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Who We Fund: Publications associated with Organ Systems Or Disease Processes Research - Microbiome

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Publication Title Authors Grant Number(s) Journal (Pub date) PubMed Link Pub Year
Akkermansia muciniphila modifies the association between metal exposure during pregnancy and depress ...   Midya, Vishal; Nagdeo, Kiran; Lane, Jamil; Torres-Olascoaga, Libni; Martínez, Gabriela; Horton, ... P30ES023515, R00ES032884, R01ES013744, R35ES030435, U2CES026555 Res Sq (2024 Feb 14) 38410473 Exiting the NIEHS site 2024 
Ambient Particulate Matter Induces In Vitro Toxicity to Intestinal Epithelial Cells without Exacerba ...   Chang, Candace; Louie, Allen; Zhou, Yi; Gupta, Rajat; Liang, Fengting; Xanthou, Georgina; Eres ... R01ES029395, R01ES032806, R01ES033703, T32ES015457 Int J Mol Sci (2024 Jun 29) 39000289 Exiting the NIEHS site 2024 
An in vitro medium for modeling gut dysbiosis associated with cystic fibrosis.   Barrack, Kaitlyn E; Hampton, Thomas H; Valls, Rebecca A; Surve, Sarvesh V; Gardner, Timothy B; ... R01ES033988 J Bacteriol (2024 Jan 25) 38169295 Exiting the NIEHS site 2024 
Association between Mediterranean diet and metal mixtures concentrations in pregnant people from the ...   Notario-Barandiaran, L; Signes-Pastor, A J; Laue, H E; Abuawad, A; Jackson, B P; Madan, J C; K ... K99ES034086 Sci Total Environ (2024 Feb 20) 38070554 Exiting the NIEHS site 2024 
Bile salt hydrolase catalyses formation of amine-conjugated bile acids.   Rimal, Bipin; Collins, Stephanie L; Tanes, Ceylan E; Rocha, Edson R; Granda, Megan A; Solanki, ... R35ES035027 Nature (2024 Feb) 38326609 Exiting the NIEHS site 2024 
Circulating Extracellular Vesicles as a Potential Mediator of Synuclein Pathology in the Gut.   Sampson, Timothy R R01ES032440 Mov Disord (2024 Jan) 38294044 Exiting the NIEHS site 2024 
Conceptualizing the Role of the Microbiome as a Mediator and Modifier in Environmental Health Studie ...   Laue, Hannah E; Gilmour, Aislinn J; Tirado, Valerie M; Romano, Megan E K99ES034086 Curr Environ Health Rep (2024 Mar) 38217674 Exiting the NIEHS site 2024 
Development and performance evaluation of online monitors for near real-time measurement of total an ...   Aghaei, Yashar; Aldekheel, Mohammad; Tohidi, Ramin; Badami, Mohammad Mahdi; Farahani, Vahid Jal ... R01ES029395, R01ES032806 Atmos Environ (1994) (2024 Feb 15) 38250566 Exiting the NIEHS site 2024 
Diet-microbiome interactions promote enteric nervous system resilience following spinal cord injury.   Hamilton, Adam M; Blackmer-Raynolds, Lisa; Li, Yaqing; Kelly, Sean; Kebede, Nardos; Williams, ... R01ES032440 bioRxiv (2024 Jun 08) 38895207 Exiting the NIEHS site 2024 
Effects of Paraquat, Dextran Sulfate Sodium, and Irradiation on Behavioral and Cognitive Performance ...   Chaklai, Ariel; O'Neil, Abigail; Goel, Shrey; Margolies, Nick; Krenik, Destine; Perez, Ruby; K ... R01ES030226 Genes (Basel) (2024 Feb 23) 38540341 Exiting the NIEHS site 2024 
Genetic and microbial determinants of azoxymethane-induced colorectal tumor susceptibility in Collab ...   Li, Dan; Zhong, Chenhan; Yang, Mengyuan; He, Li; Chang, Hang; Zhu, Ning; Celniker, Susan E; T ... R01ES031322 Gut Microbes (2024) 38659246 Exiting the NIEHS site 2024 
Immune cell-intrinsic Ah receptor facilitates the expression of antimicrobial REG3G in the small int ...   Chakraborty, Debopriya; Coslo, Denise M; Murray, Iain A; Vijay, Anitha; Patterson, Andrew D; Pe ... R35ES028244, R35ES035027 FASEB J (2024 Feb 29) 38358358 Exiting the NIEHS site 2024 
Limitations of BMI z scores for assessing weight change: A clinical tool versus individual risk.   Adise, Shana; Rhee, Kyung E; Laurent, Jennifer; Holzhausen, Elizabeth A; Hayati Rezvan, Panteha ... R01ES035035 Obesity (Silver Spring) (2024 Mar) 38192094 Exiting the NIEHS site 2024 
Los Angeles Basin's air quality transformation: a long-term investigation on the impacts of PM regul ...   Badami, Mohammad Mahdi; Tohidi, Ramin; Sioutas, Constantinos R01ES029395, R01ES032806 J Aerosol Sci (2024 Feb) 38223364 Exiting the NIEHS site 2024 
Major alteration of Lung Microbiome and the Host Reaction in critically ill COVID-19 Patients with h ...   Bustos, Ingrid G; Wiscovitch-Russo, Rosana; Singh, Harinder; Sievers, Benjamín L; Matsuoka, Mic ... R01ES030227 Res Sq (2024 Mar 08) 38496464 Exiting the NIEHS site 2024 
Patterns of infant fecal metabolite concentrations and social behavioral development in toddlers.   Laue, Hannah E; Bauer, Julia A; Pathmasiri, Wimal; Sumner, Susan C J; McRitchie, Susan; Palys, ... K99ES034086 Pediatr Res (2024 Jul) 38509226 Exiting the NIEHS site 2024 
Phosphorothioate DNA modification by BREX Type 4 systems in the human gut microbiome.   Yuan, Yifeng; DeMott, Michael S; Byrne, Shane R; Flores, Katia; Poyet, Mathilde; Groussin, Mat ... R01ES031576, T32ES007020 bioRxiv (2024 Jun 03) 38895356 Exiting the NIEHS site 2024 
Prenatal metal exposures and childhood gut microbial signatures are associated with depression score ...   Midya, Vishal; Nagdeo, Kiran; Lane, Jamil M; Torres-Olascoaga, Libni A; Torres-Calapiz, Mariana ... P30ES023515, R00ES032884, R01ES013744, R35ES030435, U2CES026555 Sci Total Environ (2024 Mar 15) 38278245 Exiting the NIEHS site 2024 
Prospective association of the infant gut microbiome with social behaviors in the ECHO consortium.   Laue, Hannah E; Bonham, Kevin S; Coker, Modupe O; Moroishi, Yuka; Pathmasiri, Wimal; McRitchie, ... K99ES034086 Mol Autism (2024 May 17) 38760865 Exiting the NIEHS site 2024 
Proteomic and Metabolomic Signatures of Diet Quality in Young Adults.   Costello, Elizabeth; Goodrich, Jesse A; Patterson, William B; Walker, Douglas I; Chen, Jiawen C ... P30ES007048, R01ES029944, R01ES029944, R01ES030364, R01ES030364, R01ES030364, R01ES030691, R01ES030691, R01ES035035, T32ES013678 Nutrients (2024 Jan 31) 38337712 Exiting the NIEHS site 2024 
PT-seq: A method for metagenomic analysis of phosphorothioate epigenetics in complex microbial commu ...   Yuan, Yifeng; DeMott, Michael S; Byrne, Shane R; Global Microbiome Conservancy; Dedon, Peter C R01ES031576, T32ES007020 bioRxiv (2024 Jun 03) 38895297 Exiting the NIEHS site 2024 
Review: myogenic and muscle toxicity targets of environmental methylmercury exposure.   Tam, Lok Ming; Rand, Matthew D P30ES001247, R01ES030940 Arch Toxicol (2024 Jun) 38546836 Exiting the NIEHS site 2024 
The zebrafish gut microbiome influences benzo[a]pyrene developmental neurobehavioral toxicity.   Stagaman, Keaton; Alexiev, Alexandra; Sieler, Michael J; Hammer, Austin; Kasschau, Kristin D; T ... P30ES030287, P42ES016465, R01ES030226, T32ES007060 Sci Rep (2024 Jun 25) 38918492 Exiting the NIEHS site 2024 
tRNA modification profiling reveals epitranscriptome regulatory networks in Pseudomonas aeruginosa.   Sun, Jingjing; Wu, Junzhou; Yuan, Yifeng; Fan, Leon; Chua, Wei Lin Patrina; Ling, Yan Han Shar ... R01ES031576 bioRxiv (2024 Jul 02) 39005467 Exiting the NIEHS site 2024 
Assessing Lifetime Cancer Risk Associated with Population Exposure to PM-Bound PAHs and Carcinogenic ...   Aldekheel, Mohammad; Farahani, Vahid Jalali; Sioutas, Constantinos R01ES029395 Toxics (2023 Aug 12) 37624202 Exiting the NIEHS site 2023 
Assessing the role of the gut microbiome in methylmercury demethylation and elimination in humans an ...   Coe, Genevieve L; Krout, Ian N; Munro-Ehrlich, Mason; Beamish, Catherine R; Vorojeikina, Daria; ... P30ES001247, R01ES030940, T32ES007026 Arch Toxicol (2023 Sep) 37392210 Exiting the NIEHS site 2023 
Assessment of aflatoxin exposure, growth faltering and the gut microbiome among children in rural Gu ...   Cheng, Qiwen; Glesener, Hannah; Montenegro, Gabriela; Torres, Olga; Miller, Ann C; Krajmalnik-B ... R01ES033999 BMJ Paediatr Open (2023 Apr) 37080609 Exiting the NIEHS site 2023 
Behavioral and Cognitive Performance Following Exposure to Second-Hand Smoke (SHS) from Tobacco Prod ...   Raber, Jacob; Stagaman, Keaton; Kasschau, Kristin D; Davenport, Conor; Lopes, Leilani; Nguyen, ... P30ES030287, R01ES030226 Genes (Basel) (2023 Aug 27) 37761842 Exiting the NIEHS site 2023 
Characterizing alterations in the gut microbiota following postpartum weight change.   Chalifour, Bridget N; Trifonova, Diana I; Holzhausen, Elizabeth A; Bailey, Maximilian J; Schmidt ... R01ES035035 mSystems (2023 Dec 21) 37905810 Exiting the NIEHS site 2023 
Common laboratory diets differentially influence zebrafish gut microbiome's successional development ...   Sieler, Michael; Al-Samarrie, Colleen; Kasschau, Kristin; Varga, Zoltan; Kent, Michael; Sharpto ... R01ES030226 Res Sq (2023 Feb 02) 36778316 Exiting the NIEHS site 2023 
Defining the environmental determinants of dysbiosis at scale with zebrafish.   Sharpton, Thomas J; Alexiev, Alexandra; Tanguay, Robyn L P30ES030287, R01ES030226, T32ES007060 Curr Opin Toxicol (2023 Dec) 38486798 Exiting the NIEHS site 2023 
Design, optimization, and evaluation of a wet electrostatic precipitator (ESP) for aerosol collectio ...   Badami, Mohammad Mahdi; Tohidi, Ramin; Aldekheel, Mohammad; Farahani, Vahid Jalali; Verma, Vish ... R01ES029395 Atmos Environ (1994) (2023 Sep 01) 37305446 Exiting the NIEHS site 2023 
Development and performance evaluation of a two-stage cascade impactor equipped with gelatin filter ...   Aldekheel, Mohammad; Farahani, Vahid Jalali; Tohidi, Ramin; Altuwayjiri, Abdulmalik; Sioutas, C ... R01ES029395, R01ES032806 Atmos Environ (1994) (2023 Feb 01) 36504702 Exiting the NIEHS site 2023 
Disentangling the link between zebrafish diet, gut microbiome succession, and Mycobacterium chelonae ...   Sieler Jr, Michael J; Al-Samarrie, Colleen E; Kasschau, Kristin D; Varga, Zoltan M; Kent, Micha ... R01ES030226 Anim Microbiome (2023 Aug 10) 37563644 Exiting the NIEHS site 2023 
Disposition and metabolomic effects of 2,2',5,5'-tetrachlorobiphenyl in female rats following intrap ...   Bullert, Amanda; Li, Xueshu; Chunyun, Zhang; Lee, Kendra; Pulliam, Casey F; Cagle, Brianna S; ... P30ES005605, P42ES013661, R01ES014901, R01ES031098 Environ Toxicol Pharmacol (2023 Sep) 37572994 Exiting the NIEHS site 2023 
Disposition and Metabolomic Effects of 2,2',5,5'-Tetrachlorobiphenyl in Female Rats Following Intrap ...   Bullert, Amanda; Li, Xueshu; Zhang, Chunyun; Lee, Kendra; Pulliam, Casey F; Cagle, Brianna S; ... P30ES005605, P42ES013661, R01ES014901, R01ES031098 bioRxiv (2023 Aug 09) 37609242 Exiting the NIEHS site 2023 
Effect of Husbandry Practices on the Fecal Microbiota of C57BL/6J Breeding Colonies Housed in 2 Diff ...   Roman, Libette J; Snijders, Antoine M; Chang, Hang; Mao, Jian-Hua; Jones, Kristina Ja; Lawson, ... R01ES031322 J Am Assoc Lab Anim Sci (2023 Jan 01) 36755206 Exiting the NIEHS site 2023 
Enantiomeric Fractions Reveal Differences in the Atropselective Disposition of 2,2',3,5',6-Pentachlo ...   Li, Xueshu; Bullert, Amanda J; Han, Weiguo; Yang, Weizhu; Zhang, Qing-Yu; Ding, Xinxin; Lehmle ... P30ES005605, P30ES006694, P42ES013661, R01ES014901, R01ES020867, R01ES031098 Chem Res Toxicol (2023 Aug 21) 37467352 Exiting the NIEHS site 2023 
Exposure to polychlorinated biphenyls selectively dysregulates endothelial circadian clock and endot ...   Teglas, Timea; Torices, Silvia; Taylor, Madison; Coker, Desiree; Toborek, Michal R01ES034691 J Hazard Mater (2023 Jul 15) 37126901 Exiting the NIEHS site 2023 
Extracellular vesicle treatment partially reverts epigenetic alterations in chronically ischemic por ...   Broadwin, Mark; Aghagoli, Ghazal; Sabe, Sharif A; Harris, Dwight D; Wallace, Joselynn; Lawson, ... R01ES030227 Vessel Plus (2023) 37982029 Exiting the NIEHS site 2023 
Fecal microbiota transplantation ameliorates type 2 diabetes via metabolic remodeling of the gut mic ...   Chen, Lijuan; Guo, Lin; Feng, Susu; Wang, Congcong; Cui, Zhicheng; Wang, Sijing; Lu, Qingmiao ... R01ES031322 BMJ Open Diabetes Res Care (2023 May) 37253485 Exiting the NIEHS site 2023 
Four additional natural 7-deazaguanine derivatives in phages and how to make them.   Cui, Liang; Balamkundu, Seetharamsing; Liu, Chuan-Fa; Ye, Hong; Hourihan, Jacob; Rausch, Astri ... R01ES031576 Nucleic Acids Res (2023 Sep 22) 37572349 Exiting the NIEHS site 2023 
Gastrointestinal Dysfunction in Neurological and Neurodegenerative Disorders.   Raber, Jacob; Sharpton, Thomas J R01ES030226 Semin Neurol (2023 Aug) 37607587 Exiting the NIEHS site 2023 
Identification of rare microbial colonizers of plastic materials incubated in a coral reef environme ...   Singleton, Sebastian L; Davis 2nd, Edward W; Arnold, Holly K; Daniels, An Mei Y; Brander, Susan ... R01ES030226 Front Microbiol (2023) 37869676 Exiting the NIEHS site 2023 
Induction of AHR Signaling in Response to the Indolimine Class of Microbial Stress Metabolites.   Patel, Dhwani; Murray, Iain A; Dong, Fangcong; Annalora, Andrew J; Gowda, Krishne; Coslo, Deni ... R35ES028244, R35ES035027 Metabolites (2023 Aug 31) 37755265 Exiting the NIEHS site 2023 
Integrating 4-D light-sheet fluorescence microscopy and genetic zebrafish system to investigate ambi ...   Gonzalez-Ramos, Sheila; Wang, Jing; Cho, Jae Min; Zhu, Enbo; Park, Seul-Ki; In, Julie G; Reddy ... R01ES014639, R01ES014639, R01ES029395, R01ES032037, R01ES033660 Sci Total Environ (2023 Dec 01) 37543337 Exiting the NIEHS site 2023 
Intra-Airway Treatment with Synthetic Lipoxin A4 and Resolvin E2 Mitigates Neonatal Asthma Triggered ...   Ramar, Mohankumar; Yano, Naohiro; Fedulov, Alexey V R01ES030227 Int J Mol Sci (2023 Mar 24) 37047118 Exiting the NIEHS site 2023 
Longitudinal Characterization of the Gut Microbiota in the Diabetic ZDSD Rat Model and Therapeutic P ...   Weninger, Savanna N; Ding, Angela; Browne, Elizabeth N; Frost, Morgan L; Schiro, Gabriele; Laub ... P30ES006694, R01ES033993 Metabolites (2023 May 16) 37233701 Exiting the NIEHS site 2023 
Maternal exposure to pesticides and autism or attention-deficit/hyperactivity disorders in offspring ...   Xu, Yifan; Yang, Xu; Chen, Danrong; Xu, Yadan; Lan, Linchen; Zhao, Shuangshuang; Liu, Qianqi; ... R01ES031322 Chemosphere (2023 Feb) 36470360 Exiting the NIEHS site 2023 
Maternal PBDE exposure disrupts gut microbiome and promotes hepatic proinflammatory signaling in hum ...   Kim, Sarah; Li, Hao; Jin, Yan; Armad, Jasmine; Gu, Haiwei; Mani, Sridhar; Cui, Julia Y P30ES007033, R01ES030197, R01ES031098 Toxicol Sci (2023 Jul 28) 37267213 Exiting the NIEHS site 2023 
Microbial amyloids in neurodegenerative amyloid diseases.   Sampson, Timothy R01ES032440 FEBS J (2023 Dec 02) 38041542 Exiting the NIEHS site 2023 
Microbial Metabolites as Ligands to Xenobiotic Receptors: Chemical Mimicry as Potential Drugs of the ...   Dvořák, Zdeněk; Li, Hao; Mani, Sridhar R01ES030197 Drug Metab Dispos (2023 Feb) 36184080 Exiting the NIEHS site 2023 
Microbiome remodeling through bacterial competition and host behavior enables rapid adaptation to en ...   Kim, Dan; Pérez-Carrascal, Olga Maria; DeSousa, Catherin; Jung, Da Kyung; Bohley, Seneca; Wijay ... R01ES034012 bioRxiv (2023 Jun 23) 37646003 Exiting the NIEHS site 2023 
Necroptosis Drives Major Adverse Cardiovascular Events During Severe COVID-19.   Wiscovitch-Russo, Rosana; Ibáñez-Prada, Elsa D; Serrano-Mayorga, Cristian C; Sievers, Benjamin L ... R01ES030227 Res Sq (2023 Jan 21) 36711834 Exiting the NIEHS site 2023 
Perspectives on the Drosophila melanogaster Model for Advances in Toxicological Science.   Rand, Matthew D; Tennessen, Jason M; Mackay, Trudy F C; Anholt, Robert R H P30ES001247, R01ES030940, T32ES007026 Curr Protoc (2023 Aug) 37639638 Exiting the NIEHS site 2023 
Population fraction of Parkinson's disease attributable to preventable risk factors.   Payami, Haydeh; Cohen, Gwendolyn; Murchison, Charles F; Sampson, Timothy R; Standaert, David G; ... R01ES032440 medRxiv (2023 May 19) 37292848 Exiting the NIEHS site 2023 
Population fraction of Parkinson's disease attributable to preventable risk factors.   Payami, Haydeh; Cohen, Gwendolyn; Murchison, Charles F; Sampson, Timothy R; Standaert, David G; ... R01ES032440 NPJ Parkinsons Dis (2023 Dec 05) 38052871 Exiting the NIEHS site 2023 
Prenatal Lead Exposure Is Associated with Reduced Abundance of Beneficial Gut Microbial Cliques in L ...   Midya, Vishal; Lane, Jamil M; Gennings, Chris; Torres-Olascoaga, Libni A; Gregory, Jill K; Wrig ... P30ES023515, R00ES032884, R01ES013744, R35ES030435 Environ Sci Technol (2023 Nov 07) 37878664 Exiting the NIEHS site 2023 
Prenatal lead exposure is negatively associated with the gut microbiome in childhood.   Eggers, Shoshannah; Midya, Vishal; Bixby, Moira; Gennings, Chris; Torres-Olascoaga, Libni A; Wa ... R00ES032884, R01ES013744 Front Microbiol (2023) 37426026 Exiting the NIEHS site 2023 
Rebuttal to Correspondence on "Machine Learning-Assisted Identification and Quantification of Hydrox ...   Zhang, Chun-Yun; Li, Xueshu; Keil Stietz, Kimberly P; Sethi, Sunjay; Yang, Weizhu; Marek, Rach ... P30ES005605, P30ES006694, P30ES023513, P42ES013661, R01ES014901, R01ES031098 Environ Sci Technol (2023 Apr 18) 37017328 Exiting the NIEHS site 2023 
Recent Review on Selected Xenobiotics and Their Impacts on Gut Microbiome and Metabolome.   Jin, Yan; Chi, Jinhua; LoMonaco, Kaelene; Boon, Alexandria; Gu, Haiwei R01ES030197 Trends Analyt Chem (2023 Sep) 37484879 Exiting the NIEHS site 2023 
RISING STARS: Endocrine regulation of metabolic homeostasis via the intestine and gut microbiome.   Meyer, Rachel K; Duca, Frank A P30ES006694, R01ES033993 J Endocrinol (2023 Aug 01) 37171833 Exiting the NIEHS site 2023 
SOX17 Deficiency Mediates Pulmonary Hypertension: At the Crossroads of Sex, Metabolism, and Genetics ...   Sangam, Shreya; Sun, Xutong; Schwantes-An, Tae-Hwi; Yegambaram, Manivannan; Lu, Qing; Shi, Yin ... R01ES030197 Am J Respir Crit Care Med (2023 Apr 15) 36913491 Exiting the NIEHS site 2023 
Stunting: methodological considerations for improved study design and reporting.   Rohloff, Peter; Flom, Peter R01ES033999 BMJ Paediatr Open (2023 May) 37164388 Exiting the NIEHS site 2023 
The effect of ambient ozone exposure on three types of diabetes: a meta-analysis.   Yu, Sirui; Zhang, Mingzhi; Zhu, Jiamin; Yang, Xu; Bigambo, Francis Manyori; Snijders, Antoine ... R01ES031322 Environ Health (2023 Mar 30) 36998068 Exiting the NIEHS site 2023 
The interconnection between obesity and executive function in adolescence: The role of the gut micro ...   Lane, Jamil M; Wright, Robert O; Eggers, Shoshannah R00ES032884, R01ES013744 Neurosci Biobehav Rev (2023 Oct) 37524139 Exiting the NIEHS site 2023 
The potential role of early life feeding patterns in shaping the infant fecal metabolome: implicatio ...   Chalifour, Bridget; Holzhausen, Elizabeth A; Lim, Joseph J; Yeo, Emily N; Shen, Natalie; Jones, ... R01ES035035 NPJ Metab Health Dis (2023) 38299034 Exiting the NIEHS site 2023 
A multiomics analysis of direct interkingdom dynamics between influenza A virus and Streptococcus pn ...   Platt, Maryann P; Lin, Yi-Han; Penix, Trevor; Wiscovitch-Russo, Rosana; Vashee, Isha; Mares, C ... R01ES030227 PLoS Pathog (2022 Dec) 36542660 Exiting the NIEHS site 2022 
An optimized approach for processing of frozen lung and lavage samples for microbiome studies.   Wiscovitch-Russo, Rosana; Singh, Harinder; Oldfield, Lauren M; Fedulov, Alexey V; Gonzalez-Juarb ... R01ES030227 PLoS One (2022) 35381030 Exiting the NIEHS site 2022 
Chemical mixture exposure patterns and obesity among U.S. adults in NHANES 2005-2012.   Zhang, Yuqing; Wang, Xu; Yang, Xu; Hu, Qi; Chawla, Kuldeep; Hang, Bo; Mao, Jian-Hua; Snijders ... R01ES031322 Ecotoxicol Environ Saf (2022 Dec 15) 36427371 Exiting the NIEHS site 2022 
Draft Genome Sequence of Plesiomonas shigelloides Strain zfcc0051 (Phylum Proteobacteria).   VanderHoek, Zoe K; Browning, Addison M; Washburn, Quinn; Kent, Micheal L; Sharpton, Thomas J; G ... R01ES030226 Microbiol Resour Announc (2022 Jul 21) 35639031 Exiting the NIEHS site 2022 
Effect of Chronic Cadmium Exposure on Brain and Liver Transporters and Drug-Metabolizing Enzymes in ...   Wang, Hao; Zhang, Liang; Xia, Zhengui; Cui, Julia Yue P30ES007033, R01ES030197, R01ES031098 Drug Metab Dispos (2022 Oct) 35878927 Exiting the NIEHS site 2022 
Emerging Insights into the Impact of Air Pollution on Immune-Mediated Asthma Pathogenesis.   Tuazon, J A; Kilburg-Basnyat, B; Oldfield, L M; Wiscovitch-Russo, R; Dunigan-Russell, K; Fedulo ... R01ES030227 Curr Allergy Asthma Rep (2022 Jul) 35394608 Exiting the NIEHS site 2022 
Engineering an incubation environment that mimics in situ conditions for in vitro coastal microbiome ...   Hunter, Brad T; Flury, Jaeden D; Cocioba, Sebastian S; Cope-Arguello, Matthew L; Helms, Jared M ... R15ES033027 Biotechniques (2022 Oct) 36189957 Exiting the NIEHS site 2022 
Experimental methods modestly impact interpretation of the effect of environmental exposures on the ...   Stagaman, Keaton; Kasschau, Kristin D; Tanguay, Robyn L; Sharpton, Thomas J P30ES030287, R01ES030226 Sci Rep (2022 Aug 25) 36008504 Exiting the NIEHS site 2022 
Fecal Implants From App NL-G-F and App NL-G-F/E4 Donor Mice Sufficient to Induce Behavioral Phenotyp ...   Kundu, Payel; Stagaman, Keaton; Kasschau, Kristin; Holden, Sarah; Shulzhenko, Natalia; Sharpton ... R01ES030226 Front Behav Neurosci (2022) 35210996 Exiting the NIEHS site 2022 
Gestational exposure to titanium dioxide, diesel exhaust, and concentrated urban air particles affec ...   Kumar, Mohan; Yano, Naohiro; Fedulov, Alexey V R01ES030227 J Toxicol Environ Health A (2022 Mar 19) 34802391 Exiting the NIEHS site 2022 
Gut and lung microbiome profiles in pregnant mice.   Wiscovitch-Russo, Rosana; Taal, Aji Mary; Kuelbs, Claire; Oldfield, Lauren M; Ramar, MohanKumar ... R01ES030227 Front Microbiol (2022) 36578567 Exiting the NIEHS site 2022 
Machine Learning-Assisted Identification and Quantification of Hydroxylated Metabolites of Polychlor ...   Zhang, Chun-Yun; Li, Xueshu; Keil Stietz, Kimberly P; Sethi, Sunjay; Yang, Weizhu; Marek, Rach ... P30ES005605, P30ES023513, P42ES013661, R01ES014901, R01ES031098 Environ Sci Technol (2022 Sep 20) 36047920 Exiting the NIEHS site 2022 
Metabolism of 3-Chlorobiphenyl (PCB 2) in a Human-Relevant Cell Line: Evidence of Dechlorinated Meta ...   Zhang, Chun-Yun; Li, Xueshu; Flor, Susanne; Ruiz, Patricia; Kruve, Anneli; Ludewig, Gabriele; ... P30ES005605, P42ES013661, R01ES014901, R01ES031098 Environ Sci Technol (2022 Sep 06) 35994059 Exiting the NIEHS site 2022 
Metagenomics of Parkinson's disease implicates the gut microbiome in multiple disease mechanisms.   Wallen, Zachary D; Demirkan, Ayse; Twa, Guy; Cohen, Gwendolyn; Dean, Marissa N; Standaert, Dav ... R01ES032440 Nat Commun (2022 Nov 15) 36376318 Exiting the NIEHS site 2022 
Organomercurial Lyase (MerB)-Mediated Demethylation Decreases Bacterial Methylmercury Resistance in ...   Krout, Ian N; Scrimale, Thomas; Vorojeikina, Daria; Boyd, Eric S; Rand, Matthew D P30ES001247, R01ES030940 Appl Environ Microbiol (2022 Mar 22) 35138926 Exiting the NIEHS site 2022 
Pandemic Influenza Infection Promotes Streptococcus pneumoniae Infiltration, Necrotic Damage, and Pr ...   Platt, Maryann P; Lin, Yi-Han; Wiscovitch-Russo, Rosana; Yu, Yanbao; Gonzalez-Juarbe, Norberto R01ES030227 mBio (2022 Feb 22) 35089061 Exiting the NIEHS site 2022 
Perfluorinated Carboxylic Acids with Increasing Carbon Chain Lengths Upregulate Amino Acid Transport ...   Lim, Joe Jongpyo; Suh, Youjun; Faustman, Elaine M; Cui, Julia Yue P30ES007033, R01ES030197, R01ES031098, T32ES007032 Drug Metab Dispos (2022 Oct) 34857530 Exiting the NIEHS site 2022 
Pregnane X Receptor and the Gut-Liver Axis: A Recent Update.   Dutta, Moumita; Lim, Joe Jongpyo; Cui, Julia Yue P30ES005605, P30ES007033, R01ES030197, R01ES031098, T32ES007032 Drug Metab Dispos (2022 Apr) 34862253 Exiting the NIEHS site 2022 
Targeted Intracellular Demethylation of Methylmercury Enhances Elimination Kinetics and Reduces Deve ...   Krout, Ian N; Scrimale, Thomas; Rand, Matthew D P30ES001247, R01ES030940, T32ES007026 Toxicol Sci (2022 Nov 23) 36200918 Exiting the NIEHS site 2022 
The disposition of polychlorinated biphenyls (PCBs) differs between germ-free and conventional mice.   Li, Xueshu; Lim, Joe Jongpyo; Wang, Kai; Prasad, Bhagwat; Bhatt, Deepak K; Cui, Julia Yue; Leh ... P30ES005605, P30ES007033, P42ES013661, R01ES014901, R01ES031098, T32ES007032 Environ Toxicol Pharmacol (2022 May) 35331926 Exiting the NIEHS site 2022 
Understanding the physiological functions of the host xenobiotic-sensing nuclear receptors PXR and C ...   Little, Mallory; Dutta, Moumita; Li, Hao; Matson, Adam; Shi, Xiaojian; Mascarinas, Gabby; Moll ... P30ES007033, R01ES030197, R01ES031098, R25ES025503 Acta Pharm Sin B (2022 Feb) 35256948 Exiting the NIEHS site 2022 
An Inexpensive Imaging Platform to Record and Quantitate Bacterial Swarming.   Chen, Weijie; Mani, Sridhar; Tang, Jay X R01ES030197 Bio Protoc (2021 Sep 20) 34692912 Exiting the NIEHS site 2021 
An integrated host-microbiome response to atrazine exposure mediates toxicity in Drosophila.   Brown, James B; Langley, Sasha A; Snijders, Antoine M; Wan, Kenneth H; Morris, Siti Nur Sarah; ... R01ES031322 Commun Biol (2021 Nov 24) 34819611 Exiting the NIEHS site 2021 
Bacterial Swarmers Enriched During Intestinal Stress Ameliorate Damage.   De, Arpan; Chen, Weijie; Li, Hao; Wright, Justin R; Lamendella, Regina; Lukin, Dana J; Szymcza ... R01ES030197 Gastroenterology (2021 07) 33741315 Exiting the NIEHS site 2021 
Cadmium exposure modulates the gut-liver axis in an Alzheimer's disease mouse model.   Zhang, Angela; Matsushita, Megumi; Zhang, Liang; Wang, Hao; Shi, Xiaojian; Gu, Haiwei; Xia, Z ... P30ES007033, R01ES030197, R01ES031098, T32ES007032, T32ES015459 Commun Biol (2021 Dec 15) 34912029 Exiting the NIEHS site 2021 
Characterization of the Metabolic Pathways of 4-Chlorobiphenyl (PCB3) in HepG2 Cells Using the Metab ...   Zhang, Chun-Yun; Flor, Susanne; Ruiz, Patricia; Ludewig, Gabriele; Lehmler, Hans-Joachim P30ES005605, P42ES013661, R01ES014901, R01ES031098 Environ Sci Technol (2021 07 06) 34125531 Exiting the NIEHS site 2021 
Confinement discerns swarmers from planktonic bacteria.   Chen, Weijie; Mani, Neha; Karani, Hamid; Li, Hao; Mani, Sridhar; Tang, Jay X R01ES030197 Elife (2021 04 22) 33884952 Exiting the NIEHS site 2021 
Consideration on Efficient Recombinant Protein Production: Focus on Substrate Protein-Specific Compa ...   Yano, Naohiro; Emi, Tania; Gregory, David J; Fedulov, Alexey V R01ES030227 Protein J (2021 10) 34052952 Exiting the NIEHS site 2021 
Contribution of trace element exposure to gestational diabetes mellitus through disturbing the gut m ...   Zhang, Yuqing; Chen, Ting; Zhang, Yiyun; Hu, Qi; Wang, Xu; Chang, Hang; Mao, Jian-Hua; Snijde ... R01ES031322 Environ Int (2021 08) 33774496 Exiting the NIEHS site 2021 
Deciphering structural bases of intestinal and hepatic selectivity in targeting pregnane X receptor ...   Li, Hao; Illés, Peter; Karunaratne, Chamini V; Nordstrøm, Lars Ulrik; Luo, Xiaoping; Yang, Ann ... R01ES030197 Bioorg Chem (2021 Apr) 33636438 Exiting the NIEHS site 2021 
Disposition of PCB 11 in Mice Following Acute Oral Exposure.   Zhang, Chun-Yun; Klocke, Carolyn R; Lein, Pamela J; Lehmler, Hans-Joachim P30ES005605, P42ES013661, R01ES014901, R01ES031098 Chem Res Toxicol (2021 04 19) 33734669 Exiting the NIEHS site 2021 
Enhanced Detection of Short-Chain Fatty Acids Using Gas Chromatography Mass Spectrometry.   Gu, Haiwei; Jasbi, Paniz; Patterson, Jeffrey; Jin, Yan R01ES030197 Curr Protoc (2021 Jun) 34165916 Exiting the NIEHS site 2021 
Evaluation of the Effects of Library Preparation Procedure and Sample Characteristics on the Accurac ...   Gaulke, Christopher A; Schmeltzer, Emily R; Dasenko, Mark; Tyler, Brett M; Vega Thurber, Rebecc ... R01ES030226 mSystems (2021 Oct 26) 34636674 Exiting the NIEHS site 2021 
Expanded Diversity and Phylogeny of mer Genes Broadens Mercury Resistance Paradigms and Reveals an O ...   Christakis, Christos A; Barkay, Tamar; Boyd, Eric S R01ES030940 Front Microbiol (2021) 34248899 Exiting the NIEHS site 2021 
Gut microbiome partially mediates and coordinates the effects of genetics on anxiety-like behavior i ...   Jin, X; Zhang, Y; Celniker, S E; Xia, Y; Mao, J-H; Snijders, A M; Chang, H R01ES031322 Sci Rep (2021 01 11) 33431988 Exiting the NIEHS site 2021 
Host genetics and gut microbiota cooperatively contribute to azoxymethane-induced acute toxicity in ...   Zhong, Chenhan; He, Li; Lee, Sun-Young; Chang, Hang; Zhang, Yuqing; Threadgill, David W; Yuan, ... R01ES031322 Arch Toxicol (2021 03) 33458792 Exiting the NIEHS site 2021 
Integrated analysis of behavioral, epigenetic, and gut microbiome analyses in AppNL-G-F, AppNL-F, an ...   Kundu, Payel; Torres, Eileen Ruth S; Stagaman, Keaton; Kasschau, Kristin; Okhovat, Mariam; Hold ... R01ES030226, T32ES007060 Sci Rep (2021 02 25) 33633159 Exiting the NIEHS site 2021 
Key Characteristics of Cardiovascular Toxicants.   Lind, Lars; Araujo, Jesus A; Barchowsky, Aaron; Belcher, Scott; Berridge, Brian R; Chiamvimonva ... P30ES029067, P42ES004699, P42ES004705, P42ES027704, R01ES029395, R01ES032806 Environ Health Perspect (2021 Sep) 34558968 Exiting the NIEHS site 2021 
Methylome of skeletal muscle tissue in patients with hypertension and diabetes undergoing cardiopulm ...   Aghagoli, Ghazal; Del Re, Andrew; Yano, Naohiro; Zhang, Zhiqi; Gheit, Ahmad Aboul; Phillips, R ... R01ES030227 Epigenomics (2021 Dec) 34802257 Exiting the NIEHS site 2021 
Neonatal Exposure to BPA, BDE-99, and PCB Produces Persistent Changes in Hepatic Transcriptome Assoc ...   Lim, Joe Jongpyo; Dutta, Moumita; Dempsey, Joseph L; Lehmler, Hans-Joachim; MacDonald, James; B ... P30ES005605, P30ES007033, P30ES030285, R01ES030197, R01ES031098, T32ES007032 Toxicol Sci (2021 Oct 27) 34453844 Exiting the NIEHS site 2021 
Nontarget analysis reveals gut microbiome-dependent differences in the fecal PCB metabolite profiles ...   Li, Xueshu; Liu, Yanna; Martin, Jonathan W; Cui, Julia Yue; Lehmler, Hans-Joachim P30ES005605, P30ES007033, P42ES013661, R01ES014901, R01ES030197, R01ES031098 Environ Pollut (2021 Jan 01) 33032095 Exiting the NIEHS site 2021 
Phylogenetic Integration Reveals the Zebrafish Core Microbiome and Its Sensitivity to Environmental ...   Sharpton, Thomas J; Stagaman, Keaton; Sieler Jr, Michael J; Arnold, Holly K; Davis 2nd, Edward ... R01ES030226 Toxics (2021 Jan 15) 33467528 Exiting the NIEHS site 2021 
Pregnane X receptor exacerbates nonalcoholic fatty liver disease accompanied by obesity- and inflamm ...   Kim, Sarah; Choi, Sora; Dutta, Moumita; Asubonteng, Jeffrey O; Polunas, Marianne; Goedken, Mic ... P30ES005605, P30ES007033, R01ES030197, R01ES031098 Biochem Pharmacol (2021 Nov) 34303710 Exiting the NIEHS site 2021 
RNA-Seq unveiled section-specific host response to lack of gut microbiota in mouse intestine.   Fu, Zidong Donna; Selwyn, Felcy Pavithra; Cui, Julia Yue; Klaassen, Curtis D P30ES007033, R01ES031098 Toxicol Appl Pharmacol (2021 12 15) 34715074 Exiting the NIEHS site 2021 
Strategies to Avoid Artifacts in Mass Spectrometry-Based Epitranscriptome Analyses.   Kaiser, Steffen; Byrne, Shane R; Ammann, Gregor; Asadi Atoi, Paria; Borland, Kayla; Brecheisen, ... R01ES026856, R01ES031576, T32ES007020 Angew Chem Int Ed Engl (2021 Oct 25) 34339593 Exiting the NIEHS site 2021 
The impact of stay-home policies during Coronavirus-19 pandemic on the chemical and toxicological ch ...   Altuwayjiri, Abdulmalik; Soleimanian, Ehsan; Moroni, Silvia; Palomba, Paolo; Borgini, Alessandr ... R01ES029395 Sci Total Environ (2021 Mar 01) 33213922 Exiting the NIEHS site 2021 
Thirdhand cigarette smoke leads to age-dependent and persistent alterations in the cecal microbiome ...   He, Li; Zhou, Yan-Xia; Zhang, Yuqing; Hang, Bo; Chang, Hang; Schick, Suzaynn F; Celniker, Sus ... R01ES031322 Microbiologyopen (2021 Jun) 34180593 Exiting the NIEHS site 2021 
Transcriptomic and epigenomic effects of insoluble particles on J774 macrophages.   Emi, T; Rivera, L M; Tripathi, V C; Yano, N; Ragavendran, A; Wallace, J; Fedulov, Alexey V R01ES030227 Epigenetics (2021 10) 33054565 Exiting the NIEHS site 2021 
Comprehensive Isotopic Targeted Mass Spectrometry: Reliable Metabolic Flux Analysis with Broad Cover ...   Shi, Xiaojian; Xi, Bowei; Jasbi, Paniz; Turner, Cassidy; Jin, Yan; Gu, Haiwei R01ES030197 Anal Chem (2020 Sep 01) 32697570 Exiting the NIEHS site 2020 
Drug Mimicry: Promiscuous Receptors PXR and AhR, and Microbial Metabolite Interactions in the Intest ...   Dvořák, Zdeněk; Sokol, Harry; Mani, Sridhar R01ES030197 Trends Pharmacol Sci (2020 12) 33097284 Exiting the NIEHS site 2020 
Fatty liver and impaired hepatic metabolism alter the congener-specific distribution of polychlorina ...   Li, Xueshu; Zhang, Chunyun; Wang, Kai; Lehmler, Hans-Joachim P30ES005605, P42ES013661, R01ES014901, R01ES031098 Environ Pollut (2020 Nov) 32712482 Exiting the NIEHS site 2020 
Garcinoic Acid Is a Natural and Selective Agonist of Pregnane X Receptor.   Bartolini, Desirée; De Franco, Francesca; Torquato, Pierangelo; Marinelli, Rita; Cerra, Bruno; ... R01ES030197 J Med Chem (2020 04 09) 32160459 Exiting the NIEHS site 2020 
Garcinoic acid prevents β-amyloid (Aβ) deposition in the mouse brain.   Marinelli, Rita; Torquato, Pierangelo; Bartolini, Desirée; Mas-Bargues, Cristina; Bellezza, Gui ... R01ES030197 J Biol Chem (2020 08 14) 32616652 Exiting the NIEHS site 2020 
Gut Microbiome Critically Impacts PCB-induced Changes in Metabolic Fingerprints and the Hepatic Tran ...   Lim, Joe Jongpyo; Li, Xueshu; Lehmler, Hans-Joachim; Wang, Dongfang; Gu, Haiwei; Cui, Julia Yu ... P30ES005605, P30ES007033, P42ES013661, R01ES030197, R01ES031098, T32ES007032 Toxicol Sci (2020 09 01) 32544245 Exiting the NIEHS site 2020 
Human microbial metabolite mimicry as a strategy to expand the chemical space of potential drugs.   Li, Hao; Ranhotra, Harmit S; Mani, Sridhar; Dvořák, Zdeněk; Sokol, Harry; Müller, Rolf R01ES030197 Drug Discov Today (2020 Sep) 32562605 Exiting the NIEHS site 2020 
Impact of air pollution on intestinal redox lipidome and microbiome.   Feng, Juan; Cavallero, Susana; Hsiai, Tzung; Li, Rongsong R01ES029395 Free Radic Biol Med (2020 05 01) 31904545 Exiting the NIEHS site 2020 
Nick-seq for single-nucleotide resolution genomic maps of DNA modifications and damage.   Cao, Bo; Wu, Xiaolin; Zhou, Jieliang; Wu, Hang; Liu, Lili; Zhang, Qinghua; DeMott, Michael S; ... R01ES031576 Nucleic Acids Res (2020 Jul 09) 32484547 Exiting the NIEHS site 2020 
Protein Domain Guided Screen for Sequence Specific and Phosphorothioate-Dependent Restriction Endonu ...   Lutz, Thomas; Czapinska, Honorata; Fomenkov, Alexey; Potapov, Vladimir; Heiter, Daniel F; Cao, ... R01ES031576 Front Microbiol (2020) 33013736 Exiting the NIEHS site 2020 
Targeting the pregnane X receptor using microbial metabolite mimicry.   Dvořák, Zdeněk; Kopp, Felix; Costello, Cait M; Kemp, Jazmin S; Li, Hao; Vrzalová, Aneta; Štěpá ... P30ES007033, R01ES030197, R35ES028244 EMBO Mol Med (2020 Apr 07) 32153125 Exiting the NIEHS site 2020 
The effect of talc particles on phagocytes in co-culture with ovarian cancer cells.   Mandarino, Angelo; Gregory, David J; McGuire, Connor C; Leblanc, Brian W; Witt, Hadley; Rivera, ... P30ES000002, R01ES030227 Environ Res (2020 01) 31785414 Exiting the NIEHS site 2020 
Weak Microbial Metabolites: a Treasure Trove for Using Biomimicry to Discover and Optimize Drugs.   Dvorak, Zdenek; Klapholz, Max; Burris, Thomas P; Willing, Benjamin P; Gioiello, Antimo; Pellicc ... R01ES030197 Mol Pharmacol (2020 Oct) 32764096 Exiting the NIEHS site 2020 
Zebrafish microbiome studies make waves.   Stagaman, Keaton; Sharpton, Thomas J; Guillemin, Karen R01ES030226, T32ES007060 Lab Anim (NY) (2020 07) 32541907 Exiting the NIEHS site 2020 
Diesel Exhaust Induces Mitochondrial Dysfunction, Hyperlipidemia, and Liver Steatosis.   Yin, Fen; Gupta, Rajat; Vergnes, Laurent; Driscoll, Will S; Ricks, Jerry; Ramanathan, Gajalaks ... R01ES029395 Arterioscler Thromb Vasc Biol (2019 09) 31340670 Exiting the NIEHS site 2019 
Diesel exhaust particles dysregulate multiple immunological pathways in murine macrophages: Lessons ...   Bhetraratana, May; Orozco, Luz D; Hong, Jason; Diamante, Graciel; Majid, Sana; Bennett, Brian ... R01ES029395, T32ES015457 Arch Biochem Biophys (2019 12 15) 31568751 Exiting the NIEHS site 2019 
Gut microbiome: An intermediary to neurotoxicity.   Dempsey, Joseph L; Little, Mallory; Cui, Julia Yue R01ES030197, T32ES007032 Neurotoxicology (2019 12) 31454513 Exiting the NIEHS site 2019 
Microbiome is a functional modifier of P450 drug metabolism.   Dempsey, Joseph L; Cui, Julia Yue R01ES030197 Curr Pharmacol Rep (2019 Dec) 33312848 Exiting the NIEHS site 2019 
Polybrominated Diphenyl Ethers and Gut Microbiome Modulate Metabolic Syndrome-Related Aqueous Metabo ...   Scoville, David K; Li, Cindy Yanfei; Wang, Dongfang; Dempsey, Joseph L; Raftery, Daniel; Mani, ... P30ES007033, R01ES030197, T32ES007032 Drug Metab Dispos (2019 08) 31123037 Exiting the NIEHS site 2019 
Pregnane X Receptor Activation Triggers Rapid ATP Release in Primed Macrophages That Mediates NLRP3 ...   Hudson, Grace; Flannigan, Kyle L; Venu, Vivek Krishna Pulakazhi; Alston, Laurie; Sandall, Chris ... R01ES030197 J Pharmacol Exp Ther (2019 07) 31004077 Exiting the NIEHS site 2019 
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