|
2017 |
| The Comparative Toxicogenomics Database: update 2017. | Davis, Allan Peter; Grondin, Cynthia J; Johnson, Robin J; Sciaky, Daniela; King, Benjamin L; Mc ... | R01ES014065 | Nucleic Acids Res (2017 01 04) |
27651457
|
2017 |
| Advancing Exposure Science through Chemical Data Curation and Integration in the Comparative Toxicog ... | Grondin, Cynthia J; Davis, Allan Peter; Wiegers, Thomas C; King, Benjamin L; Wiegers, Jolene A; ... | P30ES025128, R01ES014065 | Environ Health Perspect (2016 Oct) |
27170236
|
2016 |
| Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chem ... | Wei, Chih-Hsuan; Peng, Yifan; Leaman, Robert; Davis, Allan Peter; Mattingly, Carolyn J; Li, Ji ... | R01ES014065 | Database (Oxford) (2016) |
26994911
|
2016 |
| BioCreative V CDR task corpus: a resource for chemical disease relation extraction. | Li, Jiao; Sun, Yueping; Johnson, Robin J; Sciaky, Daniela; Wei, Chih-Hsuan; Leaman, Robert; Da ... | R01ES014065 | Database (Oxford) (2016) |
27161011
|
2016 |
| Generating Gene Ontology-Disease Inferences to Explore Mechanisms of Human Disease at the Comparativ ... | Davis, Allan Peter; Wiegers, Thomas C; King, Benjamin L; Wiegers, Jolene; Grondin, Cynthia J; S ... | P30ES025128, R01ES014065 | PLoS One (2016) |
27171405
|
2016 |
| Laying a Community-Based Foundation for Data-Driven Semantic Standards in Environmental Health Scien ... | Mattingly, Carolyn J; Boyles, Rebecca; Lawler, Cindy P; Haugen, Astrid C; Dearry, Allen; Haende ... | R01ES014065 | Environ Health Perspect (2016 08) |
26871594
|
2016 |
| ToxEvaluator: an integrated computational platform to aid the interpretation of toxicology study-rel ... | Pelletier, D; Wiegers, T C; Enayetallah, A; Kibbey, C; Gosink, M; Koza-Taylor, P; Mattingly, ... | R01ES014065 | Database (Oxford) (2016) |
27161010
|
2016 |
| The Comparative Toxicogenomics Database's 10th year anniversary: update 2015. | Davis, Allan Peter; Grondin, Cynthia J; Lennon-Hopkins, Kelley; Saraceni-Richards, Cynthia; Scia ... | R01ES014065 | Nucleic Acids Res (2015 Jan) |
25326323
|
2015 |
| BioC interoperability track overview. | Comeau, Donald C; Batista-Navarro, Riza Theresa; Dai, Hong-Jie; Doğan, Rezarta Islamaj; Yepes, ... | R01ES014065 | Database (Oxford) (2014) |
24980129
|
2014 |
| Web services-based text-mining demonstrates broad impacts for interoperability and process simplific ... | Wiegers, Thomas C; Davis, Allan Peter; Mattingly, Carolyn J | R01ES014065 | Database (Oxford) (2014) |
24919658
|
2014 |
| A CTD-Pfizer collaboration: manual curation of 88,000 scientific articles text mined for drug-diseas ... | Davis, Allan Peter; Wiegers, Thomas C; Roberts, Phoebe M; King, Benjamin L; Lay, Jean M; Lennon ... | R01ES014065 | Database (Oxford) (2013) |
24288140
|
2013 |
| Text mining effectively scores and ranks the literature for improving chemical-gene-disease curation ... | Davis, Allan Peter; Wiegers, Thomas C; Johnson, Robin J; Lay, Jean M; Lennon-Hopkins, Kelley; S ... | R01ES014065 | PLoS One (2013) |
23613709
|
2013 |
| The Comparative Toxicogenomics Database: update 2013. | Davis, Allan Peter; Murphy, Cynthia Grondin; Johnson, Robin; Lay, Jean M; Lennon-Hopkins, Kelle ... | R01ES014065 | Nucleic Acids Res (2013 Jan) |
23093600
|
2013 |
| Aquatic models, genomics and chemical risk management. | Cheng, Keith C; Hinton, David E; Mattingly, Carolyn J; Planchart, Antonio | P42ES010356, R01ES014065 | Comp Biochem Physiol C Toxicol Pharmacol (2012 Jan) |
21763781
|
2012 |
| Collaborative biocuration--text-mining development task for document prioritization for curation. | Wiegers, Thomas C; Davis, Allan Peter; Mattingly, Carolyn J | R01ES014065 | Database (Oxford) (2012) |
23180769
|
2012 |
| Disease model curation improvements at Mouse Genome Informatics. | Bello, Susan M; Richardson, Joel E; Davis, Allan P; Wiegers, Thomas C; Mattingly, Carolyn J; Do ... | R01ES014065 | Database (Oxford) (2012) |
22434831
|
2012 |
| MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database. | Davis, Allan Peter; Wiegers, Thomas C; Rosenstein, Michael C; Mattingly, Carolyn J | R01ES014065 | Database (Oxford) (2012) |
22434833
|
2012 |
| Ranking transitive chemical-disease inferences using local network topology in the comparative toxic ... | King, Benjamin L; Davis, Allan Peter; Rosenstein, Michael C; Wiegers, Thomas C; Mattingly, Caro ... | R01ES014065 | PLoS One (2012) |
23144783
|
2012 |
| Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Dat ... | Davis, Allan Peter; Johnson, Robin J; Lennon-Hopkins, Kelley; Sciaky, Daniela; Rosenstein, Mich ... | R01ES014065 | Database (Oxford) (2012) |
23221299
|
2012 |
| Text mining for the biocuration workflow. | Hirschman, Lynette; Burns, Gully A P C; Krallinger, Martin; Arighi, Cecilia; Cohen, K Bretonnel ... | R01ES014065 | Database (Oxford) (2012) |
22513129
|
2012 |
| DiseaseComps: a metric that discovers similar diseases based upon common toxicogenomic profiles at C ... | Davis, Allan Peter; Rosenstein, Michael C; Wiegers, Thomas Conrad; Mattingly, Carolyn J | R01ES014065 | Bioinformation (2011) |
22125387
|
2011 |
| The Comparative Toxicogenomics Database: update 2011. | Davis, Allan Peter; King, Benjamin L; Mockus, Susan; Murphy, Cynthia G; Saraceni-Richards, Cynt ... | R01ES014065 | Nucleic Acids Res (2011 Jan) |
20864448
|
2011 |
| The curation paradigm and application tool used for manual curation of the scientific literature at ... | Davis, Allan Peter; Wiegers, Thomas C; Rosenstein, Michael C; Murphy, Cynthia G; Mattingly, Car ... | R01ES014065 | Database (Oxford) (2011) |
21933848
|
2011 |
| Chemical databases for environmental health and clinical research. | Mattingly, Carolyn J | R01ES014065 | Toxicol Lett (2009 Apr 10) |
18996453
|
2009 |
| Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease ne ... | Davis, Allan Peter; Murphy, Cynthia G; Saraceni-Richards, Cynthia A; Rosenstein, Michael C; Wieg ... | R01ES014065 | Nucleic Acids Res (2009 Jan) |
18782832
|
2009 |
| GeneComps and ChemComps: a new CTD metric to identify genes and chemicals with shared toxicogenomic ... | Davis, Allan Peter; Murphy, Cynthia G; Saraceni-Richards, Cynthia A; Rosenstein, Michael C; Wieg ... | R01ES014065 | Bioinformation (2009 Oct 15) |
20198196
|
2009 |
| Genetic and environmental pathways to complex diseases. | Gohlke, Julia M; Thomas, Reuben; Zhang, Yonqing; Rosenstein, Michael C; Davis, Allan P; Murphy, ... | R01ES014065 | BMC Syst Biol (2009) |
19416532
|
2009 |
| Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics ... | Wiegers, Thomas C; Davis, Allan Peter; Cohen, K Bretonnel; Hirschman, Lynette; Mattingly, Carol ... | R01ES014065 | BMC Bioinformatics (2009 Oct 08) |
19814812
|
2009 |
| The Comparative Toxicogenomics Database facilitates identification and understanding of chemical-gen ... | Davis, Allan P; Murphy, Cynthia G; Rosenstein, Michael C; Wiegers, Thomas C; Mattingly, Carolyn ... | R01ES014065 | BMC Med Genomics (2008 Oct 09) |
18845002
|
2008 |
| The Comparative Toxicogenomics Database (CTD): a resource for comparative toxicological studies. | Mattingly, C J; Rosenstein, M C; Colby, G T; Forrest Jr, J N; Boyer, J L | R01ES014065 | J Exp Zool A Comp Exp Biol (2006 Sep 01) |
16902965
|
2006 |
| The comparative toxicogenomics database: a cross-species resource for building chemical-gene interac ... | Mattingly, Carolyn J; Rosenstein, Michael C; Davis, Allan Peter; Colby, Glenn T; Forrest Jr, Jo ... | R01ES014065 | Toxicol Sci (2006 Aug) |
16675512
|
2006 |
| The Comparative Toxicogenomics Database (CTD). | Mattingly, Carolyn J; Colby, Glenn T; Forrest, John N; Boyer, James L | R01ES014065 | Environ Health Perspect (2003 May) |
12760826
|
2003 |
| Green fluorescent protein (GFP) as a marker of aryl hydrocarbon receptor (AhR) function in developin ... | Mattingly, C J; McLachlan, J A; Toscano Jr, W A | R01ES014065 | Environ Health Perspect (2001 Aug) |
11564622
|
2001 |