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National Institute of Environmental Health Sciences

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Your Environment. Your Health.

Datasets: University of California-Berkeley

Superfund Research Program

Meta-Omics of Microbial Communities Involved in Bioremediation

Project Leader: Lisa Alvarez-Cohen
Grant Number: P42ES004705
Funding Period: 2000-2017
View this project in the NIH Research Portfolio Online Reporting Tools (RePORT)

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Datasets

Total number of records: 11

Dataset Title Data Types Data Repository
Characterization of four TCE-dechlorinating microbial enrichments grown with different cobalamin stress and methanogenic conditions Gene Expression Gene Expression Omnibus (GEO)
Comparative Genomics of D. ethenogenes 195 and an Unsequenced Dehalococcoides-Containing Enrichment Culture Gene Expression Gene Expression Omnibus (GEO)
Corrinoid salvaging and remodeling by Dehalococcoides mccartyi strain 195 in a defined consortium containing a corrinoid-producer Pelosinus fermentans strain R7 Gene Expression Gene Expression Omnibus (GEO)
Dehalococcoides ethenogenes strain 195 1.6K Gene Expression Gene Expression Omnibus (GEO)
Development of a Fluorescence-Activated Cell Sorting Method Coupled with Whole Genome Amplification To Analyze Minority and Trace Dehalococcoides Genomes in Microbial Communities Gene Expression Gene Expression Omnibus (GEO)
Isolation of two new Dehalococcoides mccartyi strains with dissimilar dechlorination functions and their characterization by comparative genomics via microarray analysis Gene Expression Gene Expression Omnibus (GEO)
Pseudonocardia dioxanivorans strain CB1190 during growth on THF or succinate Gene Expression Gene Expression Omnibus (GEO)
Pseudonocardia dioxanivorans strain CB1190 during growth with H2/bicarbonate or pyruvate Gene Expression Gene Expression Omnibus (GEO)
Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and proteomic analysis Gene Expression Gene Expression Omnibus (GEO)
Temporal microarray analysis of Dehalococcoides ethenogenes during the transition into the stationary phase Gene Expression Gene Expression Omnibus (GEO)
The design and validation of a Dehalococcoides genus microarray and its application to two newly isolated Dehalococcoides strains for comparative genomics Gene Expression Gene Expression Omnibus (GEO)

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