Superfund Research Program

Transport, Transformation, and Remediation of Contaminants in the Environment

Project Leader: Kate M. Scow
Grant Number: P42ES004699
Funding Period: 1995-2015

Project-Specific Links

Publications

2017

• Moschet C, Lew BM, Hasenbein S, Anumol T, Young TM. 2017. LC- and GC-QTOF-MS as complementary tools for a comprehensive micropollutant analysis in aquatic systems. Environ Sci Technol 51(3):1553-1561. doi:10.1021/acs.est.6b05352 PMID:28026950
• Wang D, Fonte SJ, Parikh SJ, Six J, Scow KM. 2017. Biochar additions can enhance soil structure and the physical stabilization of C in aggregates. Geoderma 303:110-117. doi:10.1016/j.geoderma.2017.05.027 PMID:29109589 PMCID:PMC5669273

2016

• Bair DA, Mukome FN, Popova IA, Ogunyoku TA, Jefferson A, Wang D, Hafner SC, Young TM, Parikh SJ. 2016. Sorption of pharmaceuticals, heavy metals, and herbicides to biochar in the presence of biosolids. J Environ Qual 45(6):1998-2006. doi:10.2134/jeq2016.03.0106 PMID:27898796
• Fogg GE, Zhang Y. 2016. Debates-Stochastic subsurface hydrology from theory to practice: A geologic perspective. Water Resour Res 52:9235-9245. doi:10.1002/2016wr019699
• Geisseler D, Lazicki PA, Scow KM. 2016. Mineral nitrogen input decreases microbial biomass in soils under grasslands but not annual crops. Applied Soil Ecology 106:1-10. doi:10.1016/j.apsoil.2016.04.015
• Joshi G, Schmidt R, Denison MS, Hristova KR. 2016. Effect of benzene and ethylbenzene on the transcription of methyl-tert-butyl ether degradation genes of Methylibium petroleiphilum PM1. Microbiology 162(9):1563-1571. doi:10.1099/mic.0.000338 PMID:27450417 PMCID:PMC4459789
• Parry E, Young TM. 2016. Comparing targeted and non-targeted high-resolution mass spectrometric approaches for assessing advanced oxidation reactor performance. Water Res 104:72-81. doi:10.1016/j.watres.2016.07.056 PMID:27518144

2015

• Ding Y, Li J, Xiao W, Xiao K, Lee JK, Bhardwaj U, Zhu Z, Digiglio P, Yang G, Lam KS, Pan T. 2015. Microfluidic-enabled print-to-screen platform for high-throughput screening of combinatorial chemotherapy. Anal Chem 87(20):10166-10171. doi:10.1021/acs.analchem.5b00826 PMID:26334956
• Joshi G, Schmidt R, Scow KM, Denison MS, Hristova KR. 2015. Gene mdpC plays a regulatory role in the methyl-tert-butyl ether degradation pathway of Methylibium petroleiphilum strain PM1. FEMS Microbiol Lett 362(7):doi:10.1093/femsle/fnv029 PMID:25724531 PMCID:PMC4459789
• Wang D, Mukome FN, Yan D, Wang H, Scow KM, Parikh SJ. 2015. Phenylurea herbicide sorption to biochars and agricultural soil. J Environ Sci Health B 50(8):544-551. doi:10.1080/03601234.2015.1028830 PMID:26065514 PMCID:PMC4838459

2014

• Geisseler D, Scow KM. 2014. Long-term effects of mineral fertilizers on soil microorganisms - a review. Soil Biol Biochem 75:54-63. doi:10.1016/j.soilbio.2014.03.023
• Hicks K, Schmidt R, Nickelsen MG, Boyle SL, Baker JM, Tornatore PM, Hristova KR, Scow KM. 2014. Successful treatment of an MTBE-impacted aquifer using a bioreactor self-colonized by native aquifer bacteria. Biodegradation 25(1):41-53. doi:10.1007/s10532-013-9639-0 PMID:23613160 PMCID:PMC3950410
• McCallum JL, Engdahl NB, Ginn TR, Cook PG. 2014. Nonparametric estimation of groundwater residence time distributions: What can environmental tracer data tell us about groundwater residence time?. Water Resour Res 50:2022-2038. doi:10.1002/2013wr014974
• Mukome FN, Kilcoyne AL, Parikh SJ. 2014. Alteration of biochar carbon chemistry during soil incubations: SR-FTIR and NEXAFS investigation. Soil Science Society of America Journal 78(5):1632-1640. doi:10.2136/sssaj2014.05.0206
• Ogunyoku TA, Young TM. 2014. Removal of triclocarban and triclosan during municipal biosolid production. Water Environ Res 86(3):197-203. PMID:24734467 PMCID:PMC3989550

2013

• Engdahl NB, Ginn TR, Fogg GE. 2013. Scalar dissipation rates in non-conservative transport systems. J Contam Hydrol 149:46-60. doi:10.1016/j.jconhyd.2013.03.003 PMID:23584457 PMCID:PMC4065795
• Engdahl NB, Ginn TR, Fogg GE. 2013. Using groundwater age distributions to estimate the effective parameters on Fickian and non-Fickian models of solute transport. Adv Water Resour 54:11-21. doi:10.1016/j.advwatres.2012.12.008 PMID:25821342 PMCID:PMC4375553
• Gold EB, Blount BC, Rasor MO, Lee JS, Alwis U, Srivastav A, Kim K. 2013. Thyroid hormones and thyroid disease in relation to perchlorate dose and residence near a Superfund site. J Expo Sci Environ Epidemiol 23:399-408. doi:10.1038/jes.2012.90 PMID:22968349 PMCID:PMC3907373
• Jorgenson BC, Fleishman E, Macneale KH, Schlenk D, Scholz N, Spromberg JA, Werner I, Weston DP, Xiao Q, Young TM, Zhang M. 2013. Predicted transport of pyrethroid insecticides from an urban landscape to surface water. Environ Toxicol Chem 32(11):2469-2477. doi:10.1002/etc.2352 PMID:24115122 PMCID:PMC3949623
• Jung J, Choi S, Jung H, Scow KM, Park W. 2013. Primers for amplification of nitrous oxide reductase genes associated with Firmicutes and Bacteroidetes in organic-compound-rich soils. Microbiology 159(Pt2):307-315. doi:10.1099/mic.0.060194-0 PMID:23197174 PMCID:PMC3709563
• Kim D, Young TM, Anastasio C. 2013. Phototransformation rate constants of PAHs associated with soot particles. Sci Total Environ 443:896-903. doi:10.1016/j.scitotenv.2012.11.055 PMID:23247292 PMCID:PMC3566770
• McKenzie ER, Young TM. 2013. A novel fractionation approach for water constituents- Distribution of storm even metals. Environ Sci Process Impacts 15(5):1006-1016. doi:10.1039/c3em30612g PMID:23535891 PMCID:PMC3943471
• McKenzie ER, Young TM. 2013. Quality control considerations for size exclusion chromatography with online ICP-MS: a powerful tool for evaluating the size dependence of metal-organic matter complexation. Water Sci Technol 67(5):1075-1082. doi:10.2166/wst.2013.659 PMID:23416600 PMCID:PMC3577094
• Mukome FN, Zhang X, Silva LC, Six J, Parikh SJ. 2013. Use of chemical and physical characteristics to investigate trends in biochar feedstocks. J Agric Food Chem 61(9):2196-2204. doi:10.1021/jf3049142 PMID:23343098 PMCID:PMC4154706
• Park I, Zhang N, Ogunyoku TA, Young TM, Scow KM. 2013. Effects of Triclosan and biosolids on microbial community composition in an agricultural soil. Water Environ Res 85:2237-2242(6). doi:10.2175/106143012X13560205144335 PMID:24597039 PMCID:PMC3951728
• Parry E, Young TM. 2013. Distribution of pyrethroid insecticides in secondary wastewater effluent. Environ Toxicol Chem 32(12):2686-2694. doi:10.1002/etc.2347 PMID:23939863 PMCID:PMC3941031
• Rasa E, Bekins BA, Mackay DM, De Sieyes NR, Wilson JT, Feris KP, Wood IA, Scow KM. 2013. Impacts of an ethanol-blended fuel release on groundwater and fate of produced methane: simulation of field observations. Water Resour Res 49(8):4907-4926. doi:10.1002/wrcr.20382 PMID:24678130 PMCID:PMC3962844
• Rasa E, Foglia L, Mackay DM, Scow KM. 2013. Effect of different transport observations on inverse modeling results: Case study of a long-term groundwater tracer test monitored at high resolution. Hydrogeology Journal 21(7):1539-1554. doi:10.1007/s10040-013-1026-8 PMID:24672283 PMCID:PMC3963389

2012

• Engdahl NB, Ginn TR, Fogg GE. 2012. Non-Fickian dispersion of groundwater age. Water Resour Res 48(7):13PP. doi:10.1029/2012wr012251 PMID:24976651 PMCID:PMC4070610
• Jorgenson BC, Wissel-Tyson C, Young TM. 2012. Factors contributing to the off-target transport of pyrethroid insecticides from urban surfaces. J Agric Food Chem 60(30):7333-7340. doi:10.1021/jf301241n PMID:22784034 PMCID:PMC3646940
• Mackay DM, Einarson MD, Kaiser PM, Nozawa-Inoue M, Goyal S, Chakraborty I, Rasa E, Scow KM. 2012. Mass discharge in a tracer plume: evaluation of the Theissen Polygon method. Ground Water 50(6):895-907. doi:10.1111/j.1745-6584.2012.00912.x PMID:22324777 PMCID:PMC3862899
• North KP, Mackay DM, Kayne JS, Petersen D, Rasa E, Rastegarzadeh L, Holland RB, Scow KM. 2012. In situ biotreatment of TBA with recirculation/oxygenation. Ground Water Monit Remediat 32(3):52-62. doi:10.1111/j.1745-6592.2011.01390.x PMID:23358537 PMCID:PMC3555562
• Schmidt R, Klemme DA, Scow KM, Hristova KR. 2012. Microbial biosafety of pilot-scale bioreactor treating MTBE and TBA-contaminated drinking water supply. J Hazard Mater 209:524-528. doi:10.1016/j.jhazmat.2012.01.057 PMID:22321859 PMCID:PMC3327512

2011

• Kong AY, Scow KM, Cordova-Kreylos AL, Holmes WE, Six J. 2011. Microbial community composition and carbon cycling within soil microenvironments of conventional, low-input, and organic cropping systems. Soil Biol Biochem 43(1):20-30. doi:10.1016/j.soilbio.2010.09.005 PMID:22267876 PMCID:PMC3260532
• Nozawa-Inoue M, Jien M, Yang K, Rolston DE, Hristova KR, Scow KM. 2011. Effect of nitrate, acetate, and hydrogen on native perchlorate-reducing microbial communities and their activity in vadose soil. FEMS Microbiol Ecol 76:278-288. doi:10.1111/j.1574-6941.2011.01045.x PMID:21284679 PMCID:PMC3086929
• Rasa E, Chapman SW, Bekins BA, Fogg GE, Scow KM, Mackay DM. 2011. Role of back diffusion and biodegradation reactions in sustaining an MTBE/TBA plume in alluvial media. J Contam Hydrol 126:235-247. doi:10.1016/j.jconhyd.2011.08.006 PMID:22115089 PMCID:PMC3267905
• Warneke S, Schipper LA, Matiasek MG, Scow KM, Cameron S, Bruesewitz DA, McDonald IR. 2011. Nitrate removal, communities of denitrifiers and adverse effects in different carbon substrates for use in denitrification beds. Water Res 45:5463-5475. doi:10.1016/j.watres.2011.08.007 PMID:21880343 PMCID:PMC3270496
• Yang J, Rasa E, Tantayotai P, Scow KM, Yuan H, Hristova KR. 2011. Mathematical model of Chlorella minutissima UTEX2341 growth and lipid production under photoheterotrophic fermentation conditions. Bioresour Technol 102(3):3077-3082. doi:10.1016/j.biortech.2010.10.049 PMID:21115343 PMCID:PMC3267903

2010

• Buchholz BA, Zermeno P, Hwang H, Guilderson TP, Young TM. 2010. Measuring submicron-size fractionated particulate matter on aluminum impactor disks. Radiocarbon 52(2):278-285. PMID:22228915 PMCID:PMC3252030
• Drenovsky RE, Steenwerth KL, Jackson LE, Scow KM. 2010. Land use and climatic factors structure regional patterns in soil microbial communities. Global Ecology and Biogeography 19(1):27-39. doi:10.1111/j.1466-8238.2009.00486.x PMID:24443643 PMCID:PMC3891896
• Faria IR, Young TM. 2010. Comparing linear free energy relationships for organic chemicals in soils: effects of soil and solute properties. Environ Sci Technol 44(18):6971-6977. doi:10.1021/es100440a PMID:20726509 PMCID:PMC2941804
• Faria IR, Young TM. 2010. Modeling and predicting competitive sorption of organic compounds in soil. Environ Toxicol Chem 29(12):2676-2684. doi:10.1002/etc.343 PMID:21061392 PMCID:PMC3040038
• Giudice BD, Young TM. 2010. The antimicrobial triclocarban stimulates embryo production in the freshwater mudsnail Potamopyrgus antipodarum. Environ Toxicol Chem 29(4):966-970. doi:10.1002/etc.105 PMID:20821527 PMCID:PMC3040035
• Jorgenson BC, Young TM. 2010. Formulation effects and the off-target transport of pyrethroid insecticides from urban hard surfaces. Environ Sci Technol 44(13):4951-4957. doi:10.1021/es100094f PMID:20524665 PMCID:PMC2927978
• Kong AY, Hristova KR, Scow KM, Six J. 2010. Impacts of different N management regimes on nitrifier and denitrifier communities and N cycling in soil microenvironments. Soil Biol Biochem 42(9):1523-1533. doi:10.1016/j.soilbio.2010.05.021 PMID:21339865 PMCID:PMC3040239
• Kristensen AH, Henriksen K, Mortensen L, Scow KM, Moldrup P. 2010. Soil physical constraints on intrinsic biodegradation of petroleum vapors in a layered subsurface. Vadose Zone Journal 9(1):137-147. doi:10.2136/vzj2009.0010 PMID:21617737 PMCID:PMC3100517
• Son A, Kennedy IM, Scow KM, Hristova KR. 2010. Quantitative gene monitoring of microbial tetracycline resistance using magnetic luminescent nanoparticles. J Environ Monit 12:1362-1367. doi:10.1039/c001974g PMID:20424797 PMCID:PMC3267904

2009

• Chen W, Young TM. 2009. Influence of nitrogen source on NDMA formation during chlorination of diuron. Water Res 43(12):3047-3056. doi:10.1016/j.watres.2009.04.020 PMID:19457535 PMCID:PMC2701387
• Dong L, Cordova-Kreylos AL, Yang J, Yuan H, Scow KM. 2009. Humic acids buffer the effects of urea on soil ammonia oxidizers and potential nitrification. Soil Biol Biochem 41(8):1612-1621. doi:10.1016/j.soilbio.2009.04.023 PMID:22267875 PMCID:PMC3260537
• Kanematsu M, Hayashi A, Denison MS, Young TM. 2009. Characterization and potential environmental risks of leachate from shredded rubber mulches. Chemosphere 76(7):952-958. doi:10.1016/j.chemosphere.2009.04.026 PMID:19450864 PMCID:PMC2735888
• Kim D, Kumfer BM, Anastasio C, Kennedy IM, Young TM. 2009. Environmental aging of polycyclic aromatic hydrocarbons on soot and its effect on source identification. Chemosphere 76(8):1075-1081. doi:10.1016/j.chemosphere.2009.04.031 PMID:19443013 PMCID:PMC2754578
• McKenzie ER, Money JE, Green PG, Young TM. 2009. Metals associated with stormwater-relevant brake and tire samples. Sci Total Environ 407(22):5855-5860. doi:10.1016/j.scitotenv.2009.07.018 PMID:19709720 PMCID:PMC2776691
• Zornoza R, Guerrero C, Mataix-Solera J, Scow KM, Arcenegui V, Mataix-Beneyto J. 2009. Changes in soil microbial community structure following the abandonment of agricultural terraces in mountainous areas of Eastern Spain. Applied Soil Ecology 42(3):315-323. doi:10.1016/j.apsoil.2009.05.011 PMID:22291451 PMCID:PMC3267902

2008

• Nozawa-Inoue M, Jien M, Hamilton NS, Stewart V, Scow KM, Hristova KR. 2008. Quantitative detection of perchlorate-reducing bacteria by real-time PCR targeting the perchlorate reductase gene. Appl Environ Microbiol 74(6):1941-1944. doi:10.1128/AEM.01658-07 PMID:18245250 PMCID:PMC2268300

2007

• Cavagnaro TR, Jackson LE, Scow KM, Hristova KR. 2007. Effects of arbuscular mycorrhizas on ammonia oxidizing bacteria in an organic farm soil. Microb Ecol 54(4):618-626. doi:10.1007/s00248-007-9212-7 PMID:17955326
• Hristova KR, Schmidt R, Chakicherla AY, Legler TC, Wu J, Chain PS, Scow KM, Kane SR. 2007. Comparative transcriptome analysis of Methylibium petroleiphilum PM1 exposed to the fuel oxygenates methyl tert-butyl ether and ethanol. Appl Environ Microbiol 73(22):7347-7357. doi:10.1128/AEM.01604-07 PMID:17890343 PMCID:PMC2168209
• Kane SR, Chakicherla AY, Chain PS, Schmidt R, Shin MW, Legler TC, Scow KM, Larimer FW, Lucas SM, Richardson PM, Hristova KR. 2007. Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1. J Bacteriol 189(5):1931-1945. doi:10.1128/JB.01259-06 PMID:17158667 PMCID:PMC1855728
• Mackay DM, De Sieyes NR, Einarson MD, Feris KP, Pappas AA, Wood IA, Jacobson L, Justice LG, Noske MN, Wilson JY, Adair C, Scow KM. 2007. Impact of ethanol on the natural attenuation of MTBE in a normally sulfate-reducing aquifer. Environ Sci Technol 41(6):2015-2021. PMID:17410799
• Resurreccion AC, Kawamoto K, Komatsu T, Moldrup P, Ozaki N, Rolston DE. 2007. Gas transport parameters along field transects of a volcanic ash soil. Soil Science 172(1):3-16.
• Son A, Dosev D, Nichkova MJ, Ma Z, Kennedy IM, Scow KM, Hristova KR. 2007. Quantitative DMA hybridization in solution using magnetic/luminescent core-shell nanoparticles. Anal Biochem 370:186-194. PMID:17869209

2006

• Cordova-Kreylos AL, Cao Y, Green PG, Hwang H, Kuivila KM, LaMontagne MG, Van De Werfhorst L, Holden PA, Scow KM. 2006. Diversity, composition, and geographical distribution of microbial communities in California salt marsh sediments. Appl Environ Microbiol 72(5):3357-3366. PMID:16672478
• Fogg GE, LaBolle EM. 2006. Motivation of synthesis, with an example on groundwater quality sustainability. Water Resour Res 42(3):W03S05.
• Huang X, Massoudieh A, Young TM. 2006. Measured and predicted herbicide removal by mulch. J Environ Eng (New York) 132(8):918-925.
• LaBolle EM, Fogg GE, Eweis JB. 2006. The Diffusive fractionation of 3H and 3He in groundwater and its impact on groundwater age estimates. Water Resour Res 42(7):W07202.
• Mackay DM, De Sieyes NR, Einarson MD, Feris KP, Pappas AA, Wood IA, Jacobson L, Justice LG, Noske MN, Scow KM, Wilson JT. 2006. Impact of ethanol on the natural attenuation of benzene, toluene, and o-xylene in a normally sulfate-reducing aquifer. Environ Sci Technol 40(19):6123-6130. PMID:17051810
• Nakatsu CH, Hristova KR, Hanada S, Meng X, Hanson JR, Scow KM, Kamagata Y. 2006. Methylobium petroleophilum PM1 gen. nov., sp. nov., a new methyl tert-butyl ether (MTBE) degrading methylotroph belonging to the beta-subclass of the Proteobacteria. Int J Syst Evol Microbiol 56(5):983-989.

2005

• Degrood SH, Claassen VP, Scow KM. 2005. Microbial community composition on native and drastically disturbed serpentine soils. Soil Biol Biochem 37(8):1427-1435.
• Huang X, Fong S, Deanovic LA, Young TM. 2005. Toxicity of herbicides in highway runoff. Environ Toxicol Chem 24(9):2336-2340. PMID:16193763
• Ju D, Young TM. 2005. The influence of natural organic matter rigidity on the sorption, desorption, and competitive displacement rates of 1,2-dichlorobenzene. Environ Sci Technol 39(20):7956-7963. PMID:16295861
• Ju D, Young TM. 2005. The influence of the rigidity of geosorbent organic matter on non-ideal sorption behaviors of chlorinated benzenes. Water Res 39(12):2599-2610. PMID:15967474
• Massoudieh A, Huang X, Young TM, Marino MA. 2005. Modeling fate and transport of roadside-applied herbicides. J Environ Eng (New York) 131(7):1057-1067.
• Moore AM, Young TM. 2005. Chloride interactions with iron surfaces: implications for perchlorate and nitrate remediation using permeable reactive barriers. J Environ Eng (New York) 131(6):924-933.
• Nozawa-Inoue M, Scow KM, Rolston DE. 2005. Reduction of perchlorate and nitrate by microbial communities in vadose soil. Appl Environ Microbiol 71(7):3928-3934. doi:10.1128/AEM.71.7.3928-3934.2005 PMID:16000806 PMCID:PMC1169015
• Smith AH, Hristova KR, Wood IA, Mackay DM, Lory E, Lorenzana D, Scow KM. 2005. Comparison of biostimulation versus bioaugmentation with bacterial strain PM1 for treatment of groundwater contaminated with methyl tertiary butyl ether (MTBE). Environ Health Perspect 113(3):317-322. PMID:15743721
• Watanabe N, Schwartz E, Scow KM, Young TM. 2005. Relating desorption and biodegradation of phenanthrene to SOM structure characterized by quantitative pyrolysis GC-MS. Environ Sci Technol 39(16):6170-6181. PMID:16173578

2004

• Drenovsky RE, Elliott GN, Graham KJ, Scow KM. 2004. Comparison of phospholipid fatty acid (PLFA) and total soil fatty acid methyl esters (TSFAME) for characterizing soil microbial communities. Soil Biol Biochem 36(11):1793-1800.
• Drenovsky RE, Vo D, Graham KJ, Scow KM. 2004. Soil water content and organic carbon availability are major determinants of soil microbial community composition. Microb Ecol 48(3):424-430. PMID:15692862
• Feris KP, Hristova KR, Gebreyesus B, Mackay DM, Scow KM. 2004. A shallow BTEX and MTBE contaminated aquifer supports a diverse microbial community. Microb Ecol 48(4):589-600. PMID:15696392
• Gamst J, Moldrup P, Rolston DE, Scow KM, Henriksen K, Komatsu T. 2004. Time-dependency of naphthalene sorption in soil: Simple rate-, diffusion-, and isotherm-parameter-based models. Soil Science 169(5):342-354.
• Huang X, Pedersen TL, Fischer M, White R, Young TM. 2004. Herbicide runoff along highways. 1. Field observations. Environ Sci Technol 38(12):3263-3271. PMID:15260322
• Huang X, Pedersen TL, Fischer M, White R, Young TM. 2004. Herbicide runoff along highways. 2. Sorption control. Environ Sci Technol 38(12):3272-3278. PMID:15260323
• Ju D, Young TM. 2004. Effects of competitor and natural organic matter characteristics on the equilibrium sorption of 1,2-dichlorobenzene in soil and shale. Environ Sci Technol 38(22):5863-5870. PMID:15573583
• Okano Y, Hristova KR, Leutenegger CM, Jackson LE, Denison RF, Gebreyesus B, Lebauer D, Scow KM. 2004. Application of real-time PCR to study effects of ammonium on population size of ammonia-oxidizing bacteria in soil. Appl Environ Microbiol 70(2):1008-1016. PMID:14766583
• Weissmann GS, Zhang Y, Fogg GE, Mount JF. 2004. Influence of incised-valley-fill deposits on hydrogeology of a stream-dominated alluvial fan. In: Aquifer Characterization, SEPM Special Publication No. 80. Society for Sedimentay Geology (SEPM), Tulsa, OK. pp.15-28.

2003

• Altevogt AS, Rolston DE, Venterea RT. 2003. Density and pressure effects on the transport of gas phase chemicals in unsaturated porous media. Water Resour Res 39(3):Art.No.1061.
• Altevogt AS, Rolston DE, Whitaker S. 2003. New equations for binary gas transport in porous media, Part 1: equation development. Adv Water Resour 26(7):695-715.
• Altevogt AS, Rolston DE, Whitaker S. 2003. New equations for binary gas transport in porous media, Part 2: experimental validation. Adv Water Resour 26(7):717-723.
• Basagaoglu H, Chung EE, Gandhi D, Scow KM, McCoy BJ, Ginn TR. 2003. Rate parameters for methyl tert-butyl ether biodegradation via a radial diffusion model. J Environ Eng (New York) 129(6):565-570.
• Gamst J, Moldrup P, Olesen T, Komatsu T. 2003. Comparison of naphthalene diffusion and nonequilibrium adsorption-desorption experiments. Soil Science Society of America Journal 67(3):765-777.
• Hristova KR, Gebreyesus B, Mackay DM. 2003. Naturally occurring bacteria similar to the methyl tert-butyl ether (MTBE)-degrading strain PM1 are present in MTBE-contaminated groundwater. Appl Environ Microbiol 69(5):2616-2623. PMID:12732529
• Moldrup P, Olesen T, Komatsu T, Yoshikawa S, Schjonning P, Rolston DE. 2003. Modeling diffusion and reaction in soils: X. A unifying model for solute and gas diffusivity in unsaturated soil. Soil Science 168(5):321-337.
• Moldrup P, Yoshikawa S, Olesen T, Komatsu T, Rolston DE. 2003. Air permeability in undisturbed volcanic ash soils: Predictive model test and soil structure fingerprint. Soil Science Society of America Journal 67:32-40.
• Moldrup P, Yoshikawa S, Olesen T, Komatsu T, Rolston DE. 2003. Gas diffusivity in undisturbed volcanic ash soils: Test of soil-water-characteristic based prediction models. Soil Science Society of America Journal 67:41-51.
• Moore AM, De Leon CH. 2003. Rate and extent of aqueous perchlorate removal by iron surfaces. Environ Sci Technol 37(14):3189-3198. PMID:12901669
• Tipton DK, Rolston DE, Scow KM. 2003. Transport and biodegradation of perchlorate in soils. J Environ Qual 32(1):40-46. PMID:12549540
• Stavnes SA, Hristova KR, Scow KM, Goetz J, Kemper MQ, Knutson K, Mahaffey WR, Slomczynski DJ, Feldhake DJ. 2003. Microbial Analysis of MTBE, BTEX Bioremediation: BionetsTM Containing PM1, SOS, Isolite Battelle Press, Columbus, OH.

2002

• Gamst J, Hesselsoe M, Olesen T, Roslev P, Rolston DE, Moldrup P, Henriksen K. 2002. Quantificatin of ¹⁴C-labeled hydrophoic organic compounds in soil samples by a scintillation fluid extraction method. Soil Science 167(1):25-34.
• Gray JR, Lacrampe-Couloume G, Gandhi D, Scow KM, Wilson RD, Mackay DM, Lollar BS. 2002. Carbon and hydrogen isotopic fractionation during biodegradation of methyl tert-butyl ether. Environ Sci Technol 36(9):1931-1938. PMID:12026973
• Macalady JL, McMillan AM, Dickens AF, Tyler SC, Scow KM. 2002. Population dynamics of type I and II methanotrophic bacteria in rice soils. Environ Microbiol 4(3):148-157. PMID:12000315
• Reichman R, Rolston DE. 2002. Design and performance of a dynamic gas flux chamber. J Environ Qual 31(6):1774-1781. PMID:12469825
• Weissmann GS, Mount JF, Fogg GE. 2002. Glacially driven cycles in accumulation space and sequence stratigraphy of a stream-dominated alluvial fan, San Joaquin Valley, California, U.S.A. Journal of Sedimentary Research 72(2):240-251. doi:10.1306/062201720240
• Weissmann GS, Yong Z, LaBolle EM, Fogg GE. 2002. Dispersion of groundwater age in an alluvial aquifer system. Water Resour Res 38(10):16.1-16.8.
• Wilson RD, Mackay DM, Scow KM. 2002. In situ MTBE biodegradation supported by diffusive oxygen release. Environ Sci Technol 36(2):190-199. PMID:11827053

2001

• Bruns MA, Hanson JR, Mefford J, Scow KM. 2001. Isolate PM1 populations are dominant and novel methyl tert-butyl ether-degrading bacterial in compost biofilter enrichments. Environ Microbiol 3(3):220-225. PMID:11321538
• Deeb RA, Hu H, Hanson JR, Scow KM, Alvarez-Cohen L. 2001. Substrate interactions in BTEX and MTBE mixtures by an MTBE-degrading isolate. Environ Sci Technol 35(2):312-317. PMID:11347603
• Gamst J, Olesen T, De Jonge H, Moldrup P, Rolston DE. 2001. Nonsingularity of naphthalene sorption in soil: observations and the two-compartment model. Soil Science Society of America Journal 65(6):1622-1633.
• Hristova KR, Lutenegger CM, Scow KM. 2001. Detection and quantification of methyl tert-butyl ether-degrading strain PM1 by real-time TaqMan PCR. Appl Environ Microbiol 67(11):5154-5160. PMID:11679339
• Jackman AP, Kennedy VC, Bhatia N. 2001. Interparticle migration of metal cations in stream sediments as a factor in toxics transport. J Hazard Mater 82(1):27-41. PMID:11165059
• LaBolle EM, Fogg GE. 2001. Role of molecular diffusion in contaminant migration and recovery in an alluvial aquifer system. Transp Porous Media 42(1-2):155-179. doi:10.1023/A:1006772716244
• Moldrup P, Olesen T, Komatsu T, Schjonning P, Rolston DE. 2001. Tortuosity, diffusivity, and permeability in the soil liquid and gaseous phases. Soil Science Society of America Journal 65(3):613-623.
• Olesen T, Gamst J, Moldrup P, Komatsu T, Rolston DE. 2001. Diffusion of sorbing organic chemicals in the liquid and gaseous phases of repacked soil. Soil Science Society of America Journal 65:1585-1593.
• Olesen T, Moldrup P, Yamaguchi T, Rolston DE. 2001. Constant slope impedance factor model for predicting the solute diffusion coefficient in unsaturated soil. Soil Science 166(2):89-96.
• Schwartz E, Scow KM. 2001. Repeated inoculation as a strategy for the remediation of low concentrations of phenanthrene in soil. Biodegradation 12(3):201-207. PMID:11826901
• Werner I, Koger CS, Hamm JT, Hinton DE. 2001. Ontogeny of the heat shock protein, hsp70 and hsp60, response and developmental effects of heat-shock in the teleost, Medaka (Oryzias latipes). Environ Sci (Ruse) 8:013-029.

2000

• Chen D, Rolston DE. 2000. Coupling diazinon volatilization and water evaporation in unsaturated soils: II. Diazinon transport. Soil Science 165(9):690-698.
• Chen D, Rolston DE, Moldrup P. 2000. Coupling diazinon volatilization and water evaporation in unsaturated soils: I. Water transport. Soil Science 165(9):681-689.
• Chen D, Rolston DE, Yamaguchi T. 2000. Calculating partition coefficients of organic vapors in unsaturated soil and clays. Soil Science 165(3):217-225.
• Deeb RA, Scow KM, Alvarez-Cohen L. 2000. Aerobic MTBE biodegradation: an examination of past studies, current challenges and future research directions. Biodegradation 11(2-3):171-186. PMID:11440243
• El-Farhan YH, Scow KM, Fan S, Rolston DE. 2000. Kinetics of trichloroethylene cometabolism and toluene biodegradation: Model application to soil batch experiments. J Environ Qual 29:778-786.
• Green CT, Scow KM. 2000. Analysis of phospholipid fatty acids (PLFA) to characterize microbial communities in aquifers. Hydrogeology Journal 8(1):126-141.
• LaBolle EM, Quastel J, Fogg GE, Gravner J. 2000. Diffusion processes in composite porous media and their numerical integration by random walks: Generalized stochastic differential equations with discontinuous coefficients. Water Resour Res 36(3):651-662.
• Macalady JL, Mack EE, Nelson DC, Scow KM. 2000. Sediment microbial community structure and mercury methylation in mercury-polluted Clear Lake, California. Appl Environ Microbiol 66(4):1479-1488. PMID:10742230
• Moldrup P, Olesen T, Gamst J, Schjonning P, Yamaguchi T, Rolston DE. 2000. Predicting the gas diffusion coefficient in repacked soil: Water-induced linear reduction model. Soil Science Society of America Journal 64(5):1588-1594.
• Moldrup P, Schjonning P, Yamaguchi T, Rolston DE. 2000. Predicting the gas diffusion coefficient in undisturbed soil from soil water characteristics. Soil Science Society of America Journal 64:94-100.
• Olesen T, Moldrup P, Yamaguchi T, Nissen HH, Rolston DE. 2000. Modified half-cell method for measuring the solute diffusion coefficient in undisturbed, unsaturated soil. Soil Science 165(11):835-840.
• Schwartz E, Trinh SV, Scow KM. 2000. Measuring growth of a phenanthrene-degrading bacterial inoculum in soil with a quantitative competitive polymerase chain reaction method. FEMS Microbiol Ecol 34(1):1-7. PMID:11053730

1999

• El-Farhan YH, Rolston DE, Scow KM. 1999. Coupling vapor transport and transformation of volatile organic chemicals. In: Vadose Zone Hydrology; Cutting Across Disciplines. Oxford University Press, New York, NY. pp.235-259.
• Hanson JR, Ackerman CE, Scow KM. 1999. Biodegradation of methyl tert-butyl ether by a bacterial pure culture. Appl Environ Microbiol 65(11):4788-4792. PMID:10543787 PMCID:PMC91645
• Hanson JR, Macalady JL, Harris D, Scow KM. 1999. Linking toluene degradation with specific microbial populations in soil. Appl Environ Microbiol 65(12):5403-5408. PMID:10583996 PMCID:PMC91736
• Johnson CR, Scow KM. 1999. Effect of nitrogen and phosphorus addition on phenanthrene biodegradation in four soils. Biodegradation 10(1):43-50. PMID:10423840
• Meneveau C, Cerutti S, O'Neill JP, Porte-Agel F, Parlange MB. 1999. Physics and modeling of small scale turbulence for large eddy simulation. Trends in Mathematics 2(1):221-231.
• Moldrup P, Olesen T, Yamaguchi T, Schjonning P, Rolston DE. 1999. Modeling diffusion and reaction in soils: IX. The Buckingham-Burdine-Campbell equation for gas diffusivity in undisturbed soil. Soil Science 164(8):542-551.
• Raihala TS, Wang Y, Jackman AP. 1999. Slow desorption of volatile organic compounds from soil: evidence of desorption step limitations. J Hazard Mater 65(3):247-265. PMID:10337401
• Schwartz E, Scow KM. 1999. Using biodegradation kinetics to measure the availability of aged phenanthrene to bacteria inoculated into soil. Environ Toxicol Chem 18:1742-1746.
• Weissmann GS, Carle SF, Fogg GE. 1999. Three-dimensional hydrofacies modeling based on soil surveys and transition probability geostatistics. Water Resour Res 35(6):1761-1770.
• Weissmann GS, Fogg GE. 1999. Multi-scale alluvial fan heterogeneity modeled with transition probability geostatistics in a sequence stratigraphic framework. Ground Water 226:48-65.

1998

• Cahill AT, Parlange MB. 1998. On water vapor transport in field soils. Water Resour Res 34(4):731-739.
• Carle SF, LaBolle EM, Weissmann GS, Van Brocklin D, Fogg GE. 1998. Conditional simulation of hydrofacies architecture: a transition probability/Markov approach. In: Concepts in Hydrogeology and Environmental Geology, No. 1. SEPM (Society for Sedimentary Geology) Special Publication. pp.147-170.
• du Plessis CA, Kinney KA, Schroeder ED, Chang DP, Scow KM. 1998. Denitrification and nitric oxide reduction in an aerobic toluene-treating biofilter. Biotechnol Bioeng 58(4):408-415. PMID:10099275
• El-Farhan YH, Scow KM, de Jonge LW, Rolston DE. 1998. Coupling transport and biodegradation of toluene and trichloroethylene in unsaturated soils. Water Resour Res 34(3):437-445.
• Fogg GE, Noyes CD, Carle SF. 1998. Geologically based model of heterogeneous hydraulic conductivity in an alluvial setting. Hydrogeology Journal 6(1):131-143.
• Macalady JL, Scow KM. 1998. Effects of fumigation with metam sodium on soil microbial activity and community structure. J Environ Qual 27(1):54-63.
• Parlange MB, Cahill AT, Nielsen DR, Hopmans JW, Wendroth O. 1998. Review of heat and water movement in field soils. Soil & Tillage Research 47(1-2):5-10.
• Porte-Agel F, Meneveau C, Parlange MB. 1998. Some basic properties of the surrogate subgrid-scale heat flux in the atmospheric boundary layer. Boundary-Layer Meteorology 88(4):425-444.
• Shih NR, McDonald KA, Girbes T, Iglesias R, Kohloff AJ, Jackman AP. 1998. Ribosome-inactivating proteins (RIPs) of wild Oregon cucumber (Marah oreganus). Biol Chem 379(6):721-725. PMID:9687022

1997

• Arocha MA, Jackman AP, McCoy BJ. 1997. Numerical analysis of sorption and diffusion in soil micropores, macropores, and organic matter. Computers & Chemical Engineering 21(5):489-499.
• Carle SF. 1997. Implementation schemes for avoiding artifact discontinuities in simulated annealing. Math Geol 29(2):231-244.
• Carle SF, Fogg GE. 1997. Modeling spatial variability with one and multidimensional continuous-lag Markov chains. Math Geol 29(7):891-918.
• Fuller ME, Scow KM. 1997. Impact of trichloroethylene and toluene on nitrogen cycling in soil. Appl Environ Microbiol 63(10):4015-4019. PMID:9327567
• Fuller ME, Scow KM. 1997. Lack of capsular exopolymer effects on the biodegradation of organic compounds by Pseudomonas sp strains JS1 and JS150. Microb Ecol 34(3):248-253. PMID:9337420
• Fuller ME, Scow KM, Lau S, Ferris H. 1997. Trichloroethylene (TCE) and toluene effects on the structure and function of the soil community. Soil Biol Biochem 29(1):75-89.
• Scow KM, Johnson CR. 1997. Effect of sorption on biodegradation of soil pollutants. Advances in Agronomy 58:1-56.
• Shih NR, McDonald KA, Jackman AP, Girbes T, Iglesias R. 1997. Bifunctional plant defence enzymes with chitinase and ribosome inactivating activities from Trichosanthes kirilowii cell cultures. Plant Science 130(2):145-150.

1996

• Albertson JD, Kiely G, Parlange MB. 1996. Surface fluxes of momentum, heat and water vapor, Chapter 3. In: Radiation and Water in the Climate System: Remote Measurements. Vol. I 45. Springer-Verlag & NATO Scientific Affairs Division, Berlin, Germany. pp.59-82.
• Amali S, Rolston DE, Yamaguchi T. 1996. Transient multicomponent gas-phase transport of volatile organic chemicals in porous media. J Environ Qual 25(5):1041-1047.
• Arocha MA, Jackman AP, McCoy BJ. 1996. Adsorption kinetics of toluene on soil agglomerates: Soil as a biporous sorbent. Environ Sci Technol 30(5):1500-1507.
• Carle SF, Fogg GE. 1996. Transition probability-based indicator geostatistics. Math Geol 28(4):453-476.
• Chu CR, Parlange MB, Katul GG, Albertson JD. 1996. Probability density functions of turbulent velocity and temperature in the atmospheric surface layer. Water Resour Res 32(6):1681-1688.
• El-Farhan YH, Petersen LW, Rolston DE, Glauz RD. 1996. Analytical solution for two-region diffusion with two well-mixed end chambers. Soil Science Society of America Journal 60(6):1697-1704.
• Ergas SJ, Veir J, Kinney KA. 1996. Control of dichloromethane emissions using biofiltration. J Environ Sci Health A Tox Hazard Subst Environ Eng A31(7):1741-1754. doi:10.1080/10934529609376453
• Fuller ME, Scow KM. 1996. Effects of toluene on microbially-mediated processes involved in the soil nitrogren cycle. Microb Ecol 32(2):171-184. PMID:8688007
• Govindaraju RS, Kavvas ML, Jones SE, Rolston DE. 1996. Use of Green-Ampt model for analyzing one-dimensional convective transport in unsaturated soils. Ground Water 178(1-4):337-350.
• Grismer ME, LaBolle EM, Raihala TS, Ewiss JB. 1996. A modified gravimetric method for measuring rates of adsorption and desorption on soil; kinetics of toluene adsorption/desorption on bentonite. Chapter STP 1261 in: Environmental Toxicology: Volatile Organic Compounds (VOCs) in the Environment. ASTM, Coshohocken, PA. pp.95.
• Kavvas ML, Govindaraju RS, Rolston DE, Jones SE. 1996. Stochastic modeling of contaminant transport in field-scale heterogeneous soils. In: Advances in Groundwater Pollution Control and Remediation. Kluwer Academic Publishers, Netherlands. pp.47-74.
• Kinney KA, Chang DP, Schroeder ED, Scow KM. 1996. Performance of a directionally-switching biofilter treating toluene contaminated air. In: Proceedings of the 89^th Annual Meeting & Exhibition, Air & Waste Management Association, 96-RP87C.05. Nashville, TN. pp.1-16.
• LaBolle EM, Fogg GE, Tompson AF. 1996. Random-walk simulation of transport in heterogeneous porous media: Local mass-conservation problem and implementation methods. Water Resour Res 32(3):583-593.
• Morgenroth E, Schroeder ED, Chang DP, Scow KM. 1996. Nutrient limitation in a compost biofilter degrading hexane. J Air Waste Manag Assoc 46(4):300-308. PMID:28079480
• Petersen LW, El-Farhan YH, Moldrup P, Rolston DE, Yamaguchi T. 1996. Transient diffusion, adsorption, and emission of volatile organic vapors in soils with fluctuating low water contents. J Environ Qual 25(5):1054-1063.
• Petersen LW, Moldrup P, Jacobsen OH, Rolston DE. 1996. Relations between specific surface area and soil physical and chemical properties. Soil Science 161(1):9-21. doi:10.1097/00010694-199601000-00003
• Wang Y, Raihala TS, Jackman AP, St. John R. 1996. Use of tedlar bags in VOC testing and storage: Evidence of significant VOC losses. Environ Sci Technol 30(10):3115-3117.

1995

• Albertson JD, Parlange MB, Katul GG, Chu CR, Stricker H, Tyler S. 1995. Sensible heat flux from arid regions: A simple flux-variance method. Water Resour Res 31(4):969-973.
• Busby RD, Lenhard RJ, Rolston DE. 1995. An investigation of saturation-capillary pressure relations in two- and three-fluid systems for several NAPLS in different porous media. Ground Water 33(4):570-578.
• Ergas SJ, Kinney KA, Fuller ME, Scow KM. 1995. Control of dichloromethane emissions using biofiltration. In: Control of dichloromethane emissions using biofiltration, I&EC Special Symposium, American Chemical Society. pp.1-6.
• Fuller ME, Mu DY, Scow KM. 1995. Biodegradation of trichloroethylene and toluene by indigenous microbial populations in vadose sediments. Microb Ecol 29(3):311-325. PMID:24185349
• Hoyle BL, Scow KM, Fogg GE, Darby JL. 1995. Effect of carbon:nitrogen ratio on kinetics of phenol biodegradation by Acinetobacter johnsonii in saturated sand. Biodegradation 6(4):283-293. PMID:8580643
• Katul GG, Chu CR, Parlange MB, Albertson JD, Ortenburger TA. 1995. Low-wavenumber spectral characteristics of velocity and temperature in the atmospheric surface layer. J Geophys Res Atmos 100(D7):14243-14255.
• Katul GG, Parlange MB. 1995. Analysis of land surface heat fluxes using the orthonormal wavelet approach. Water Resour Res 31(11):2743-2749.
• Katul GG, Parlange MB. 1995. The spatial structure of turbulence at production wavenumbers using orthonormal wavelets. Boundary-Layer Meteorology 75:81-108.
• Katul GG, Parlange MB, Albertson JD, Chu CR. 1995. Local isotropy and anisotropy in the sheared and heated atmospheric surface layer. Boundary-Layer Meteorology 72:123-148.
• Katul GG, Parlange MB, Albertson JD, Chu CR. 1995. The random sweeping decorrelation hypothesis in stratified turbulent flows. Fluid Dynamics Research 16:275-295.
• Parlange MB, Eichinger WE, Albertson JD. 1995. Regional scale evaporation and the atmospheric boundary layer. Reviews of Geophysics 33(1):99-124.
• Petersen LW, Moldrup P, El-Farhan YH, Jacobsen OH, Yamaguchi T, Rolston DE. 1995. The effect of moisture and soil texture on the adsorption of organic vapors. J Environ Qual 24(4):752-759. doi:10.2134/jeq1995.00472425002400040028x
• Scow KM. 1995. Effect of sorption on biodegradation of organic chemicals in soil. In: Effect of sorption on biodegradation of organic chemicals in soil. 15^th World Congress of Soil Science, International Society of Soil Science. pp.352-361.
• Scow KM, Fan S, Johnson CR, Ma GM. 1995. Biodegradation of sorbed chemicals in soil. Environ Health Perspect 103(Suppl.5):93-95. PMID:8565921