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| Publication Title | Authors | Grant Number(s) | Journal (Pub date) | PubMed Link | Pub Year |
|---|---|---|---|---|---|
| Analysis of cytosine deamination events in excision repair sequencing reads reveals mechanisms of in ... | Morledge-Hampton, Benjamin; Kalyanaraman, Ananth; Wyrick, John J | R01ES028698, R01ES032814 | Nucleic Acids Res (2024 Feb 28) |
38109317
|
2024 |
| Arsenic and UVR co-exposure results in unique gene expression profile identifying key co-carcinogeni ... | Speer, Rachel M; Yu, Hui; Zhou, Xixi; Nandi, Shuvro; Alexandrov, Ludmil; Guo, Yan; Hudson, La ... | P42ES025589, R01ES030993 | Toxicol Appl Pharmacol (2024 Jan) |
38036231
|
2024 |
| Evaluating topography of mutational signatures with SigProfilerTopography. | Otlu, Burçak; Alexandrov, Ludmil B | R01ES030993, R01ES032547 | bioRxiv (2024 Jan 09) |
38260507
|
2024 |
| Evidence for the involvement of keratinocyte-derived microvesicle particles in the photosensitivity ... | Christian, Lea; Manjrekar, Pranali; Henkels, Karen M; Rapp, Christine M; Annamraju, Risha; Loha ... | R01ES031087 | Photochem Photobiol (2024 Jan 29) |
38287748
|
2024 |
| Genome-wide impact of cytosine methylation and DNA sequence context on UV-induced CPD formation. | Wilson, Hannah E; Wyrick, John J | R01ES028698, R01ES032814, R21ES035139 | Environ Mol Mutagen (2024 Apr) |
37554110
|
2024 |
| Growth hormone and radiation therapy: friend, foe, or both? | Bahamondes Lorca, Verónica A; Wu, Shiyong | R01ES030425 | Endocr Relat Cancer (2024 Mar 01) |
38174978
|
2024 |
| High UV damage and low repair, but not cytosine deamination, stimulate mutation hotspots at ETS bind ... | Duan, Mingrui; Song, Shenghan; Wasserman, Hana; Lee, Po-Hsuen; Liu, Ke Jian; Gordân, Raluca; H ... | R01ES030993, R21ES035139 | Proc Natl Acad Sci U S A (2024 Jan 23) |
38241433
|
2024 |
| Lateral Flow Assays Biotesting by Utilizing Plasmonic Nanoparticles Made of Inexpensive Metals - Rep ... | Bahamondes Lorca, Veronica A; Ávalos-Ovando, Oscar; Sikeler, Christoph; Ijäs, Heini; Santiago, ... | R01ES030425 | bioRxiv (2024 Mar 19) |
38260353
|
2024 |
| The acid sphingomyelinase inhibitor imipramine enhances the release of UV photoproduct-containing DN ... | Carpenter, M Alexandra; Thyagarajan, Anita; Owens, Madison; Annamraju, Risha; Borchers, Christi ... | R01ES031087 | Photochem Photobiol (2024 Mar 03) |
38433456
|
2024 |
| The m6 A reader YTHDC2 regulates UVB-induced DNA damage repair and histone modification. | Yang, Zizhao; Verghese, Michelle; Yang, Seungwon; Shah, Palak; He, Yu-Ying | R01ES024373, R35ES031693 | Photochem Photobiol (2024 Jan 08) |
38190286
|
2024 |
| A half century of exploring DNA excision repair in chromatin. | Smerdon, Michael J; Wyrick, John J; Delaney, Sarah | R01ES028698, R01ES032814, R21ES035139 | J Biol Chem (2023 Sep) |
37527775
|
2023 |
| A tribute to Scott W. Burchiel, PHD. | Hudson, Laurie G; Campen, Matt; Liu, Ke Jian | P42ES025589, R01ES030993 | Toxicol Appl Pharmacol (2023 Jan 15) |
36526070
|
2023 |
| APOBEC3B regulates R-loops and promotes transcription-associated mutagenesis in cancer. | McCann, Jennifer L; Cristini, Agnese; Law, Emily K; Lee, Seo Yun; Tellier, Michael; Carpenter, ... | R01ES030993, R01ES032547 | Nat Genet (2023 Oct) |
37735199
|
2023 |
| Arsenic and cancer: Evidence and mechanisms. | Speer, Rachel M; Zhou, Xixi; Volk, Lindsay B; Liu, Ke Jian; Hudson, Laurie G | P42ES025589, R01ES030993 | Adv Pharmacol (2023) |
36858772
|
2023 |
| Arsenic is a potent co-mutagen of ultraviolet light. | Speer, Rachel M; Nandi, Shuvro P; Cooper, Karen L; Zhou, Xixi; Yu, Hui; Guo, Yan; Hudson, Lau ... | R01ES030993, R01ES032547 | bioRxiv (2023 Feb 23) |
36865271
|
2023 |
| Arsenic is a potent co-mutagen of ultraviolet light. | Speer, Rachel M; Nandi, Shuvro P; Cooper, Karen L; Zhou, Xixi; Yu, Hui; Guo, Yan; Hudson, Lau ... | R01ES030993, R01ES032547 | Commun Biol (2023 Dec 16) |
38104187
|
2023 |
| Assigning mutational signatures to individual samples and individual somatic mutations with SigProfi ... | Díaz-Gay, Marcos; Vangara, Raviteja; Barnes, Mark; Wang, Xi; Islam, S M Ashiqul; Vermes, Ian; ... | R01ES030993, R01ES032547 | bioRxiv (2023 Jul 11) |
37502962
|
2023 |
| Assigning mutational signatures to individual samples and individual somatic mutations with SigProfi ... | Díaz-Gay, Marcos; Vangara, Raviteja; Barnes, Mark; Wang, Xi; Islam, S M Ashiqul; Vermes, Ian; ... | R01ES030993, R01ES032547 | Bioinformatics (2023 Dec 01) |
38096571
|
2023 |
| Autophagy Paradox: Strategizing Treatment Modality in Melanoma. | Pangilinan, Christian; Xu, Xiaowei; Herlyn, Meenhard; Liang, Chengyu | R01ES029092 | Curr Treat Options Oncol (2023 Feb) |
36670319
|
2023 |
| Chromosomal fragile site breakage by EBV-encoded EBNA1 at clustered repeats. | Li, Julia Su Zhou; Abbasi, Ammal; Kim, Dong Hyun; Lippman, Scott M; Alexandrov, Ludmil B; Cleve ... | R01ES030993, R01ES032547 | Nature (2023 Apr) |
37046091
|
2023 |
| Comprehensive analysis of mutational signatures reveals distinct patterns and molecular processes ac ... | Thatikonda, Venu; Islam, S M Ashiqul; Autry, Robert J; Jones, Barbara C; Gröbner, Susanne N; Wa ... | R01ES030993, R01ES032547 | Nat Cancer (2023 Feb) |
36702933
|
2023 |
| Comprehensive Pan-Cancer Mutation Density Patterns in Enhancer RNA. | Zhang, Troy; Yu, Hui; Jiang, Limin; Bai, Yongsheng; Liu, Xiaoyi; Guo, Yan | R01ES030993 | Int J Mol Sci (2023 Dec 30) |
38203707
|
2023 |
| CoMutDB: the landscape of somatic mutation co-occurrence in cancers. | Jiang, Limin; Yu, Hui; Tang, Jijun; Guo, Yan | R01ES030993 | Bioinformatics (2023 Jan 01) |
36355452
|
2023 |
| Contributions of replicative and translesion DNA polymerases to mutagenic bypass of canonical and at ... | Vandenberg, Brittany N; Laughery, Marian F; Cordero, Cameron; Plummer, Dalton; Mitchell, Debra; ... | R01ES032814 | Nat Commun (2023 May 04) |
37142570
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2023 |
| Detecting recurrent passenger mutations in melanoma by targeted UV damage sequencing. | Selvam, Kathiresan; Sivapragasam, Smitha; Poon, Gregory M K; Wyrick, John J | R01ES028698, R01ES032814, R21ES035139 | Nat Commun (2023 May 11) |
37169747
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2023 |
| DNA damage and somatic mutations in mammalian cells after irradiation with a nail polish dryer. | Zhivagui, Maria; Hoda, Areebah; Valenzuela, Noelia; Yeh, Yi-Yu; Dai, Jason; He, Yudou; Nandi, ... | R01ES030993, R01ES032547, R35ES031638 | Nat Commun (2023 Jan 17) |
36650165
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2023 |
| Genome-wide maps of rare and atypical UV photoproducts reveal distinct patterns of damage formation ... | Bohm, Kaitlynne A; Morledge-Hampton, Benjamin; Stevison, Scott; Mao, Peng; Roberts, Steven A; W ... | R01ES028698, R01ES032814 | Proc Natl Acad Sci U S A (2023 Mar 07) |
36853943
|
2023 |
| Genome-wide maps of UVA and UVB mutagenesis in yeast reveal distinct causative lesions and mutationa ... | Laughery, Marian F; Plummer, Dalton A; Wilson, Hannah E; Vandenberg, Brittany N; Mitchell, Debr ... | R01ES028698, R01ES032814 | Genetics (2023 Jul 06) |
37170598
|
2023 |
| Mitotic tethering enables inheritance of shattered micronuclear chromosomes. | Trivedi, Prasad; Steele, Christopher D; Au, Franco K C; Alexandrov, Ludmil B; Cleveland, Don W | R01ES030993, R01ES032547 | Nature (2023 Jun) |
37316668
|
2023 |
| Moderate Low UVB Irradiation Modulates Tumor-associated Macrophages and Dendritic Cells and Promotes ... | Park, Gayoung; Cui, Yan-Hong; Yang, Seungwon; Sun, Ming; Wilkinson, Emma; Li, Haixia; Zhang, ... | R01ES024373 | Photochem Photobiol (2023 Mar) |
35962531
|
2023 |
| Mutation density analyses on long noncoding RNA reveal comparable patterns to protein-coding RNA and ... | Zhang, Troy; Yu, Hui; Bai, Yongsheng; Guo, Yan | R01ES030993 | Comput Struct Biotechnol J (2023) |
37860228
|
2023 |
| NAT10 regulates the repair of UVB-induced DNA damage and tumorigenicity. | Yang, Zizhao; Wilkinson, Emma; Cui, Yan-Hong; Li, Haixia; He, Yu-Ying | R01ES024373, R35ES031693 | Toxicol Appl Pharmacol (2023 Oct 15) |
37716414
|
2023 |
| New concepts on abnormal UV reactions in systemic lupus erythematosus and a screening tool for asses ... | Corbin, Danielle; Christian, Lea; Rapp, Christine M; Liu, Langni; Rohan, Craig A; Travers, Jef ... | R01ES031087 | Skin Res Technol (2023 Mar) |
36973991
|
2023 |
| Pan-cancer mutational signature surveys correlated mutational signature with geospatial environmenta ... | Bai, Judy; Ma, Katherine; Xia, Shangyang; Geng, Richard; Shen, Claire; Jiang, Limin; Gong, Xi ... | R01ES030993, R01ES032037 | Comput Struct Biotechnol J (2023) |
38022689
|
2023 |
| Radiation therapy produces microvesicle particle release in HaCaT keratinocytes. | Torralba, Ericson John V; Singh, Shikshita; Short, Robert F; Rapp, Christine M; Henkels, Karen ... | R01ES031087, R21ES033806 | Skin Res Technol (2023 May) |
37231923
|
2023 |
| Role of RNA modifications in carcinogenesis and carcinogen damage response. | Verghese, Michelle; Wilkinson, Emma; He, Yu-Ying | R01ES024373 | Mol Carcinog (2023 Jan) |
35560957
|
2023 |
| Rosacea pathogenesis and therapeutics: current treatments and a look at future targets. | Fisher, Garrett W; Travers, Jeffrey B; Rohan, Craig A | R01ES031087 | Front Med (Lausanne) (2023) |
38193038
|
2023 |
| Somatic mutation effects diffused over microRNA dysregulation. | Yu, Hui; Jiang, Limin; Li, Chung-I; Ness, Scott; Piccirillo, Sara G M; Guo, Yan | R01ES030993 | Bioinformatics (2023 Sep 02) |
37624931
|
2023 |
| Topical Photodynamic Therapy Generates Bioactive Microvesicle Particles: Evidence for a Pathway Invo ... | Oyebanji, Oladayo A; Brewer, Chad; Bayless, Sharlo; Schmeusser, Benjamin; Corbin, Danielle A; S ... | R01ES031087 | J Invest Dermatol (2023 Jul) |
36708950
|
2023 |
| Topography of mutational signatures in human cancer. | Otlu, Burçak; Díaz-Gay, Marcos; Vermes, Ian; Bergstrom, Erik N; Zhivagui, Maria; Barnes, Mark; ... | R01ES030993, R01ES032547 | Cell Rep (2023 Aug 29) |
37540596
|
2023 |
| Uncommon Petaloid Form of Seborrheic Dermatitis Seen in Fitzpatrick Skin Types V-VI. | Wu, TongFan; Frommeyer, Timothy C; Rohan, Craig A; Travers, Jeffrey B | R01ES031087 | J Clin Investig Dermatol (2023 Jul) |
38249156
|
2023 |
| Unraveling the impact of a germline heterozygous POLD1 frameshift variant in serrated polyposis synd ... | Bonjoch, Laia; Soares de Lima, Yasmin; Díaz-Gay, Marcos; Dotti, Isabella; Muñoz, Jenifer; Morei ... | R01ES030993, R01ES032547 | Front Mol Biosci (2023) |
36756361
|
2023 |
| Visualizing and exploring patterns of large mutational events with SigProfilerMatrixGenerator. | Khandekar, Azhar; Vangara, Raviteja; Barnes, Mark; Díaz-Gay, Marcos; Abbasi, Ammal; Bergstrom, ... | R01ES030993, R01ES032547 | BMC Genomics (2023 Aug 21) |
37605126
|
2023 |
| Acute ethanol exposure stimulates microvesicle particle generation in keratinocytes. | Awoyemi, Azeezat A; Borchers, Christina; Liu, Langni; Chen, Yanfang; Rapp, Christine M; Brewer, ... | R01ES031087 | Toxicol Lett (2022 Feb 01) |
34801640
|
2022 |
| ALKBH4 Stabilization Is Required for Arsenic-Induced 6mA DNA Methylation Inhibition, Keratinocyte Ma ... | Cui, Yan-Hong; Wilkinson, Emma; Peterson, Jack; He, Yu-Ying | R01ES024373 | Water (Basel) (2022 Nov 02) |
37207134
|
2022 |
| An overview of mutational and copy number signatures in human cancer. | Steele, Christopher D; Pillay, Nischalan; Alexandrov, Ludmil B | R01ES030993, R01ES032547 | J Pathol (2022 Jul) |
35420163
|
2022 |
| Arsenic impairs the lineage commitment of hematopoietic progenitor cells through the attenuation of ... | Medina, Sebastian; Zhang, Haikun; Santos-Medina, Laura V; Wan, Guanghua; Bolt, Alicia M; Zhou, ... | P42ES025589, R01ES030993 | Toxicol Appl Pharmacol (2022 Oct 01) |
35961411
|
2022 |
| Characterization of Caerulomycin A as a dual-targeting anticancer agent. | Tong, Lingying; Sun, Weichao; Wu, Shiyong; Han, Yong | R01ES030425 | Eur J Pharmacol (2022 May 05) |
35337812
|
2022 |
| Characterization of UVB and UVA-340 Lamps and Determination of Their Effects on ER Stress and DNA Da ... | Bahamondes Lorca, Verónica A; McCulloch, Mary Kate; Ávalos-Ovando, Óscar; Govorov, Alexander O; ... | R01ES030425 | Photochem Photobiol (2022 Sep) |
34932214
|
2022 |
| Comprehensive Analysis of Co-Mutations Identifies Cooperating Mechanisms of Tumorigenesis. | Jiang, Limin; Yu, Hui; Ness, Scott; Mao, Peng; Guo, Fei; Tang, Jijun; Guo, Yan | R01ES030993 | Cancers (Basel) (2022 Jan 14) |
35053577
|
2022 |
| Contribution of NADPH oxidase to the retention of UVR-induced DNA damage by arsenic. | Cooper, Karen L; Volk, Lindsay B; Dominguez, Dayna R; Duran, Antonia D; Ke Jian Liu, K J; Hudso ... | P42ES025589, R01ES030993 | Toxicol Appl Pharmacol (2022 Jan 01) |
34798142
|
2022 |
| Damage mapping techniques and the light they have shed on canonical and atypical UV photoproducts. | Bohm, Kaitlynne A; Wyrick, John J | R01ES028698, R01ES032814 | Front Genet (2022) |
36704334
|
2022 |
| Evidence for Systemic Reactive Oxygen Species in UVB-mediated Microvesicle Formation. | McGlone, Cameron L; Christian, Lea; Schmeusser, Benjamin; Liu, Langni; Chalfant, Charles E; Ste ... | R01ES031087 | Photochem Photobiol (2022 Jan) |
34324712
|
2022 |
| Examining clustered somatic mutations with SigProfilerClusters. | Bergstrom, Erik N; Kundu, Mousumy; Tbeileh, Noura; Alexandrov, Ludmil B | R01ES030993, R01ES032547 | Bioinformatics (2022 Jun 27) |
35595234
|
2022 |
| GTQC: Automated Genotyping Array Quality Control and Report. | Zhao, Shilin; Jiang, Limin; Yu, Hui; Guo, Yan | R01ES030993 | J Genomics (2022) |
35300047
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2022 |
| High-resolution mapping demonstrates inhibition of DNA excision repair by transcription factors. | Duan, Mingrui; Sivapragasam, Smitha; Antony, Jacob S; Ulibarri, Jenna; Hinz, John M; Poon, Gre ... | R01ES028698, R01ES032814 | Elife (2022 Mar 15) |
35289750
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2022 |
| Impacts of arsenic on Rad18 and translesion synthesis. | Volk, L B; Cooper, K L; Jiang, T; Paffett, M L; Hudson, L G | P42ES025589, R01ES030993 | Toxicol Appl Pharmacol (2022 Nov 01) |
36087615
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2022 |
| Is it time to reassess variant annotation? | Samuels, David C; Yu, Hui; Guo, Yan | R01ES030993 | Trends Genet (2022 Jun) |
35232614
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2022 |
| Low UVB Fluences Augment Microvesicle Particle Generation in Keratinocytes. | Thapa, Pariksha; Bhadri, Shweta; Borchers, Christina; Liu, Langni; Chen, Yanfang; Rapp, Christ ... | R01ES031087 | Photochem Photobiol (2022 Jan) |
34324709
|
2022 |
| Lyso-PAF, a biologically inactive phospholipid, contributes to RAF1 activation. | Gao, Xue; Liu, Yijie; Li, Yuancheng; Fan, Hao; Wu, Rong; Zhang, Rukang; Faubert, Brandon; He, ... | R01ES024373 | Mol Cell (2022 Jun 02) |
35417664
|
2022 |
| Mapping atypical UV photoproducts in vitro and across the S. cerevisiae genome. | Bohm, Kaitlynne A; Sivapragasam, Smitha; Wyrick, John J | R01ES028698, R01ES032814 | STAR Protoc (2022 Mar 18) |
35005641
|
2022 |
| Mapping clustered mutations in cancer reveals APOBEC3 mutagenesis of ecDNA. | Bergstrom, Erik N; Luebeck, Jens; Petljak, Mia; Khandekar, Azhar; Barnes, Mark; Zhang, Tongwu; ... | R01ES030993, R01ES032547 | Nature (2022 Feb) |
35140399
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2022 |
| Mechanisms of APOBEC3 mutagenesis in human cancer cells. | Petljak, Mia; Dananberg, Alexandra; Chu, Kevan; Bergstrom, Erik N; Striepen, Josefine; von Morg ... | R01ES030993, R01ES032547 | Nature (2022 Jul) |
35859169
|
2022 |
| Molecular mechanism of UV damage modulation in nucleosomes. | Stark, Bastian; Poon, Gregory M K; Wyrick, John J | R01ES028698, R01ES032814 | Comput Struct Biotechnol J (2022) |
36212527
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2022 |
| Neuroendocrine signaling in the skin with a special focus on the epidermal neuropeptides. | Slominski, Andrzej T; Slominski, Radomir M; Raman, Chander; Chen, Jake Y; Athar, Mohammad; Elme ... | R21ES034595 | Am J Physiol Cell Physiol (2022 Dec 01) |
36317800
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2022 |
| Platelet-activating factor and microvesicle particles as potential mediators for the toxicity associ ... | Rohan, Carson J; Lohade, Rushabh P; Brewer, Chad; Travers, Jeffrey B | R01ES031087 | Biofactors (2022 Nov) |
36342751
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2022 |
| Roles of RNA Modifications in Diverse Cellular Functions. | Wilkinson, Emma; Cui, Yan-Hong; He, Yu-Ying | R01ES024373 | Front Cell Dev Biol (2022) |
35350378
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2022 |
| SBSA: an online service for somatic binding sequence annotation. | Jiang, Limin; Guo, Fei; Tang, Jijun; Yu, Hui; Ness, Scott; Duan, Mingrui; Mao, Peng; Zhao, Y ... | R01ES030993 | Nucleic Acids Res (2022 01 11) |
34606615
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2022 |
| Set2 histone methyltransferase regulates transcription coupled-nucleotide excision repair in yeast. | Selvam, Kathiresan; Plummer, Dalton A; Mao, Peng; Wyrick, John J | R01ES028698, R01ES032814 | PLoS Genet (2022 Mar) |
35263330
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2022 |
| Signatures of copy number alterations in human cancer. | Steele, Christopher D; Abbasi, Ammal; Islam, S M Ashiqul; Bowes, Amy L; Khandekar, Azhar; Haase ... | R01ES030993, R01ES032547 | Nature (2022 Jun) |
35705804
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2022 |
| Small intestinal metabolomics analysis reveals differentially regulated metabolite profiles in obese ... | Meyer, Rachel K; Bime, Megan A; Duca, Frank A | R01ES030993 | Metabolomics (2022 Jul 23) |
35871176
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2022 |
| Tips, Tricks, and Potential Pitfalls of CRISPR Genome Editing in Saccharomyces cerevisiae. | Antony, Jacob S; Hinz, John M; Wyrick, John J | R01ES028698, R01ES032814 | Front Bioeng Biotechnol (2022) |
35706506
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2022 |
| Topical application of gemcitabine generates microvesicle particles in human and murine skin. | Thyagarajan, Anita; Awasthi, Krishna; Rapp, Christine M; Johnson, R Michael; Chen, Yanfang; Mil ... | R01ES031087, R21ES033806 | Biofactors (2022 Nov) |
36504167
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2022 |
| Ultraviolet B Irradiation Alters the Level and miR Contents of Exosomes Released by Keratinocytes in ... | Wang, Jinju; Pothana, Kartheek; Chen, Shuzhen; Sawant, Harshal; Travers, Jeffrey B; Bihl, Ji; ... | R01ES031087 | Photochem Photobiol (2022 Sep) |
34931322
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2022 |
| UVB-Induced Microvesicle Particle Release and Its Effects on the Cutaneous Microenvironment. | Frommeyer, Timothy C; Gilbert, Michael M; Brittain, Garrett V; Wu, Tongfan; Nguyen, Trang Q; Ro ... | R01ES031087 | Front Immunol (2022) |
35603177
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2022 |
| A streamlined solution for processing, elucidating and quality control of cyclobutane pyrimidine dim ... | Sheng, Quanhu; Yu, Hui; Duan, Mingrui; Ness, Scott; He, Jiapeng; Kang, Huining; Jiang, Limin; ... | R01ES030993 | Nat Protoc (2021 04) |
33731963
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2021 |
| Arsenic co-carcinogenesis: Inhibition of DNA repair and interaction with zinc finger proteins. | Zhou, Xixi; Speer, Rachel M; Volk, Lindsay; Hudson, Laurie G; Liu, Ke Jian | P42ES025589, R01ES030993 | Semin Cancer Biol (2021 Nov) |
33984503
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2021 |
| Autophagy of the m6A mRNA demethylase FTO is impaired by low-level arsenic exposure to promote tumor ... | Cui, Yan-Hong; Yang, Seungwon; Wei, Jiangbo; Shea, Christopher R; Zhong, Wen; Wang, Fang; Shah ... | R01ES024373 | Nat Commun (2021 Apr 12) |
33846348
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2021 |
| CIRP Sensitizes Cancer Cell Responses to Ionizing Radiation. | Sun, Weichao; Bergmeier, Adele P; Liao, Yi; Wu, Shiyong; Tong, Lingying | R01ES030425 | Radiat Res (2021 Jan 01) |
33429432
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2021 |
| Context-Dependent Roles of RNA Modifications in Stress Responses and Diseases. | Wilkinson, Emma; Cui, Yan-Hong; He, Yu-Ying | R01ES024373 | Int J Mol Sci (2021 Feb 16) |
33669361
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2021 |
| CTCF binding modulates UV damage formation to promote mutation hot spots in melanoma. | Sivapragasam, Smitha; Stark, Bastian; Albrecht, Amanda V; Bohm, Kaitlynne A; Mao, Peng; Emehise ... | R01ES028698, R01ES032814 | EMBO J (2021 Oct 18) |
34487363
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2021 |
| CTCF puts a new twist on UV damage and repair in skin cancer. | Stark, Bastian; Poon, Gregory M K; Wyrick, John J | R01ES028698, R01ES032814 | Mol Cell Oncol (2021) |
35419468
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2021 |
| EditPredict: Prediction of RNA editable sites with convolutional neural network. | Wang, Jiandong; Ness, Scott; Brown, Roger; Yu, Hui; Oyebamiji, Olufunmilola; Jiang, Limin; She ... | R01ES030993 | Genomics (2021 11) |
34562567
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2021 |
| Evidence for microvesicle particles in UVB-mediated IL-8 generation in keratinocytes. | Bhadri, Shweta; Thapa, Pariksha; Chen, Yanfang; Rapp, Christine M; Travers, Jeffrey B | R01ES031087 | J Clin Investig Dermatol (2021 Dec) |
34950767
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2021 |
| Genomic profiling of late-onset basal cell carcinomas from two brothers with nevoid basal cell carci ... | Hasan Ali, O; Yurchenko, A A; Pavlova, O; Sartori, A; Bomze, D; Higgins, R; Ring, S S; Hartma ... | R01ES030481 | J Eur Acad Dermatol Venereol (2021 Feb) |
32564428
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2021 |
| Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1. | Klionsky, Daniel J; Abdel-Aziz, Amal Kamal; Abdelfatah, Sara; Abdellatif, Mahmoud; Abdoli, Asgh ... | P30ES006694, R01ES029092, R01ES031253 | Autophagy (2021 Jan) |
33634751
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2021 |
| Keratinocyte autophagy enables the activation of keratinocytes and fibroblastsand facilitates wound ... | Qiang, Lei; Yang, Seungwon; Cui, Yan-Hong; He, Yu-Ying | R01ES024373 | Autophagy (2021 09) |
32866426
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2021 |
| Keratinocyte-derived microvesicle particles mediate ultraviolet B radiation-induced systemic immunos ... | Liu, Langni; Awoyemi, Azeezat A; Fahy, Katherine E; Thapa, Pariksha; Borchers, Christina; Wu, ... | R01ES031087 | J Clin Invest (2021 May 17) |
33830943
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2021 |
| Mathermycin, an anti-cancer molecule that targets cell surface phospholipids. | Cheng, Cuilin; Chen, Haotong; Tong, Lingying; Li, Zhenyu; Yang, Yuehan; Wu, Shiyong; Wiseman, ... | R01ES030425 | Toxicol Appl Pharmacol (2021 02 15) |
33476679
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2021 |
| METTL14 facilitates global genome repair and suppresses skin tumorigenesis. | Yang, Zizhao; Yang, Seungwon; Cui, Yan-Hong; Wei, Jiangbo; Shah, Palak; Park, Gayoung; Cui, X ... | R01ES024373 | Proc Natl Acad Sci U S A (2021 08 31) |
34452996
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2021 |
| Mutperiod: Analysis of periodic mutation rates in nucleosomes. | Morledge-Hampton, Benjamin; Wyrick, John J | R01ES028698, R01ES032814 | Comput Struct Biotechnol J (2021) |
34527191
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2021 |
| New Insights Into the Pathologic Roles of the Platelet-Activating Factor System. | Travers, Jeffrey B; Rohan, Joyce G; Sahu, Ravi P | R01ES031087 | Front Endocrinol (Lausanne) (2021) |
33796070
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2021 |
| Predicting MHC class I binder: existing approaches and a novel recurrent neural network solution. | Jiang, Limin; Yu, Hui; Li, Jiawei; Tang, Jijun; Guo, Yan; Guo, Fei | R01ES030993 | Brief Bioinform (2021 11 05) |
34131696
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2021 |
| Significance and limitations of the use of next-generation sequencing technologies for detecting mut ... | Abbasi, Ammal; Alexandrov, Ludmil B | R01ES030993, R01ES032547 | DNA Repair (Amst) (2021 Nov) |
34411908
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2021 |
| Transcription-coupled nucleotide excision repair: New insights revealed by genomic approaches. | Duan, Mingrui; Speer, Rachel M; Ulibarri, Jenna; Liu, Ke Jian; Mao, Peng | R01ES030993 | DNA Repair (Amst) (2021 07) |
33894524
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2021 |
| Uranium directly interacts with the DNA repair protein poly (ADP-ribose) polymerase 1. | Zhou, Xixi; Xue, Bingye; Medina, Sebastian; Burchiel, Scott W; Liu, Ke Jian | P42ES025589, R01ES030993 | Toxicol Appl Pharmacol (2021 01 01) |
33279515
|
2021 |
| UVB-induced eIF2α phosphorylation in keratinocytes depends on decreased ATF4, GADD34 and CReP expres ... | Bahamondes Lorca, Verónica A; Bastidas Mayorga, Bernardo D; Tong, Lingying; Wu, Shiyong | R01ES030425 | Life Sci (2021 Dec 01) |
34637792
|
2021 |
| Vitamin D and Vitamin D Analogs as Adjuncts to Field Therapy Treatments for Actinic Keratoses: Curre ... | Sattouf, Zafer; Repas, Steven J; Travers, Jeffrey B; Rohan, Craig A | R01ES031087 | J Skin Cancer (2021) |
34306760
|
2021 |
| How autophagy is tied to inflammation and cancer. | Zhu, Qing; Wang, Ruifang; Nemecio, Dali; Liang, Chengyu | R01ES029092 | Mol Cell Oncol (2020) |
32158928
|
2020 |
| Role of constitutive nitric oxide synthases in the dynamic regulation of the autophagy response of k ... | Bahamondes Lorca, Verónica A; Wu, Shiyong | R01ES030425 | Photochem Photobiol Sci (2020 Nov 11) |
33030168
|
2020 |
| Role of Nucleotide Excision Repair in Cisplatin Resistance. | Duan, Mingrui; Ulibarri, Jenna; Liu, Ke Jian; Mao, Peng | R01ES030993 | Int J Mol Sci (2020 Dec 04) |
33291532
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2020 |
| Stabilization of ERK-Phosphorylated METTL3 by USP5 Increases m6A Methylation. | Sun, Hui-Lung; Zhu, Allen C; Gao, Yawei; Terajima, Hideki; Fei, Qili; Liu, Shun; Zhang, Linda ... | R01ES024373 | Mol Cell (2020 11 19) |
33217317
|
2020 |
| Thermal Burn Injury Generates Bioactive Microvesicles: Evidence for a Novel Transport Mechanism for ... | Liu, Langni; Fahy, Katherine E; Awoyemi, Azeezat A; Thapa, Pariksha; Kelly, Lisa E; Chen, Jay; ... | R01ES031087 | J Immunol (2020 07 01) |
32434939
|
2020 |
| UVRAG in autophagy, inflammation, and cancer. | Song, Ying; Quach, Christine; Liang, Chengyu | R01ES029092 | Autophagy (2020 02) |
31905312
|
2020 |
| A truncating mutation in the autophagy gene UVRAG drives inflammation and tumorigenesis in mice. | Quach, Christine; Song, Ying; Guo, Hongrui; Li, Shun; Maazi, Hadi; Fung, Marshall; Sands, Nat ... | R01ES029092 | Nat Commun (2019 Dec 12) |
31831743
|
2019 |
| Darkening with UVRAG. | Li, Shun; Jang, Gyu-Beom; Quach, Christine; Liang, Chengyu | R01ES029092 | Autophagy (2019 02) |
30209981
|
2019 |
| m6A mRNA demethylase FTO regulates melanoma tumorigenicity and response to anti-PD-1 blockade. | Yang, Seungwon; Wei, Jiangbo; Cui, Yan-Hong; Park, Gayoung; Shah, Palak; Deng, Yu; Aplin, And ... | R01ES024373 | Nat Commun (2019 Jun 25) |
31239444
|
2019 |
| Revisiting the role of autophagy in melanoma. | Li, Shun; Song, Ying; Quach, Christine; Nemecio, Dali; Liang, Chengyu | R01ES029092 | Autophagy (2019 10) |
31242070
|
2019 |
| The Role of Dynamic m6 A RNA Methylation in Photobiology. | Robinson, Myles; Shah, Palak; Cui, Yan-Hong; He, Yu-Ying | R01ES024373 | Photochem Photobiol (2019 01) |
29729018
|
2019 |
| Transcriptional regulation of autophagy-lysosomal function in BRAF-driven melanoma progression and c ... | Li, Shun; Song, Ying; Quach, Christine; Guo, Hongrui; Jang, Gyu-Beom; Maazi, Hadi; Zhao, Shih ... | R01ES029092 | Nat Commun (2019 Apr 12) |
30979895
|
2019 |
| Mechanisms and prevention of UV-induced melanoma. | Sample, Ashley; He, Yu-Ying | R01ES024373 | Photodermatol Photoimmunol Photomed (2018 Jan) |
28703311
|
2018 |
| Phosphorylation of xeroderma pigmentosum group C regulates ultraviolet-induced DNA damage repair. | Shah, Palak; Zhao, Baozhong; Qiang, Lei; He, Yu-Ying | R01ES024373 | Nucleic Acids Res (2018 06 01) |
29660033
|
2018 |
| The Autophagy Receptor Adaptor p62 is Up-regulated by UVA Radiation in Melanocytes and in Melanoma C ... | Sample, Ashley; Zhao, Baozhong; Wu, Chunli; Qian, Steven; Shi, Xianglin; Aplin, Andrew; He, Y ... | R01ES024373 | Photochem Photobiol (2018 May) |
28715145
|
2018 |
| The Mechanism of CIRP in Regulation of STAT3 Phosphorylation and Bag-1/S Expression Upon UVB Radiati ... | Sun, Weichao; Liao, Yi; Yi, Qian; Wu, Shiyong; Tang, Liling; Tong, Lingying | R01ES030425 | Photochem Photobiol (2018 Nov) |
29981150
|
2018 |
| Adaptor protein p62 promotes skin tumor growth and metastasis and is induced by UVA radiation. | Sample, Ashley; Zhao, Baozhong; Qiang, Lei; He, Yu-Ying | R01ES024373 | J Biol Chem (2017 09 08) |
28724634
|
2017 |
| Arsenic Induces p62 Expression to Form a Positive Feedback Loop with Nrf2 in Human Epidermal Keratin ... | Shah, Palak; Trinh, Elaine; Qiang, Lei; Xie, Lishi; Hu, Wen-Yang; Prins, Gail S; Pi, Jingbo; ... | R01ES024373 | Molecules (2017 Jan 24) |
28125038
|
2017 |
| Autophagy gene ATG7 regulates ultraviolet radiation-induced inflammation and skin tumorigenesis. | Qiang, Lei; Sample, Ashley; Shea, Christopher R; Soltani, Keyoumars; Macleod, Kay F; He, Yu-Yi ... | R01ES024373 | Autophagy (2017) |
28933598
|
2017 |
| Autophagy in UV Damage Response. | Sample, Ashley; He, Yu-Ying | R01ES024373 | Photochem Photobiol (2017 Jul) |
27935061
|
2017 |
| Distinct Role of Sesn2 in Response to UVB-Induced DNA Damage and UVA-Induced Oxidative Stress in Mel ... | Zhao, Baozhong; Shah, Palak; Qiang, Lei; He, Tong-Chuan; Budanov, Andrey; He, Yu-Ying | R01ES024373 | Photochem Photobiol (2017 Jan) |
27463837
|
2017 |
| Epidermal SIRT1 regulates inflammation, cell migration, and wound healing. | Qiang, Lei; Sample, Ashley; Liu, Han; Wu, Xiaoyang; He, Yu-Ying | R01ES024373 | Sci Rep (2017 Oct 26) |
29074993
|
2017 |
| NF-κB Signaling Activation Induced by Chloroquine Requires Autophagosome, p62 Protein, and c-Jun N-t ... | Yang, Seungwon; Qiang, Lei; Sample, Ashley; Shah, Palak; He, Yu-Ying | R01ES024373 | J Biol Chem (2017 02 24) |
28082672
|
2017 |
| Autophagy positively regulates DNA damage recognition by nucleotide excision repair. | Qiang, Lei; Zhao, Baozhong; Shah, Palak; Sample, Ashley; Yang, Seungwon; He, Yu-Ying | R01ES024373 | Autophagy (2016) |
26565512
|
2016 |
| Mitochondrial dysfunction activates the AMPK signaling and autophagy to promote cell survival. | Zhao, Baozhong; Qiang, Lei; Joseph, Joy; Kalyanaraman, Balaraman; Viollet, Benoit; He, Yu-Ying | R01ES024373 | Genes Dis (2016 Mar) |
28066797
|
2016 |
| TGF-β signaling links E-cadherin loss to suppression of nucleotide excision repair. | Qiang, L; Shah, P; Barcellos-Hoff, M H; He, Y Y | R01ES024373 | Oncogene (2016 Jun 23) |
26477308
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2016 |