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Publication Detail

Title: Passing in Command Line Arguments and Parallel Cluster/Multicore Batching in R with batch.

Authors: Hoffmann, Thomas J

Published In J Stat Softw, (2011 Mar)

Abstract: It is often useful to rerun a command line R script with some slight change in the parameters used to run it - a new set of parameters for a simulation, a different dataset to process, etc. The R package batch provides a means to pass in multiple command line options, including vectors of values in the usual R format, easily into R. The same script can be setup to run things in parallel via different command line arguments. The R package batch also provides a means to simplify this parallel batching by allowing one to use R and an R-like syntax for arguments to spread a script across a cluster or local multicore/multiprocessor computer, with automated syntax for several popular cluster types. Finally it provides a means to aggregate the results together of multiple processes run on a cluster.

PubMed ID: 25431538 Exiting the NIEHS site

MeSH Terms: No MeSH terms associated with this publication

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