| Project Title: | DNA PROTEIN CROSS-LINKS:CELLULAR EFFECTS AND REPAIR MECHANISMS |
|---|---|
| PI: | Tretyakova, Natalia Y |
| Institution: | University Of Minnesota |
| Grant Number: | R01ES023350 |
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| Publication Title | Authors | Grant Number(s) | Journal (Pub date) | PubMed Link | Pub Year |
|---|---|---|---|---|---|
| Effective density of inhaled environmental and engineered nanoparticles and its impact on the lung d ... | Lizonova, Denisa; Nagarkar, Amogh; Demokritou, Philip; Kelesidis, Georgios A | P30ES005022, R01ES023350 | Part Fibre Toxicol (2024 Feb 17) |
38368385
|
2024 |
| Endogenous Cellular Metabolite Methylglyoxal Induces DNA-Protein Cross-Links in Living Cells. | Hurben, Alexander K; Zhang, Qi; Galligan, James J; Tretyakova, Natalia; Erber, Luke | P30ES006694, R01ES023350 | ACS Chem Biol (2024 Jun 21) |
38752800
|
2024 |
| Enzymatic Processing of DNA-Protein Crosslinks. | Essawy, Maram M; Campbell, Colin | R01ES023350 | Genes (Basel) (2024 Jan 10) |
38254974
|
2024 |
| Incorporation of inosine into DNA by human polymerase eta (Polη): kinetics of nucleotide misincorpor ... | Zhang, Qi; Tretyakova, Natalia | R01ES023350 | Biochem J (2023 Sep 27) |
37746864
|
2023 |
| Investigation into Propolis Components Responsible for Inducing Skin Allergy: Air Oxidation of Caffe ... | Ndreu, Lorena; Hurben, Alexander K; Nyman, Gunnar S A; Tretyakova, Natalia Y; Karlsson, Isabell ... | R01ES023350 | Chem Res Toxicol (2023 Jun 19) |
37184291
|
2023 |
| Ubiquitin signaling and the proteasome drive human DNA-protein crosslink repair. | Essawy, Maram; Chesner, Lisa; Alshareef, Duha; Ji, Shaofei; Tretyakova, Natalia; Campbell, Col ... | R01ES023350 | Nucleic Acids Res (2023 Dec 11) |
37843153
|
2023 |
| Establishing Linkages Among DNA Damage, Mutagenesis, and Genetic Diseases. | Basu, Ashis K; Essigmann, John M | P42ES027707, R01ES023350 | Chem Res Toxicol (2022 Oct 17) |
35881568
|
2022 |
| Photocaged dicarbonyl probe provides spatiotemporal control over protein glycation. | Hurben, Alexander K; Ge, Peng; Bouchard, Jacob L; Doran, Todd M; Tretyakova, Natalia Y | R01ES023350 | Chem Commun (Camb) (2022 Jan 18) |
34935009
|
2022 |
| Role of Protein Damage Inflicted by Dopamine Metabolites in Parkinson's Disease: Evidence, Tools, an ... | Hurben, Alexander K; Tretyakova, Natalia Y | R01ES023350 | Chem Res Toxicol (2022 Oct 17) |
35994383
|
2022 |
| DNA-protein crosslinks are repaired via homologous recombination in mammalian mitochondria. | Chesner, Lisa N; Essawy, Maram; Warner, Cecilia; Campbell, Colin | R01ES023350 | DNA Repair (Amst) (2021 01) |
33316746
|
2021 |
| Proteome-Wide Profiling of Cellular Targets Modified by Dopamine Metabolites Using a Bio-Orthogonall ... | Hurben, Alexander K; Erber, Luke N; Tretyakova, Natalia Y; Doran, Todd M | R01ES023350, R01ES029911 | ACS Chem Biol (2021 Nov 19) |
34726906
|
2021 |
| Site-Specific 5-Formyl Cytosine Mediated DNA-Histone Cross-Links: Synthesis and Polymerase Bypass by ... | Pujari, Suresh S; Wu, Mingxuan; Thomforde, Jenna; Wang, Zhipeng A; Chao, Christopher; Olson, N ... | R01ES023350 | Angew Chem Int Ed Engl (2021 Dec 13) |
34634172
|
2021 |
| Synthesis and polymerase bypass studies of DNA-peptide and DNA-protein conjugates. | Pujari, Suresh S; Tretyakova, Natalia | R01ES023350 | Methods Enzymol (2021) |
34776221
|
2021 |
| Translesion Synthesis Past 5-Formylcytosine-Mediated DNA-Peptide Cross-Links by hPolη Is Dependent o ... | Thomforde, Jenna; Fu, Iwen; Rodriguez, Freddys; Pujari, Suresh S; Broyde, Suse; Tretyakova, Na ... | R01ES023350, R01ES025987 | Biochemistry (2021 06 15) |
34080848
|
2021 |
| Cross-linking of the DNA repair protein O6-alkylguanine DNA alkyltransferase to DNA in the presence ... | Ming, Xun; Michaelson-Richie, Erin D; Groehler 4th, Arnold S; Villalta, Peter W; Campbell, Coli ... | R01ES023350 | DNA Repair (Amst) (2020 05) |
32283495
|
2020 |
| Translesion synthesis of 6-nitrochrysene-derived 2'-deoxyadenosine adduct in human cells. | Powell, Brent V; Bacurio, Jan Henric T; Basu, Ashis K | R01ES023350 | DNA Repair (Amst) (2020 11) |
32721818
|
2020 |
| 5-Formylcytosine-induced DNA-peptide cross-links reduce transcription efficiency, but do not cause t ... | Ji, Shaofei; Park, Daeyoon; Kropachev, Konstantin; Kolbanovskiy, Marina; Fu, Iwen; Broyde, Sus ... | R01ES023350, R01ES025987 | J Biol Chem (2019 11 29) |
31597704
|
2019 |
| Error-prone replication of a 5-formylcytosine-mediated DNA-peptide cross-link in human cells. | Naldiga, Spandana; Ji, Shaofei; Thomforde, Jenna; Nicolae, Claudia M; Lee, Marietta; Zhang, Zh ... | R01ES023350, R01ES026184 | J Biol Chem (2019 07 05) |
31138652
|
2019 |
| Transcriptional Bypass of DNA-Protein and DNA-Peptide Conjugates by T7 RNA Polymerase. | Ji, Shaofei; Thomforde, Jenna; Rogers, Colette; Fu, Iwen; Broyde, Suse; Tretyakova, Natalia Y | R01ES023350, R01ES025987 | ACS Chem Biol (2019 12 20) |
31573793
|
2019 |
| 5-Formylcytosine mediated DNA-protein cross-links block DNA replication and induce mutations in huma ... | Ji, Shaofei; Fu, Iwen; Naldiga, Spandana; Shao, Hongzhao; Basu, Ashis K; Broyde, Suse; Tretyak ... | R01ES023350, R01ES025987 | Nucleic Acids Res (2018 07 27) |
29905846
|
2018 |
| A quantitative PCR-based assay reveals that nucleotide excision repair plays a predominant role in t ... | Chesner, Lisa N; Campbell, Colin | R01ES023350 | DNA Repair (Amst) (2018 Feb) |
29413806
|
2018 |
| A Simple, Rapid, and Quantitative Assay to Measure Repair of DNA-protein Crosslinks on Plasmids Tran ... | Chesner, Lisa N; Campbell, Colin | R01ES023350 | J Vis Exp (2018 Mar 05) |
29553515
|
2018 |
| DNA Damage, Mutagenesis and Cancer. | Basu, Ashis K | R01ES023350 | Int J Mol Sci (2018 Mar 23) |
29570697
|
2018 |
| Histone tails decrease N7-methyl-2'-deoxyguanosine depurination and yield DNA-protein cross-links in ... | Yang, Kun; Park, Daeyoon; Tretyakova, Natalia Y; Greenberg, Marc M | R01ES023350 | Proc Natl Acad Sci U S A (2018 11 27) |
30429328
|
2018 |
| Oxidative cross-linking of proteins to DNA following ischemia-reperfusion injury. | Groehler 4th, Arnold; Kren, Stefan; Li, Qinglu; Robledo-Villafane, Maggie; Schmidt, Joshua; Gar ... | R01ES023350 | Free Radic Biol Med (2018 May 20) |
29540307
|
2018 |
| Site-specific cross-linking of proteins to DNA via a new bioorthogonal approach employing oxime liga ... | Pujari, Suresh S; Zhang, Yi; Ji, Shaofei; Distefano, Mark D; Tretyakova, Natalia Y | R01ES023350 | Chem Commun (Camb) (2018 Jun 14) |
29851420
|
2018 |
| Cellular Repair of DNA-DNA Cross-Links Induced by 1,2,3,4-Diepoxybutane. | Chesner, Lisa N; Degner, Amanda; Sangaraju, Dewakar; Yomtoubian, Shira; Wickramaratne, Susith; ... | R01ES023350 | Int J Mol Sci (2017 May 18) |
28524082
|
2017 |
| Chemical Biology of N5-Substituted Formamidopyrimidine DNA Adducts. | Pujari, Suresh S; Tretyakova, Natalia | R01ES023350 | Chem Res Toxicol (2017 Jan 17) |
27959490
|
2017 |
| Controlling the Graphene-Bio Interface: Dispersions in Animal Sera for Enhanced Stability and Reduce ... | Pattammattel, Ajith; Pande, Paritosh; Kuttappan, Deepa; Puglia, Megan; Basu, Ashis K; Amalaradj ... | R01ES023350 | Langmuir (2017 Dec 12) |
29144756
|
2017 |
| Mass Spectrometry Based Proteomics Study of Cisplatin-Induced DNA-Protein Cross-Linking in Human Fib ... | Ming, Xun; Groehler 4th, Arnold; Michaelson-Richie, Erin D; Villalta, Peter W; Campbell, Colin; ... | R01ES023350 | Chem Res Toxicol (2017 Apr 17) |
28282121
|
2017 |
| Mass Spectrometry-Based Tools to Characterize DNA-Protein Cross-Linking by Bis-Electrophiles. | Groehler 4th, Arnold; Degner, Amanda; Tretyakova, Natalia Y | R01ES023350 | Basic Clin Pharmacol Toxicol (2017 Sep) |
28032943
|
2017 |
| Mutagenicity of a Model DNA-Peptide Cross-Link in Human Cells: Roles of Translesion Synthesis DNA Po ... | Pande, Paritosh; Ji, Shaofei; Mukherjee, Shivam; Schärer, Orlando D; Tretyakova, Natalia Y; Bas ... | R01ES023350 | Chem Res Toxicol (2017 Feb 20) |
27951635
|
2017 |
| Nanoarmoring: strategies for preparation of multi-catalytic enzyme polymer conjugates and enhancemen ... | Zore, Omkar V; Pande, Paritosh; Okifo, Oghenenyerovwo; Basu, Ashis K; Kasi, Rajeswari M; Kumar, ... | R01ES023350 | RSC Adv (2017) |
29403641
|
2017 |
| Reversible DNA-Protein Cross-Linking at Epigenetic DNA Marks. | Ji, Shaofei; Shao, Hongzhao; Han, Qiyuan; Seiler, Christopher L; Tretyakova, Natalia Y | R01ES023350 | Angew Chem Int Ed Engl (2017 Nov 06) |
28898504
|
2017 |
| Translesion Synthesis of 2'-Deoxyguanosine Lesions by Eukaryotic DNA Polymerases. | Basu, Ashis K; Pande, Paritosh; Bose, Arindam | R01ES023350 | Chem Res Toxicol (2017 Jan 17) |
27760288
|
2017 |
| Ultrathin Graphene-Protein Supercapacitors for Miniaturized Bioelectronics. | Mosa, Islam M; Pattammattel, Ajith; Kadimisetty, Karteek; Pande, Paritosh; El-Kady, Maher F; Bi ... | R01ES023350 | Adv Energy Mater (2017 Sep 06) |
29104523
|
2017 |
| Bypass of DNA-Protein Cross-links Conjugated to the 7-Deazaguanine Position of DNA by Translesion Sy ... | Wickramaratne, Susith; Ji, Shaofei; Mukherjee, Shivam; Su, Yan; Pence, Matthew G; Lior-Hoffmann ... | R01ES023350, R01ES025987 | J Biol Chem (2016 Nov 04) |
27621316
|
2016 |
| Comparative Error-Free and Error-Prone Translesion Synthesis of N(2)-2'-Deoxyguanosine Adducts Forme ... | Bose, Arindam; Surugihalli, Chaitra; Pande, Paritosh; Champeil, Elise; Basu, Ashis K | R01ES023350 | Chem Res Toxicol (2016 May 16) |
27082015
|
2016 |
| Covalent DNA-Protein Cross-Linking by Phosphoramide Mustard and Nornitrogen Mustard in Human Cells. | Groehler 4th, Arnold; Villalta, Peter W; Campbell, Colin; Tretyakova, Natalia | R01ES023350 | Chem Res Toxicol (2016 Feb 15) |
26692166
|
2016 |
| DNA-Protein Cross-Links: Formation, Structural Identities, and Biological Outcomes. | Tretyakova, Natalia Y; Groehler 4th, Arnold; Ji, Shaofei | R01ES023350 | Acc Chem Res (2015 Jun 16) |
26032357
|
2015 |
| Error-prone translesion synthesis past DNA-peptide cross-links conjugated to the major groove of DNA ... | Wickramaratne, Susith; Boldry, Emily J; Buehler, Charles; Wang, Yen-Chih; Distefano, Mark D; Tr ... | R01ES023350 | J Biol Chem (2015 Jan 09) |
25391658
|
2015 |
| Synthesis of DNA Oligodeoxynucleotides Containing Site-Specific 1,3-Butadiene-Deoxyadenosine Lesions ... | Wickramaratne, Susith; Seiler, Christopher L; Tretyakova, Natalia Y | R01ES023350 | Curr Protoc Nucleic Acid Chem (2015 Jun 03) |
26344227
|
2015 |
| Replicative bypass of abasic site in Escherichia coli and human cells: similarities and differences. | Weerasooriya, Savithri; Jasti, Vijay P; Basu, Ashis K | R01ES023350 | PLoS One (2014) |
25226389
|
2014 |