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Your Environment. Your Health.

Project Publications: University of Cincinnati: Transport and Biodegradation of Toxic Organics in Biofilms

Superfund Research Program

Transport and Biodegradation of Toxic Organics in Biofilms

Project Leader: Paul L. Bishop
Grant Number: P42ES004908
Funding Period: 1995 - 2006

Publications

2006

  • Lee J, Jang A, Myers RR, Bhadri PR, Timmons WD, Beyette FR, Bishop PL, Papautsky I. 2006. Fabrication of microelectrode arrays for in situ sensing of oxidation reduction potentials. Sens Actuators B Chem 115(1):220-226.

2005

  • Gillam DE, Bishop PL, Love NG. 2005. A study of glutathione-gated potassium efflux in biofilms using potassium microelectrodes. Environ Eng Sci 22:489-495. doi:10.1089/ees.2005.22.489
  • Jang A, Lee J, Bhadri PR, Kumar SA, Timmons WD, Beyette FR, Papautsky I, Bishop PL. 2005. Miniaturized redox potential probe for in situ environmental monitoring. Environ Sci Technol 39(16):6191-6197. PMID:16173580
  • Jang A, Okabe S, Watanabe Y, Kim IS, Bishop PL. 2005. Measurement of growth rate of nitrosomonas europaea in partially submerged rotating biological contactor by fluorescent in situ hybridization (FISH). Water Environ Res 4(5):413-420.
  • Wang J, Bishop PL. 2005. Development of a phosphate ion-selective microelectrode and its use in studies of the enhanced biological phosphorus removal (EBPR) process. Environ Technol 26(4):381-388. doi:10.1080/09593332608618549 PMID:15906489

2004

  • Kupferle MJ, Galal A, Bishop PL. 2004. Electrolytic treatment of azo dyes containing o,o '-dihydroxyazo complexation sites. Journal of Environmental Engineering and Science 3(4):223-229.
  • Li J, Bishop PL. 2004. Adsorption and biodegradation of azo dye in biofilm processes. Water Sci Technol 49(11-12):237-245. PMID:15303747
  • Li J, Bishop PL. 2004. Time course observations of nitrifying biofilm development using microelectrodes. Journal of Environmental Engineering and Science 3(6):523-528.
  • Rodriguez S, Bishop PL. 2004. Biofilm growth, structure and composition during in situ bioremediation of naphthalene. In: The Forth International Conference on Remediation of Chlorinated and Recalcitrant Compounds, May 24-27. Battelle, Monterey, CA.

2003

  • Bishop PL. 2003. The effect of biofilm heterogeneity on metabolic processes. In: Biofilms in Wastewater Treatment: An Interdisciplinary Approach. IWA Publishing, London, United Kingdom. pp.125-146.
  • Bishop PL, Wuertz S. 2003. Modeling and simulation: Concluding remarks. In: Biofilms in Wastewater Treatment: An Interdisciplinary Approach. IWA Publishing, London, United Kingdom. pp.118-120.
  • Coughlin MF, Kinkle BK, Bishop PL. 2003. High performance degradation of azo dye Acid Orange 7 and sulfanilic acid in a laboratory scale reactor after seeding with cultured bacterial strains. Water Res 37(11):2757-2763. PMID:12753854
  • Gillam DE, Bishop PL, Rhodes R, Love NG. 2003. Adaptation of subsurface microbial communities in response to electrophilic chemical stressors. In: Proceedings of the IWA (International Water Association) Biofilm Congress, September 14-17. Cape Town, South Africa.
  • Jang A, Bishop PL, Okabe S, Lee S, Kim IS. 2003. Effect of dissolved oxygen concentration on the biofilm and in situ analysis by fluorescence in situ hybridization (FISH) and microelectrodes. Water Sci Technol 47(1):49-57. PMID:12578173
  • Jang A, Yoon YH, Kim IS, Kim KS, Bishop PL. 2003. Characterization and evaluation of aerobic granules in sequencing batch reactor. J Biotechnol 101(1-2):71-82. PMID:14511911
  • Li J, Bishop PL. 2003. Adsorption and biodegradation of azo dye in biofilm processes. In: Proceedings of the IWA (International Water Association) Biofilm Congress, September 14-17. Cape Town, South Africa.
  • Li J, Bishop PL. 2003. Monitoring the influence of toxic compounds on microbial denitrifying biofilm processes. Water Sci Technol 47(5):211-216. PMID:12701931
  • Rhodes R, Chakraborty I, Stevens A, Love NG, Gillam DE, Bishop PL. 2003. Subsurface microbial adaptation to chemical stressors. In: Proceedings of the 19th Annual International Conference on Soils, Sediments and Water, October 20-23. Amherst, MA.
  • Rodriguez S, Bishop PL. 2003. Characterization of soil biofilms for the degradation of polycyclic aromatic hydrocarbons. In: Proceedings of the IWA (International Water Association) Biofilm Congress, September 14-17. Cape Town, South Africa.
  • Wuertz S, Bishop PL. 2003. Architecture, population structure and function: Concluding remarks. In: Biofilms in Wastewater Treatment: An Interdisciplinary Approach. IWA Publishing, London, United Kingdom.
  • Zhang X, Bishop PL. 2003. Biodegradability of biofilm extracellular polymeric substances. Chemosphere 50:63-69. PMID:12656230

2002

  • Coughlin MF, Kinkle BK, Bishop PL. 2002. Degradation of Acid Orange 7 in an aerobic biofilm. Chemosphere 46(1):11-19. PMID:11806522
  • Ebihara T, Bishop PL. 2002. Effect of acetate on biofilm utilization in PAH bioremediation. Environ Eng Sci 19:305-320.
  • Ebihara T, Bishop PL. 2002. Influence of supplemental acetate on bioremediation for dissolved PAHs. J Environ Eng (New York) 128:505-513.
  • Li J, Bishop PL. 2002. In situ identification of azo dye inhibition effects on nitrifying biofilms using microelectrodes. Water Sci Technol 46(1-2):207-214. PMID:12216626
  • Yu T, Lu R, Bishop PL. 2002. Microelectrodes as novel research tools for environmental biofilm studies. In: Proceedings of the CSCE/ASCE (Canadian Society for Civil Engineering and American Society of Civil Engineers ) Joint Conference on Environmental Engineering: An International Perspective on Environmental Engineering, July 21-24. Niagara Falls, Ontario, Canada.

2001

  • Jang A, Bishop PL, Okabe S, Lee S, Kim IS. 2001. Effect of dissolved oxygen concentration on the biofilm in situ analysis by fluorescence in situ hybridization (FISH) and microelectrodes. In: Proceedings of the IWA (International Water Association) Asia Environmental Technology, Oct. 30 - Nov. 1. Suntec City, Singapore. pp.129-136.
  • Yu T, Bishop PL. 2001. Stratification and redox potential change in an aerobic and sulfate-reducing biofilm studied using microelectrodes. Water Environ Res 73:368-373.
  • Zhang X, Bishop PL. 2001. Spatial distribution of extracellular polymeric substances in biofilms. J Environ Eng (New York) 127:850-856.

2000

  • Bishop PL. 2000. From biofilm engineering to reactor engineering. In: Proceedings of the 4th International Symposium on Environmental Biotechnology. Noordwijkerhout, Netherlands. pp.88-91.
  • Bishop PL. 2000. Modeling and simulation: An introduction. In: Biofilms in Wastewater Treatment: An Interdisciplinary Approach. IWA Publishing, London, United Kingdom.
  • Bishop PL. 2000. Pollution prevention: A new paradigm for engineering education. In: Environmental Challenges. Kluwer International Publishers, Netherlands.
  • Bishop PL, Hebatpuria V. 2000. Stabilization/solidification of toxic organics in soils. In: Vadose Zone, Science and Technology Solutions. Battelle Press, Columbus, OH.
  • Bishop PL, Yu T. 2000. Measurement of constituent profiles in environmental biofilms using microelectrodes. In: Proceedings of the Third International Symposium on Advanced Environmental Monitoring. Cheju Island, Korea, Republic Of.
  • Li J, Bishop PL. 2000. Microelectrode study of biofilms at different stages of biofilm formation. In: Proceedings of the 220th ACS (American Chemical Society) National Meeting - Fall 2000. Washington, DC.
  • Li J, Bishop PL. 2000. Spatial distribution of microbial activities in biofilms determined by microelectrodes. In: Proceedings of the 73nd Annual Water Environment Federation Conference. Anaheim, CA.
  • Mourad-Agha MA, Bishop PL. 2000. Development of a specific application of a series anaerobic-aerobic treatment for azo dye degradation. In: Proceedings - Geoenvironment. Aleppo, Syrian Arab Republic.
  • Palisdottir G, Bishop PL. 2000. From Microelectrodes and Gene Probes to Full-scale Nitrifying Plants. In: Biofilms in Wastewater Treatment: An Interdisciplinary Approach. IWA Publishing, London, United Kingdom.
  • Palisdottir G, Bishop PL. 2000. The use of time series models for forecasting trickling filter performance. In: Proceedings of Paris 2000: The First World Congress of the IWA (International Water Association). Paris, France.
  • Zhang X, Bishop PL. 2000. Biodegradability of biofilm EPS by its own producers. In: Proceedings of the Conference on Microbial Extracellular Polymeric Substances - The Construction Material of Biofilms. Mulheim, Germany.
  • Zhang X, Bishop PL. 2000. Biofilm extracellular polymeric substances biodegradability study. In: Proceedings of Paris 2000: The First World Congress of the IWA (International Water Association). Paris, France.

1999

  • Bishop PL, Yu T. 1999. A microelectrode study of redox potential change in biofilms. Water Sci Technol 39(7):179-185.
  • Coughlin MF, Kinkle BK, Bishop PL. 1999. Degradation of azo dyes containing aminonaphthol by Sphingomonas sp strain 1CX. J Ind Microbiol 23:341-346.
  • Ebihara T, Bishop PL. 1999. Biofilm structural forms utilized in bioremediation of organic compounds. Water Sci Technol 39(7):203-210.
  • Kupferle M, Bishop PL, Mark HB, Galal A, Atta NF. 1999. Electrochemical color removal of dyes and spectroelectrochemical characterization of the treatment process. In: Proceedings of the Second International Symposium on Sustainability in Desert Regions. Al Ain, United Arab Emirates.
  • Palisdottir G, Bishop PL. 1999. Microelectrode and gene probe examination of a nitrifying biofilm under various trickling filter operating conditions. In: Microbial Ecology of Biofilms. Elsevier Science, Amsterdam, Netherlands. pp.413-415.
  • Yu T, Bishop PL. 1999. A microelectrode study of redox potential change in biofilms. In: Microbial Ecology of Biofilms. Elsevier Science, Amsterdam, Netherlands. pp.209-216.
  • Zhang X, Bishop PL. 1999. Comparison of extracellular polymer extraction methods on biofilm. In: Microbial Ecology of Biofilms. Elsevier Science, Amsterdam, Netherlands. pp.270-277.
  • Zhang X, Bishop PL. 1999. Spatial Distribution of Extracellular Polymeric Substances in Biofilms. In: Proceedings of the 72nd Annual Water Environment Federation Conference. New Orleans, LA.
  • Zhang X, Bishop PL. 1999. Spatial distribution of extracellular polymeric substances in biofilms. In: Proceedings of the 72nd Annual Water Environment Federation Conference. New Orleans, LA.
  • Zhang X, Bishop PL, Kinkle BK. 1999. Comparison of extraction methods for quantifying extracellular polymers in biofilms. Water Sci Technol 39:211-218.

1998

  • Atta NF, Galal A, Mark HB, Yu T, Bishop PL. 1998. Conducting polymer ion sensor electrodes-III. Potentiometric sulfide ion selective electrode. Talanta 47:987-999. PMID:18967403
  • Bishop PL. 1998. The Effect of Biofilm Heterogeneity on Biodegradation Kinetics. In: Proceedings of the International Workshop on Biofilms in Aerobic Wastewater Treatment: An Interdisciplinary Approach. Garching, Germany.
  • Ebihara T, Bishop PL. 1998. Biofilm Structural Forms in Porous Media Utilized in Organic Compound Degradation. In: Proceedings of the IAWQ (International Association on Water Quality) Specialty Conference on Microbial Ecology of Biofilms: Concepts, Tools and Applications. Lake Bluff, IL. pp.255-262.
  • Galal A, Atta NF, Bishop PL, Mark HB. 1998. Sensors Based on Conducting Polymer Electrodes. Chapter 18 in: Polymers in Sensors: Theory and Practice. American Chemical Society, Washington, DC. pp.210-230.
  • Galal A, Atta NF, Kupferle M, Bishop PL, Mark HB. 1998. Color Removal and 'Other' Contaminants of Different Dyes Using Electrochemistry at Regular and Polymer Electrodes-A Spectrochemical Approach. In: Proceedings of Pittcon 1998. New Orleans, LA.
  • Palisdottir G, Bishop PL. 1998. Microelectrode and Gene Probe Examination of a Nitrifying Biofilm Under Various Trickling Filter Operating Conditions. In: Proceedings of the IAWQ (International Association on Water Quality) Specialty Conference on Microbial Ecology of Biofilms: Concepts, Tools and Applications. Lake Bluff, IL. pp.413-415.
  • Tepper A, Bishop PL, Coughlin MF, Kinkle BK. 1998. Aerobic Azo Dye Degradation by Sphingomonas Isolates in Wastewater Treatment Biofilms. In: Proceedings of the 71st Annual Water Environment Federation Conference. Orlando, FL. pp.195-202.
  • Yu T, Bishop PL. 1998. A Microelectrode Study of Redox Potential Change in Biofilms. In: Proceedings of the IAWQ (International Association on Water Quality) Specialty Conference on Microbial Ecology of Biofilms: Concepts, Tools and Applications. Lake Bluff, IL. pp.209-216.
  • Yu T, Bishop PL. 1998. Fabrication and evaluation of a sulfide microelectrode for biofilm studies. Chapter 18 in: Polymers in Sensors: Theory and Practice. American Chemical Society, Washington, DC. pp.231-247.
  • Yu T, Bishop PL. 1998. Redox Potentials in Biofilms: A Theoretical Enquiry and Experimental Investigation. In: Proceedings of the 71st Annual Water Environment Federation Conference. Orlando, FL. pp.3-12.
  • Yu T, Bishop PL. 1998. Stratification of microbial metabolic processes and redox potential change in sulfate-reducing biofilms studied using oxygen, sulfide, pH and redox potential microelectrodes. Water Sci Technol 37(4-5):195-198.
  • Zhang X, Bishop PL. 1998. Comparison of Extracellular Polymer Extraction Methods on Biofilm. In: Proceedings of the IAWQ (International Association on Water Quality) Specialty Conference on Microbial Ecology of Biofilms: Concepts, Tools and Applications. Lake Bluff, IL. pp.270-277.
  • Zhang X, Bishop PL, Kinkle BK. 1998. Extraction of Extracellular Polymers from Biofilms Using Five Different Methods. In: Proceedings of the 71st Annual Water Environment Federation Conference. Orlando, FL. pp.13-28.
  • Zhang X, Bishop PL, Kupferle MJ. 1998. Measurement of polysaccharides and protein in biofilm extracellular polymers. Water Sci Technol 37(4-5):345-348.

1997

  • Atta NF, Galal A, Bishop PL, Mark HB. 1997. Conducting Polymer Ion-Selective Electrodes. II: Poly(Aniline) Sulfate-Selective Electrode. In: Proceedings of Pittcon 1997. Atlanta, GA.
  • Bishop PL. 1997. Biofilm structure and kinetics. Water Sci Technol 36:287-294.
  • Bishop PL. 1997. Biofilm structure and kinetics. In: Biofilm Systems III. Elsevier Science, New York, NY.
  • Bishop PL, Gibbs JT, Cunningham BE. 1997. Relationship between concentration and hydrodynamic boundary layers over biofilms. Environ Technol 18(4):375-386. doi:10.1080/09593331808616551
  • Coughlin MF, Tepper A, Kinkle BK, Bishop PL. 1997. Characterization of aerobic azo-dye degrading bacteria and their activity in a wastewater biofilm. In: Biofilm Systems III. Elsevier Science, New York, NY.
  • Coughlin MF, Tepper A, Kinkle BK, Bishop PL. 1997. Characterization of aerobic azo-dye degrading bacteria and their activity in a wastewater biofilm. Water Sci Technol 36:215-220.
  • Galal A, Atta NF, Bishop PL, Mark HB. 1997. Sensors Based on Conducting Polymer Electrodes. In: Chemistry and Technology of Chemical and Biosensors. American Chemical Society, Washington, DC.
  • Palisdottir G, Bishop PL. 1997. Nitrifying biotower upsets due to snails and their control. Water Sci Technol 36:247-254.
  • Palisdottir G, Bishop PL. 1997. Nitrifying biotower upsets due to snails and their control. In: Biofilm Systems III. Elsevier Science, New York, NY.
  • Taylor DG, Breen A, Bishop PL. 1997. Determination of phenol-degrader distribution in biofilms using gene probes. Water Res 31:119-129.
  • Tepper A, Bishop PL, Coughlin MF, Kinkle BK. 1997. Establishment of Aerobic Azo Dye Degrading Bacteria in Laboratory Biofilms. In: Proceedings of the 2nd IAWQ (International Association on Water Quality) International Conference on Microorganisms in Activated Sludge and Biofilm Processes. Berkeley, CA. pp.441-444.
  • Yu T, Bishop PL. 1997. Stratification and Redox Potential Change in Sulfate-Reducing Biofilms Studied Using Microelectrodes. In: Proceedings of the Water Environment Federation: WEFTEC (The Water Environment Federation's Technical Exhibition and Conference) '97. Chicago, IL. pp.73-82.
  • Yu T, Bishop PL. 1997. Stratification of Microbial Metabolic Processes and Redox Potential Change in Sulfate-Reducing Biofilms Studied Using Oxygen, Sulfide, pH and Redox Potential Microelectrodes. In: Proceedings of the 2nd IAWQ (International Association on Water Quality) International Conference on Microorganisms in Activated Sludge and Biofilm Processes. Berkeley, CA. pp.437-440.
  • Yu T, Bishop PL, Galal A, Mark HB. 1997. Fabrication and Evaluation of a Sulfide Microelectrode for Biofilm Studies. In: Chemistry and Technology of Chemical and Biosensors. American Chemical Society, Washington, DC.
  • Zhang X, Bishop PL, Kupferle M. 1997. Measurement of Polysaccharides and Protein in Biofilm Extracellular Polymers. In: Proceedings of the 2nd IAWQ (International Association on Water Quality) International Conference on Microorganisms in Activated Sludge and Biofilm Processes. Berkeley, CA. pp.551-554.
  • Zhou Q, Bishop PL. 1997. Determination of oxygen profiles and diffusivity in encapsulated biomass k-carrageenan gel beads. Water Sci Technol 36:271-277.
  • Zhou Q, Bishop PL. 1997. Determination of oxygen profiles and diffusivity in encapsulated biomass k-carrageenan gel beads. In: Biofilm Systems III. Elsevier Science, New York, NY.

1996

  • Bishop PL. 1996. The Biodegradation of Textile Dyes Using Biofilm Treatment Systems. In: Proceedings-Biodegradacion de Compuestos Organicos Industriales Conferencia. National Autonomous University of Mexico. Mexico City, Mexico. pp.1-11.
  • Bishop PL, Pehkonen S, Siddiqui K. 1996. Developing Regulations for Effluent Color Elimination at Wastewater Treatment Plants. In: Proceedings of the Water Environment Federation WEFTEC (The Water Environment Federation's Technical Exhibition and Conference) '96. Dallas, TX. pp.605-616.
  • Galal A, Atta NF, Mark HB, Bishop PL. 1996. Conducting Polymers-Based Chemical Sensors. In: Proceedings of the First International Conference on Electrochemistry and Its Applications. Luxor, Egypt.
  • Gibbs JT, Bishop PL. 1996. A Method for Describing Biofilm Surface Roughness Using Geostatistical Techniques. In: Biofilm Structure, Growth and Dynamics. Elsevier Science, New York, NY.
  • Kudlich M, Knackmuss HJ, Stolz A, Bishop PL. 1996. Simultaneous anaerobic and aerobic degradation of the sulfonated azo dye Mordant Yellow 3 by immobilized Cells from a naphthalenesulfonate-degrading mixed culture. Appl Microbiol Biotechnol 46(5-6):597-603.
  • Kudlich M, Knackmuss HJ, Stolz A, Bishop PL. 1996. Synchronous anaerobic and aerobic degradation of the sulfonated azo dye Mordant Yellow 3 by immobilized cells from a naphthalenesulfonate-degrading mixed culture. Appl Microbiol Biotechnol 46:597-603.
  • Palisdottir G, Bishop PL. 1996. Effect of Snail Predation on Nitrifying Biofilms. In: Proceedings of the ASM (American Society for Microbiology) Conference on Microbial Biofilms. Snowbird, UT.
  • Tepper A, Coughlin MF, Bishop PL, Kinkle BK. 1996. Incorporating Aerobic Azo Dye Degraders into Biofilm Systems While Maintaining Planktonic Phenotypes. In: Proceedings of the ASM (American Society for Microbiology) Conference on Microbial Biofilms. Snowbird, UT.
  • Yu T, Bishop PL. 1996. Fabrication and Evaluation of Six Different Microelectrodes for Biofilm Research. In: Proceedings of the ASM (American Society for Microbiology) Conference on Microbial Biofilms. Snowbird, UT.
  • Zhang TC, Bishop PL. 1996. Evaluation of Microelectrode Performance and Applicability in Biofilm Systems. In: Proceedings of the Water Environment Federation WEFTEC (The Water Environment Federation's Technical Exhibition and Conference) '96. Dallas, TX. pp.579-590.
  • Zhang TC, Bishop PL. 1996. Evaluation of substrate and pH effects in a nitrifying biofilm. Water Environ Res 68:1107-1115.

1995

  • Bishop PL, Rittman B. 1995. Modeling heterogeneity in biofilms. Water Sci Technol 32(8):263-265.
  • Bishop PL, Zhang TC, Fu YC. 1995. Effect of biofilm structure, microbial distributions and mass transport on biodegradation processes. Water Sci Technol 31(1):143-152.
  • Bishop PL, Zhang TC, Fu YC. 1995. Effect of biofilm structure, microbial distributions, and mass transport on biodegradation processes. In: Biological Degradation of Organic Chemical Pollutants in Biofilm Systems. Elsevier Science, Tarrytown, NY.
  • Fitzgerald S, Bishop PL. 1995. Two stage anaerobic/aerobic treatment of sulfonated azo dyes. J Environ Sci Health A Tox Hazard Subst Environ Eng 30:1251-1276. doi:10.1080/10934529509376264
  • Fu YC, Bishop PL. 1995. The evaluation of respiration rate in fixed-film systems under various organic loading rates. Water Environ Res 67:1036-1043.
  • Gibbs JT, Bishop PL. 1995. A Method for Describing Biofilm Surface Roughness Using Geostatistical Techniques. In: Proceedings of the Conference on Biofilm Structure, Growth and Dynamics. Noordwijkerhout, Netherlands. pp.102-109.
  • Gibbs JT, Bishop PL. 1995. A method for describing biofilm surface roughness using geostatistical techniques. Water Sci Technol 32(8):91-98. doi:10.1016/0273-1223(96)00012-1
  • Ma Y, Galal A, Lunsford S, Zimmer H, Mark HB, Huang Z, Bishop PL. 1995. Poly(binaphthyl-20-crown-6) as receptor based molecular selective potentiometric electrodes for catecholamines and 1,2-dihydroxybenzene derivatives. Biosens Bioelectron 10:705-715. PMID:7576438
  • Willis H, Bishop PL. 1995. Solids retention time and biofilm detachment in fixed film biological reactors. Ohio Buckeye Bulletin 69(2):24-29.
  • Zhang TC, Fu YC, Bishop PL. 1995. Competition for substrate and space in biofilms. Water Environ Res 67:992-1003.
  • Zhang TC, Fu YC, Bishop PL, Kupferle MJ, Fitzgerald S, Jiang HH, Harmer C. 1995. Transport and biodegradation of toxic organics in biofilms. J Hazard Mater 41(2-3):267-285.

1992

  • Johnson BF, Malick RE, Ghearing B, Dorsey JG. 1992. Micellar catalysis in flow injection systems: the nitrosation reaction. Analyst 117(12):1833-1837. PMID:1285574
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