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Who We Fund: Publications associated with Application Of Technology To Disease - Metabolomics Technology

These search results have not been confirmed by NIEHS and are therefore, not official. They are to be used only for general information and to inform the public and grantees on the breadth of research funded by NIEHS.

Viewing 58 publications
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Publication Title Authors Grant Number(s) Journal (Pub date) PubMed Link Pub Year
A Bioinformatics Primer to Data Science, with Examples for Metabolomics.   Pittard, W Stephen; Villaveces, Cecilia Keeko; Li, Shuzhao P30ES019776, U2CES026560, U2CES030163 Methods Mol Biol (2020) 31953822 Exiting the NIEHS site 2020 
A vision for exposome epidemiology: The pregnancy exposome in relation to breast cancer in the Child ...   Jones, Dean P; Cohn, Barbara A R01ES023485, U2CES026560, U2CES030163 Reprod Toxicol (2020 Mar) 32197999 Exiting the NIEHS site 2020 
Alteration of Cellular Reduction Potential Will Change 64Cu-ATSM Signal With or Without Hypoxia.   Floberg, John M; Wang, Lingjue; Bandara, Nilantha; Rashmi, Ramachandran; Mpoy, Cedric; Garbow, ... R35ES028365 J Nucl Med (2020 Mar) 31586008 Exiting the NIEHS site 2020 
Chemical Discovery in the Era of Metabolomics.   Sindelar, Miriam; Patti, Gary J R35ES028365 J Am Chem Soc (2020 May 20) 32275430 Exiting the NIEHS site 2020 
Crystal-C: A Computational Tool for Refinement of Open Search Results.   Chang, Hui-Yin; Kong, Andy T; da Veiga Leprevost, Felipe; Avtonomov, Dmitry M; Haynes, Sarah E; ... U2CES030164 J Proteome Res (2020 Jun 05) 32338005 Exiting the NIEHS site 2020 
Differences in plasma metabolites related to Alzheimer's disease, APOE ε4 status, and ethnicity.   Vardarajan, Badri; Kalia, Vrinda; Manly, Jennifer; Brickman, Adam; Reyes-Dumeyer, Dolly; Lantig ... R01ES023839, U2CES030163 Alzheimers Dement (N Y) (2020) 32377558 Exiting the NIEHS site 2020 
Dose-Response Metabolomics To Understand Biochemical Mechanisms and Off-Target Drug Effects with the ...   Yao, Cong-Hui; Wang, Lingjue; Stancliffe, Ethan; Sindelar, Miriam; Cho, Kevin; Yin, Weitong; W ... R35ES028365 Anal Chem (2020 01 21) 31804057 Exiting the NIEHS site 2020 
JARID1a Ablation in the Liver Alters Systemic Metabolism and Adaptation to Feeding.   DiTacchio, Kacee Ann; Kalinowska, Diana; Saran, Anand Rajamani; Byrne, Ashley; Vollmers, Christ ... U2CES030158 Cell Rep (2020 May 26) 32460011 Exiting the NIEHS site 2020 
Leveraging insights into cancer metabolism-a symposium report.   Cable, Jennifer; Finley, Lydia; Tu, Benjamin P; Patti, Gary J; Oliver, Trudy G; Vardhana, Sant ... R35ES028365 Ann N Y Acad Sci (2020 02) 31792987 Exiting the NIEHS site 2020 
Metabolome Wide Association Study of serum DDT and DDE in Pregnancy and Early Postpartum.   Hu, Xin; Li, Shuzhao; Cirillo, Piera; Krigbaum, Nickilou; Tran, ViLinh; Ishikawa, Tomoko; La M ... P30ES019776, U2CES030163 Reprod Toxicol (2020 Mar) 31102720 Exiting the NIEHS site 2020 
Network-Based Approaches for Multi-omics Integration.   Zhou, Guangyan; Li, Shuzhao; Xia, Jianguo U2CES030163 Methods Mol Biol (2020) 31953831 Exiting the NIEHS site 2020 
Preclinical translation of exosomes derived from mesenchymal stem/stromal cells.   Elahi, Fanny M; Farwell, D Gregory; Nolta, Jan A; Anderson, Johnathon D U2CES030158 Stem Cells (2020 01) 31381842 Exiting the NIEHS site 2020 
Sugar Alcohols Have a Key Role in Pathogenesis of Chronic Liver Disease and Hepatocellular Carcinoma ...   Ismail, Israa T; Fiehn, Oliver; Elfert, Ashraf; Helal, Marwa; Salama, Ibrahim; El-Said, Hala U2CES030158 Cancers (Basel) (2020 Feb 19) 32092943 Exiting the NIEHS site 2020 
The Essential Toolbox of Data Science: Python, R, Git, and Docker.   Pittard, W Stephen; Li, Shuzhao P30ES019776, U2CES026560, U2CES030163 Methods Mol Biol (2020) 31953823 Exiting the NIEHS site 2020 
The exposome and health: Where chemistry meets biology.   Vermeulen, Roel; Schymanski, Emma L; Barabási, Albert-László; Miller, Gary W U2CES030163 Science (2020 01 24) 31974245 Exiting the NIEHS site 2020 
Understanding mixed environmental exposures using metabolomics via a hierarchical community network ...   Li, Shuzhao; Cirillo, Piera; Hu, Xin; Tran, ViLinh; Krigbaum, Nickilou; Yu, Shaojun; Jones, D ... P30ES019776, U2CES030163 Reprod Toxicol (2020 Mar) 31299210 Exiting the NIEHS site 2020 
Utilizing cooled liquid chromatography and chemical derivatization to separate and quantify C3-epime ...   DeFelice, Brian C; Pedersen, Theresa L; Shorrosh, Hanan; Johnson, Randi K; Seifert, Jennifer A; ... U2CES030158 J Steroid Biochem Mol Biol (2020 03) 31715316 Exiting the NIEHS site 2020 
A Comprehensive Plasma Metabolomics Dataset for a Cohort of Mouse Knockouts within the International ...   Barupal, Dinesh K; Zhang, Ying; Shen, Tong; Fan, Sili; Roberts, Bryan S; Fitzgerald, Patrick; ... U2CES030158 Metabolites (2019 May 22) 31121816 Exiting the NIEHS site 2019 
A Protocol to Compare Methods for Untargeted Metabolomics.   Wang, Lingjue; Naser, Fuad J; Spalding, Jonathan L; Patti, Gary J R35ES028365 Methods Mol Biol (2019) 30315456 Exiting the NIEHS site 2019 
Arginine and Carnitine Metabolites Are Altered in Diabetic Retinopathy.   Sumarriva, Katherine; Uppal, Karan; Ma, Chunyu; Herren, David J; Wang, Yating; Chocron, Isaac ... P30ES019776, U2CES030163 Invest Ophthalmol Vis Sci (2019 07 01) 31323682 Exiting the NIEHS site 2019 
Challenges in Identifying the Dark Molecules of Life.   Monge, María Eugenia; Dodds, James N; Baker, Erin S; Edison, Arthur S; Fernández, Facundo M P42ES027704, U2CES030167 Annu Rev Anal Chem (Palo Alto Calif) (2019 06 12) 30883183 Exiting the NIEHS site 2019 
Correlations Between LC-MS/MS-Detected Glycomics and NMR-Detected Metabolomics in Caenorhabditis ele ...   Sheikh, M Osman; Tayyari, Fariba; Zhang, Sicong; Judge, Michael T; Weatherly, D Brent; Ponce, ... U2CES030167 Front Mol Biosci (2019) 31316996 Exiting the NIEHS site 2019 
Evaluation of In Silico Multifeature Libraries for Providing Evidence for the Presence of Small Mole ...   Nuñez, Jamie R; Colby, Sean M; Thomas, Dennis G; Tfaily, Malak M; Tolic, Nikola; Ulrich, Elin ... U2CES030170 J Chem Inf Model (2019 09 23) 31430141 Exiting the NIEHS site 2019 
Exogenous Monounsaturated Fatty Acids Promote a Ferroptosis-Resistant Cell State.   Magtanong, Leslie; Ko, Pin-Joe; To, Milton; Cao, Jennifer Yinuo; Forcina, Giovanni C; Tarangelo ... R35ES028365 Cell Chem Biol (2019 03 21) 30686757 Exiting the NIEHS site 2019 
Hepatic monoacylglycerol acyltransferase 1 is induced by prolonged food deprivation to modulate the ...   Lutkewitte, Andrew J; McCommis, Kyle S; Schweitzer, George G; Chambers, Kari T; Graham, Mark J; ... R35ES028365 J Lipid Res (2019 03) 30610082 Exiting the NIEHS site 2019 
Hepatocyte-Macrophage Acetoacetate Shuttle Protects against Tissue Fibrosis.   Puchalska, Patrycja; Martin, Shannon E; Huang, Xiaojing; Lengfeld, Justin E; Daniel, Bence; Gra ... R35ES028365 Cell Metab (2019 02 05) 30449686 Exiting the NIEHS site 2019 
International Ring Trial of a High Resolution Targeted Metabolomics and Lipidomics Platform for Seru ...   Thompson, J Will; Adams, Kendra J; Adamski, Jerzy; Asad, Yasmin; Borts, David; Bowden, John A; ... R35ES028365, U2CES030167 Anal Chem (2019 11 19) 31638379 Exiting the NIEHS site 2019 
ISiCLE: A Quantum Chemistry Pipeline for Establishing in Silico Collision Cross Section Libraries.   Colby, Sean M; Thomas, Dennis G; Nuñez, Jamie R; Baxter, Douglas J; Glaesemann, Kurt R; Brown, ... U2CES030170 Anal Chem (2019 04 02) 30741529 Exiting the NIEHS site 2019 
Metabolome Wide Association Study of Serum Poly and Perfluoroalkyl Substances (PFASs) in Pregnancy a ...   Hu, Xin; Li, Shuzhao; Cirillo, Piera M; Krigbaum, Nickilou Y; Tran, ViLinh; Jones, Dean P; Coh ... P30ES019776, U2CES030163 Reprod Toxicol (2019 08) 31121237 Exiting the NIEHS site 2019 
Metabolomics Analyses of 14 Classical Neurotransmitters by GC-TOF with LC-MS Illustrates Secretion o ...   Hook, Vivian; Kind, Tobias; Podvin, Sonia; Palazoglu, Mine; Tran, Carol; Toneff, Thomas; Samra ... U2CES030158 ACS Chem Neurosci (2019 03 20) 30698015 Exiting the NIEHS site 2019 
Mitochondrial fusion supports increased oxidative phosphorylation during cell proliferation.   Yao, Cong-Hui; Wang, Rencheng; Wang, Yahui; Kung, Che-Pei; Weber, Jason D; Patti, Gary J R35ES028365 Elife (2019 01 29) 30694178 Exiting the NIEHS site 2019 
New mass spectrometry technologies contributing towards comprehensive and high throughput omics anal ...   Couvillion, Sneha P; Zhu, Ying; Nagy, Gabe; Adkins, Joshua N; Ansong, Charles; Renslow, Ryan S ... U2CES030170 Analyst (2019 Jan 28) 30507980 Exiting the NIEHS site 2019 
Ontology-based metabolomics data integration with quality control.   Buendia, Patricia; Bradley, Ray M; Taylor, Thomas J; Schymanski, Emma L; Patti, Gary J; Kabuka, ... R35ES028365 Bioanalysis (2019 Jun) 31179719 Exiting the NIEHS site 2019 
Perspectives on Data Analysis in Metabolomics: Points of Agreement and Disagreement from the 2018 AS ...   Baker, Erin S; Patti, Gary J R35ES028365 J Am Soc Mass Spectrom (2019 Oct) 31440979 Exiting the NIEHS site 2019 
Phytochelatin database: a resource for phytochelatin complexes of nutritional and environmental meta ...   Dennis, Kristine K; Uppal, Karan; Liu, Ken H; Ma, Chunyu; Liang, Bill; Go, Young-Mi; Jones, D ... P30ES019776, R01ES023485, U2CES030163 Database (Oxford) (2019 01 01) 31267134 Exiting the NIEHS site 2019 
Primed mesenchymal stem cells package exosomes with metabolites associated with immunomodulation.   Showalter, Megan R; Wancewicz, Benjamin; Fiehn, Oliver; Archard, Joehleen A; Clayton, Shannon; ... U2CES030158 Biochem Biophys Res Commun (2019 05 14) 30926165 Exiting the NIEHS site 2019 
Rapid LC-MS/MS quantification of cancer related acetylated polyamines in human biofluids.   DeFelice, Brian C; Fiehn, Oliver U2CES030158 Talanta (2019 May 01) 30683386 Exiting the NIEHS site 2019 
Serum and urinary metabolomics and outcomes in cirrhosis.   Bajaj, Jasmohan S; Fan, Sili; Thacker, Leroy R; Fagan, Andrew; Gavis, Edith; White, Melanie B; ... U2CES030158 PLoS One (2019) 31560724 Exiting the NIEHS site 2019 
Sets of coregulated serum lipids are associated with Alzheimer's disease pathophysiology.   Barupal, Dinesh Kumar; Baillie, Rebecca; Fan, Sili; Saykin, Andrew J; Meikle, Peter J; Arnold, ... U2CES030158 Alzheimers Dement (Amst) (2019 Dec) 31517024 Exiting the NIEHS site 2019 
SLIM Ultrahigh Resolution Ion Mobility Spectrometry Separations of Isotopologues and Isotopomers Rev ...   Wojcik, Roza; Nagy, Gabe; Attah, Isaac K; Webb, Ian K; Garimella, Sandilya V B; Weitz, Karl K; ... U2CES030170 Anal Chem (2019 09 17) 31450886 Exiting the NIEHS site 2019 
Structure Annotation of All Mass Spectra in Untargeted Metabolomics.   Blaženović, Ivana; Kind, Tobias; Sa, Michael R; Ji, Jian; Vaniya, Arpana; Wancewicz, Benjamin; ... U2CES030158 Anal Chem (2019 02 05) 30608141 Exiting the NIEHS site 2019 
Systems-level analysis of isotopic labeling in untargeted metabolomic data by X13CMS.   Llufrio, Elizabeth M; Cho, Kevin; Patti, Gary J R35ES028365 Nat Protoc (2019 07) 31168088 Exiting the NIEHS site 2019 
The metabolome: A key measure for exposome research in epidemiology.   Walker, Douglas I; Valvi, Damaskini; Rothman, Nathaniel; Lan, Qing; Miller, Gary W; Jones, Dea ... P30ES019776, P30ES023515, R21ES028903, R21ES028903, R21ES029328, R21ES029328, U2CES026561, U2CES030163 Curr Epidemiol Rep (2019) 31828002 Exiting the NIEHS site 2019 
Untargeted Metabolomics Differentiates l-Carnitine Treated Septic Shock 1-Year Survivors and Nonsurv ...   Evans, Charles R; Karnovsky, Alla; Puskarich, Michael A; Michailidis, George; Jones, Alan E; St ... U2CES026553, U2CES030164 J Proteome Res (2019 05 03) 30895797 Exiting the NIEHS site 2019 
Consumption of NADPH for 2-HG Synthesis Increases Pentose Phosphate Pathway Flux and Sensitizes Cell ...   Gelman, Susan J; Naser, Fuad; Mahieu, Nathaniel G; McKenzie, Lisa D; Dunn, Gavin P; Chheda, Mi ... R35ES028365 Cell Rep (2018 01 09) 29320744 Exiting the NIEHS site 2018 
Distinctive Patterns of Flavonoid Biosynthesis in Roots and Nodules of Datisca glomerata and Medicag ...   Gifford, Isaac; Battenberg, Kai; Vaniya, Arpana; Wilson, Alex; Tian, Li; Fiehn, Oliver; Berry, ... U2CES030158 Front Plant Sci (2018) 30364174 Exiting the NIEHS site 2018 
Diversity of Neuropeptide Cell-Cell Signaling Molecules Generated by Proteolytic Processing Revealed ...   Hook, Vivian; Lietz, Christopher B; Podvin, Sonia; Cajka, Tomas; Fiehn, Oliver U2CES030158 J Am Soc Mass Spectrom (2018 05) 29667161 Exiting the NIEHS site 2018 
Identifying off-target effects of etomoxir reveals that carnitine palmitoyltransferase I is essentia ...   Yao, Cong-Hui; Liu, Gao-Yuan; Wang, Rencheng; Moon, Sung Ho; Gross, Richard W; Patti, Gary J R35ES028365 PLoS Biol (2018 03) 29596410 Exiting the NIEHS site 2018 
Integrating bioinformatics approaches for a comprehensive interpretation of metabolomics datasets.   Barupal, Dinesh Kumar; Fan, Sili; Fiehn, Oliver U2CES030158 Curr Opin Biotechnol (2018 12) 29413745 Exiting the NIEHS site 2018 
Isotope Tracing Untargeted Metabolomics Reveals Macrophage Polarization-State-Specific Metabolic Coo ...   Puchalska, Patrycja; Huang, Xiaojing; Martin, Shannon E; Han, Xianlin; Patti, Gary J; Crawford, ... R35ES028365 iScience (2018 Nov 30) 30448730 Exiting the NIEHS site 2018 
Mechanism of High-Level Daptomycin Resistance in Corynebacterium striatum.   Goldner, Nicholas K; Bulow, Christopher; Cho, Kevin; Wallace, Meghan; Hsu, Fong-Fu; Patti, Gar ... R35ES028365 mSphere (2018 08 08) 30089649 Exiting the NIEHS site 2018 
Metabolic and Transcriptional Modules Independently Diversify Plasma Cell Lifespan and Function.   Lam, Wing Y; Jash, Arijita; Yao, Cong-Hui; D'Souza, Lucas; Wong, Rachel; Nunley, Ryan M; Meare ... R35ES028365 Cell Rep (2018 08 28) 30157439 Exiting the NIEHS site 2018 
Sorting cells alters their redox state and cellular metabolome.   Llufrio, Elizabeth M; Wang, Lingjue; Naser, Fuad J; Patti, Gary J R35ES028365 Redox Biol (2018 06) 29627745 Exiting the NIEHS site 2018 
Trace Phosphate Improves ZIC-pHILIC Peak Shape, Sensitivity, and Coverage for Untargeted Metabolomic ...   Spalding, Jonathan L; Naser, Fuad J; Mahieu, Nathaniel G; Johnson, Stephen L; Patti, Gary J R35ES028365 J Proteome Res (2018 10 05) 30160483 Exiting the NIEHS site 2018 
Transport-exclusion pharmacology to localize lactate dehydrogenase activity within cells.   Niu, Xiangfeng; Chen, Ying-Jr; Crawford, Peter A; Patti, Gary J R35ES028365 Cancer Metab (2018) 30559963 Exiting the NIEHS site 2018 
Two complementary reversed-phase separations for comprehensive coverage of the semipolar and nonpola ...   Naser, Fuad J; Mahieu, Nathaniel G; Wang, Lingjue; Spalding, Jonathan L; Johnson, Stephen L; Pa ... R35ES028365 Anal Bioanal Chem (2018 Feb) 29256075 Exiting the NIEHS site 2018 
Environmental Tobacco Smoke Alters Metabolic Systems in Adult Rats.   Barupal, Dinesh K; Pinkerton, Kent E; Hood, Carol; Kind, Tobias; Fiehn, Oliver U2CES030158 Chem Res Toxicol (2016 11 21) 27788581 Exiting the NIEHS site 2016 
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