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Your Environment. Your Health.

Person Details

Superfund Research Program

James M. Tiedje

Michigan State University
Center for Microbial Ecology
1066 Bogue Street, Room 540E
Plant and Soil Sciences Building
East Lansing, MI 48824
Phone: 517-353-9021 x1287
Fax: 517-353-2917
Email: tiedjej@msu.edu

Projects

Research Briefs

Hazardous Waste Sites

Allied Paper, Inc./Portage Creek/Kalamazoo

  • Michigan State University: Molecular Insight into Polyaromatic Toxicant Degradation by Microbial Communities

HS7 and HS28

  • Michigan State University: Molecular Insight into Polyaromatic Toxicant Degradation by Microbial Communities

Mississinewia River

  • Michigan State University: Molecular Insight into Polyaromatic Toxicant Degradation by Microbial Communities

Picatinny Arsenal (USARMY)

  • Michigan State University: Molecular Insight into Polyaromatic Toxicant Degradation by Microbial Communities

Woods Pond

  • Michigan State University: Molecular Insight into Polyaromatic Toxicant Degradation by Microbial Communities

Publications

2016

  • Stedtfeld RD, Williams M, Fakher U, Johnson TA, Stedtfeld TM, Wang F, Khalife WT, Hughes M, Etchebarne B, Tiedje JM, Hashsham SA. 2016. Antimicrobial resistance dashboard application for mapping environmental occurrence and resistant pathogens. FEMS Microbiol Ecol 92:doi:10.1093/femsec/fiw020 PMID:26850162

2015

2014

2013

2012

  • Baushke SW, Stedtfeld RD, Tourlousse DM, Ahmad F, Wick LM, Gulari E, Tiedje JM, Hashsham SA. 2012. Identification of non-specific hybridization using an empirical equation fitted to non-equilibrium dissociation curves. J Microbiol Methods90(1):29-35. doi:10.1016/j.mimet.2012.04.003

2011

2010

2009

  • Sul WJ, Park J, Quensen JF, Rodrigues JM, Seliger L, Tsoi TV, Zylstra GJ, Tiedje JM. 2009. DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment. Appl Environ Microbiol75(17):5501-6. doi:10.1128/AEM.00121-09

2008

2007

2006

  • Chain PS, Denef VJ, Konstantinidis KT, Vergez LM, Agullo L, Reyes VL, Hauser L, Cordova M, Gomez L, Gonzalez M, Land M, Lao V, Larimer FW, LiPuma JJ, Mahenthiralingam E, Malfatti SA, Marx CJ, Parnell JJ, Ramette A, Richardson PM, Seeger M, Smith D, Spilker T, Sul WJ, Tsoi TV, Ulrich LE, Zhulin IB, Tiedje JM. 2006. Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility. Proceedings of the National Academy of Sciences of the United States of America (USA)103(42):15280-7.
  • Parnell JJ, Park J, Denef VJ, Tsoi TV, Hashsham SA, Quensen JF, Tiedje JM. 2006. Coping with polychlorinated biphenyl (PCB) toxicity: Physiological and genome-wide responses of Burkholderia xenovorans LB400 to PCB-mediated stress. Appl Environ Microbiol72(10):6607-14.

2004

  • Denef VJ, Park J, Tsoi TV, Rouillard JM, Zhang H, Wibbenmeyer JA, Verstraete W, Gulari E, Hashsham SA, Tiedje JM. 2004. Biphenyl and benzoate metabolism in a genomic context: Outlining genome-wide metabolic networks in Burkholderia xenovorans LB400. Appl Environ Microbiol70(8):4961-4970.
  • Goris J, De Vos P, Caballero-Mellado J, Park J, Falsen E, Quensen JF, Tiedje JM, Vandamme P. 2004. Classification of the biphenyl- and polychlorinated biphenyl-degrading strain LB400(T) and relatives as Burkholderia xenovorans sp nov. Int J Syst Evol Microbiol54(5):1677-1681.
  • Tiedje JM, Konstantinidis KT. 2004. Trends between gene content and genome size in prokaryotic species with larger genomes. Proceedings of the National Academy of Sciences of the United States of America (USA)101(9):3160-3165.

2003

  • Denef VJ, Park J, Rodrigues JM, Tsoi TV, Hashsham SA, Tiedje JM. 2003. Validation of a more sensitive method for using spotted oligonucleotide DNA microarrays for functional genomics studies on bacterial communities. Environ Microbiol5(10):933-943.
  • Park J, Li H, Tiedje JM. 2003. Determination of gene-dependent sorption of DNA on clays using a microarray technique. In: Proceedings of the 103rd General Meeting of the American Society for Microbiology, May 18-22. Washington, DC.
  • Park J, Ramsburg A, Abriola LM, Tiedje JM. 2003. Biofilm-associated utilization of biphenyl on organo-coated sand by Burkholderia sp. LB400. In: Proceedings of the General Meeting, American Society for Microbiology, May 23-27. New Orleans, LA.
  • Tiedje JM. 2003. Molecular windows into microbial communities. In: Proceedings of the International Meeting of the Federation of Korean Microbiological Societies. October 24-25. College of Science, Yonsei University, Seoul, Korea, Republic Of.
  • Tiedje JM. 2003. Molecular windows into microbial communities. In: Proceedings of the International Meeting of the Federation of Korean Microbiological Societies. October 24-25. College of Science, Yonsei University, Seoul, Korea, Republic Of.

2002

  • Dybas MJ, Hyndman DW, Heine R, Tiedje JM, Linning KD, Wiggert D, Voice TC, Zhao X, Dybas L, Criddle CS. 2002. Development, operation, and long-term performance of a full-scale biocurtain utilizing bioaugmentation. Environ Sci Technol36(16):3635-3644.

2001

  • Rodrigues JM, Maltseva OV, Tsoi TV, Helton RR, Quensen JF, Fukuda M, Tiedje JM. 2001. Development of a Rhodococcus recombinant strain for degradation products from anaerobic dechlorination of PCBs. Environ Sci Technol35(4):663-668.

2000

  • Hyndman DW, Dybas MJ, Forney L, Heine R, Mayotte T, Phanikumar MS, Tatara G, Tiedje JM, Voice TC, Wallace RB, Wiggert D, Zhao X, Criddle CS. 2000. Hydraulic characterization and design of a full-scale biocurtain. Ground Water38(3):462-474.
  • Maltseva OV, Rodrigues JM, Quensen JF, Tsoi TV, Tiedje JM. 2000. Growth of Burkholderia sp. LB400 and recombinant LH400(ohb) on simulated anaerobic dechlorination products from Aroclor 1242. In: Proceedings of the American Society for Microbiology 100th general meeting. pp.149.
  • Maltseva OV, Tsoi TV, Quensen JF, Fukuda M, Tiedje JM. 2000. Degradation of anaerobic reductive chlorination products of Aroclor 1242 by four aerobic bacteria. Biodegradation10:363-371.
  • Quensen JF, Tsoi TV, Maltseva OV, Rodrigues JM, Zwiernik MJ, Tiedje JM. 2000. Strategies for the anaerobic/aerobic biotreatment of polychlorinated biphenyls. In: Proceedings of the Society of Environmental Toxicology and Chemistry, 21st Annual Meeting, 12-16 November. Nashville, TN. pp.56.
  • Rodrigues JM, Aiello MR, Maltseva OV, Tsoi TV, Tiedje JM. 2000. A flourescent PCR-based method to quantify the recombinant Rhodococcus sp. strain RHA1 in soil. In: Proceedings of the American Society for Microbiology, 100th General Meeting, 21-25 May. Los Angeles, CA. pp.170.
  • Tiedje JM. 2000. Putting novel microbes to work on industry wastes. In: Proceedings of the Symposium for Japan Bioindustry Association. pp.47-54.
  • Tsoi TV, Cole JR, Rech S, Tiedje JM. 2000. Molecular Analysis Implicates Existence Of Two Differing Mechanisms Of Aryl Reductive Ortho-Dehalogenation In Coryneform Bacterium Strain KZ-4. In: Proceedings of the American Society for Microbiology 100th general meeting.

1999

  • Hrywna Y, Tsoi TV, Maltseva OV, Quensen JF, Tiedje JM. 1999. Construction and characterization of two recombinant bacteria that grow on ortho- and para-substituted chlorobiphenyls. Appl Environ Microbiol65(5):2163-2169.
  • Tsoi TV, Cole JR, Maltseva OV, Rech S, Quensen JF, Rodrigues JM, Spain J, Tiedje JM. 1999. Promiscuous Dehalogenating Dioxygenase (ISP) From Pseudomonas aeruginosa 142: Evolutionary Model And Metabolic Engineering Tool. In: Proceedings of the International Symposium Pseudomonas. Maui, HI.
  • Tsoi TV, Plotnikova EG, Cole JR, Guerin WF, Bagdasarian M, Tiedje JM. 1999. Cloning, expression and nucleotide sequence of the Pseudomonas aeruginosa strain 142 ohb genes coding for oxygenolytic ortho-dehalogenation of halobenzoates. Appl Environ Microbiol65(5):2151-2162.
  • Urbance JW, Kukor JJ, Tiedje JM. 1999. Analysis of the phylogenetic distribution of biodegradative bacteria. In: Proceedings of the International Symposium Pseudomonas. Maui, HI.
  • Ye D, Quensen JF, Tiedje JM, Boyd SA. 1999. 2-Bromoethanesulfonate, sulfate, molybdate, and ethanesulfonate inhibit anaerobic dechlorination of polychlorobiphenyls by pasteurized microorganisms. Appl Environ Microbiol65:327-329.
  • Zhou J, Tiedje JM. 1999. Development of phylogenetic probes specific to Burkholderia cepacia G4. In: Proceedings of the International In Situ and On-site Bioreclamation Symposium. San Diego, CA. pp.65-75.

1998

  • Dybas MJ, Barcelona MJ, Bezborodnikov S, Davies S, Forney L, Kawka O, Mayotte T, Sepulveda-Torres Ld, Smalla K, Sneathen M, Tiedje JM, Voice TC, Wiggert D, Witt ME, Criddle CS. 1998. Pilot-scale evaluation of bioaugmentation for in situ remediation of a carbon tetrachloride-contaminated aquifer. Environ Sci Technol32(22):3598-3611.
  • Maltseva OV, Quensen JF, Tsoi TV, Tiedje JM. 1998. Intermediate products recently discovered to accumulate during the aerobic degradation of PCB congeners formed from anaerobic dechlorination of Aroclor 1242. In: Proceedings Superfund Basic Research Program: A Decade of Improving Health through Multi-Disciplinary Research. Chapel Hill, NC. pp.92.

1997

  • Massol-Deya A, Weller R, Rios-Hernandez L, Zhou J, Hickey RF, Tiedje JM. 1997. Succession and convergence of biofilm communities in fixed-film reactors treating aromatic hydrocarbons in groundwater. Appl Environ Microbiol63(1):270-276.
  • Quensen JF, Tiedje JM. 1997. Evaluation of PCB Dechlorination in Sediments. In: Methods in Biotechnology, V. 2: Bioremediation Protocols. Humana Press Inc, Totowa, NJ.
  • Zhou J, Palumbo AV, Tiedje JM. 1997. Sensitive detection of a novel class of toluene-degrading denitrifiers, Azoarcus tolulyticus, with small-subunit rRNA primers and probes. Appl Environ Microbiol63(6):2384-2390.

1996

  • Chee-Sanford JC, Frost JW, Fries MR, Zhou J, Tiedje JM. 1996. Evidence for acetyl coenzyme A and cinnamoyl coenzyme A in the anaerobic toluene mineralization pathway in Azoarcus tolulyticus Tol-4. Appl Environ Microbiol62(3):964-973.
  • Migaud ME, Chee-Sanford JC, Tiedje JM, Frost JW. 1996. Benzylfumaric, benzylmaleic, Z- and E-phenylitaconic acids: synthesis, characterization and correlation with a metabolite generated by Azoarcus tolulyticus strain Tol-4 during anaerobic toluene degradation. Appl Environ Microbiol62(3):974-978.
  • Zhou J, Bruns MA, Tiedje JM. 1996. DNA recovery from soils of diverse composition. Appl Environ Microbiol62:316-322.

1995

  • Tiedje JM. 1995. New advances and challenges for bioremediation. In: Proceedings of Bioremediation: The Tokyo 1994 Workshop, OECD (Organisation for Economic Co-Operation and Development). Paris, France. pp.81-87.
  • Tiedje JM, Sanford RA, Massol-Deya A. 1995. Advantages and disadvantages of consortia in bioremediation. In: Proceedings of Bioremediation: The Tokyo 1994 Workshop, OECD (Organisation for Economic Co-Operation and Development). Paris, France. pp.357-367.
  • Tiedje JM, Thiem SM, Massol-Deya A, Ka JO, Fries MR. 1995. Tracking microbial populations effective in reducing exposure. Environ Health Perspect 103(supp.5):117-120.
  • Zhou J, Fries MR, Chee-Sanford JC, Tiedje JM. 1995. Phylogenetic analyses of a new group of denitrifiers capable of anaerobic growth of toluene and description of Azoarcus tolulyticus sp. nov. International Journal of Systemic Bacteriology45(3):500-506.
  • Zhou J, Tiedje JM. 1995. Gene transfer from a bacterium injected into an aquifer to an indigenous bacterium. Mol Ecol4(5):613-618.

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