Superfund Research Program
Environmental, Microbial and Mammalian Biomolecular Responses to AhR Ligands
Center Director: Norbert E. Kaminski
Grant Number: P42ES004911
Funding Period: 1989-2027
Program Links
Publications
2024
- Filipovic D, Kana O, Marri D, Bhattacharya S. 2024. Unique challenges and best practices for single cell transcriptomic analysis in toxicology. Curr Opin Toxicol 38:doi:10.1016/j.cotox.2024.100475 PMID:38645720 PMCID:11027889
- Mu D, Scharer C, Kaminski NE, Zhang Q. 2024. A multiscale spatial modeling framework for the germinal center response. Front Immunol 15:doi:10.3389/fimmu.2024.1377303 PMID:38881901 PMCID:11179717
- Wang F, Xiang L, Sze-Yin Leung K, Elsner M, Zhang Y, Guo Y, Pan B, Sun H, An T, Ying G, Brooks BW, Hou D, Helbling DE, Sun J, Qiu H, Vogel T, Zhang W, Gao Y, Simpson M, Luo Y, Chang S, Su G, Wong B, Fu T, Zhu D, Jobst K, Ge C, Coulon F, Harindintwali J, Zeng X, Wang H, Fu Y, Wei Z, Lohmann R, Chen C, Song Y, Sanchez-Cid C, Wang Y, El-Naggar A, Yao Y, Huang Y, Cheuk-Fung Law J, Gu C, Shen H, Gao Y, Qin C, Li H, Zhang T, Corcoll N, Liu M, Alessi D, Li H, Brandt K, Pico Y, Gu C, Guo J, Su J, Corvini P, Ye M, Rocha-Santos T, He H, Yang Y, Tong M, Zhang W, Suanon F, Brahushi F, Wang Z, Hashsham SA, Virta M, Yuan Q, Jiang G, Tremblay L, Bu Q, Wu J, Peijnenburg WJ, Topp E, Cao X, Jiang X, Zheng M, Zhang T, Luo Y, Zhu L, Li X, Barcelo D, Chen J, Xing B, Amelung W, Cai Z, Naidu R, Shen Q, Pawliszyn J, Zhu Y, Schaeffer A, Rillig M, Wu F, Yu G, Tiedje JM. 2024. Emerging contaminants: A One Health perspective. Innovation (Camb) 5(4):doi:10.1016/j.xinn.2024.100612 PMID:38756954 PMCID:11096751
2023
- Bagga AD, Johnson BP, Zhang Q. 2023. A minimal human physiologically based kinetic model of thyroid hormones and chemical disruption of plasma thyroid hormone binding proteins. Front. Endocrinol 14:1168663. doi:10.3389/fendo.2023.1168663 PMID:37305053 PMCID:PMC1024845
- Cholico G, Fling RR, Sink WJ, Nault R, Zacharewski T. 2023. Inhibition of the urea cycle by the environmental contaminant 2,3,7,8-tetrachlorodibenzo-p-dioxin increases serum ammonia levels in mice. J Biol Chem 300(1):105500. doi:10.1016/j.jbc.2023.105500 PMID:38013089 PMCID:10731612
- Cholico G, Orlowska K, Fling RR, Sink WJ, Zacharewski N, Fader KA, Nault R, Zacharewski TR. 2023. Consequences of reprogramming acetyl-CoA metabolism by 2,3,7,8-tetrachlorodibenzo-p-dioxin in the mouse liver. Sci Rep 13(1):4138. doi:10.1038/s41598-023-31087-9 PMID:36914879 PMCID:PMC1001158
- Filipovic D, Qi W, Kana O, Marri D, LeCluyse EL, Andersen ME, Cuddapah S, Bhattacharya S. 2023. Interpretable predictive models of genome-wide aryl hydrocarbon receptor-DNA binding reveal tissue-specific binding determinants. Toxicol Sci 196(2):170-186. doi:10.1093/toxsci/kfad094 PMID:37707797 PMCID:PMC10682972
- Ivanovski I, Zylstra GJ. 2023. Genetic and functional characterization of a salicylate 1-monooxygenase located on an integrative and conjugative element (ICE) in pseudomonas stutzeri AJR13. Journal of Microbiology 61(12):1025-1032. doi:10.1007/s12275-023-00093-x PMID:38100000
- Jurgelewicz A, Nault R, Harkema JR, Zacharewski TR, LaPres JJ. 2023. Characterizing the impact of simvastatin co-treatment of cell specific TCDD-induced gene expression and systemic toxicity. Sci Rep 13(1):16598. doi:10.1038/s41598-023-42972-8 PMID:37789023 PMCID:PMC10547718
- Kana O, Nault R, Filipovic D, Marri D, Zacharewski T, Bhattacharya S. 2023. Generative modeling of single-cell gene expression for dose-dependent chemical perturbations. Patterns 4(8):100817. doi:10.1016/j.patter.2023.100817 PMID:37602218 PMCID:10436058
- Khan DI, Karmaus P, Bach A, Crawford RB, Kaminski NE. 2023. An in vitro model of human hematopoiesis identifies a regulatory role for the aryl hydrocarbon receptor. Blood Adv doi:10.1182/bloodadvances.2023010169 PMID:37477592
- Kumbale CM, Zhang Q, Voit EO. 2023. Hepatic cholesterol biosynthesis and dioxin-induced dysregulation: A multiscale computational approach. Food Chem Toxicol 181:114086. doi:10.1016/j.fct.2023.114086 PMID:37820785
- Nault R, Cave MC, Ludewig G, Moseley HN, Pennell KG, Zacharewski TR. 2023. A case for accelerating standards to achieve the FAIR principles of environmental health research experimental data. Environ Health Perspect 131(6):65001. doi:10.1289/EHP11484 PMID:37352010 PMCID:PMC10289218
- Orlowska K, Fling RR, Nault R, Schilmiller AL, Zacharewski TR. 2023. Cystine/glutamate Xc- antiprorter induction compensates for transsulfuration pathway repression by 2,3,7,8-tetrachlorodibenzo- p-dioxin (TCDD) to ensure cysteine for heptic glutathione biosynthesis. Chem Res Toxicol 36(6):900-915. doi:10.1021/acs.chemrestox.3c00017 PMID:37184393 PMCID:PMC10284067
- Rance N. 2023. How single-cell transcriptomics provides insight on hepatic responses to TCDD. Curr Opin Toxicol 36:100441. doi:10.1016/j.cotox.2023.100441 PMID:37981901 PMCID:PMC10653208
- Steidmann MM, Liu J, Bayes K, Castro LP, Ferguson-Miller S, LaPres JJ. 2023. Evidence for crosstalk between the aryl hydrocarbon receptor and the translocator protein in mouse lung epithelial cells. Exp Cell Res 429(1):113617. doi:10.1016/j.yexcr.2023.113617 PMID:37172753 PMCID:PMC10330775
- Yu K, Lv Y, Liu C, Boyd SA, Teppen BJ, Li H. 2023. Reaction of decabromodiphenyl ether with organo-modified clay-templated zero-valent iron in water-tetrahydrofuran solution: Nano- to micrometric scale effects. J Hazard Mater 445:130538. doi:10.1016/j.jhazmat.2022.130538
2022
- Cholico G, Nault R, Zacharewski TR. 2022. Genome-wide ChIPseq analysis of AhR, COUP-TF, and HNF4 enrichment in TCDD-treated mouse liver. Int J Mol Sci 23(3):1558. doi:10.3390/ijms23031558 PMID:35163483 PMCID:PMC8836158
- Jing L, Zhang Q. 2022. Intrathyroidal feedforward and feedback network regulating thyroid hormone synthesis and secretion. Front. Endocrinol 13:992883. doi:10.3389/fendo.2022.992883 PMID:36187113 PMCID:PMC9519864
- Liu R, Zacharewski TR, Conolly RB, Zhang Q. 2022. A physiologically based pharmacokinetic (PBPK) modeling framework for mixtures of dioxin-like compounds. Toxics 10(11):700. doi:10.3390/toxics10110700 PMID:36422908 PMCID:PMC9698634
- Liu S, Pi J, Zhang Q. 2022. Signal amplification in the KEAP1-NRF2-ARE antioxidant response pathway. Redox Biol 54:102389. doi:10.1016/j.redox.2022.102389 PMID:35792437 PMCID:PMC9287733
- Nault R, Saha S, Bhattacharya S, Dodson J, Sinha S, Maiti T, Zacharewski TR. 2022. Benchmarking of a Bayesian single cell RNAseq differential gene expression test for dose-response study designs. Nucleic Acids Res doi:10.1093/nar/gkac019 PMID:35061903
- Nault R, Saha S, Bhattacharya S, Sinha S, Maiti T, Zacharewski TR. 2022. Single cell transcriptomics shows dose-dependent disruption of hepatic zonation by TCDD in mice. Toxicol Sci doi:10.1093/toxsci/kfac109 PMID:36222588
- Orlowska K, Fling RR, Nault R, Sink WJ, Schilmiller AL, Zacharewski TR. 2022. Dioxin-elicited decrease in cobalamin redirects propionyl-CoA metabolism to the beta-oxidation-like pathway resulting in acrylyl-CoA conjugate buildup. J Biol Chem 298(9):102301. doi:10.1016/j.jbc.2022.102301 PMID:35931118 PMCID:PMC9418907
- Shi Z, Xia M, Xiao S, Zhang Q. 2022. Identification of nonmonotonic concentration-responses in Tox21 high-throughput screening estrogen receptor assays. Toxicol Appl Pharmacol 452:116206. doi:10.1016/j.taap.2022.116206 PMID:35988584 PMCID:PMC9452481
- Zhou J, Blevins L, Crawford RB, Kaminski NE. 2022. Role of programmed cell death protein-1 and lymphocyte specific protein tyrosine kinase in the aryl hydrocarbon receptor- mediated impairment of the IgM response in human CD5(+) innate-like B cells. Front Immunol doi:10.3389/fimmu.2022.884203 PMID:35558082 PMCID:PMC9088000
2021
- Almnehlawi HS, Zylstra GJ, Dean RK, Capozzi SL, Rodenburg LA, Fennell DE. 2021. Agromyces and Arthrobacter isolates from surficial sediments of the Passaic River degrade dibenzofuran, dibenzo-p-dioxin and 2-monochlorodibenzo-p-dioxin. Bioremediat J 21:doi:10.1080/10889868.2021.1892027
- Blevins L, Zhou J, Crawford RB, Kaminski NE. 2021. Identification of a sensitive human immunological target of aryl hydrocarbon receptor activation: CD5+ innate-like B cells. Front Immunol 12:635748. doi:10.3389/fimmu.2021.635748 PMID:33936048 PMCID:PMC8082145
- Cholico G, Fling RR, Zacharewski TR, Zacharewski N, Fader KA, Nault R. 2021. Thioesterase induction by 2,3,7,8-tetrachlorodibenzo-p-dioxin results in a futile cycle that inhibits hepatic beta-oxidation. Sci Rep 11:15689. doi:10.1038/s41598-021-95214-0 PMID:34344994 PMCID:PMC8333094
- Fling RR, Zacharewski TR. 2021. Aryl hydrocarbon receptor (AhR) activation by 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) dose-dependently shifts the gut microbiome consistent with the progression of non-alcoholic fatty liver disease. Int J Mol Sci 22(22):12431. doi:10.3390/ijms222212431 PMID:34830313 PMCID:PMC8625315
- Gingrich J, Filipovic D, Conolly RB, Veiga-Lopez A. 2021. Pregnancy-specific physiologically-based toxicokinetic models for bisphenol A and bisphenol S. Environ Int 147:106301. doi:10.1016/j.envint.2020.106301 PMID:33360411 PMCID:PMC7856209
- Kumbale CM, Voit EO, Zhang Q. 2021. Emergence and enhancement of ultrasensitivity through posttranslational modulation of protein stability. Biomolecules 11(11):1741. doi:10.3390/biom11111741 PMID:34827739 PMCID:PMC8615576
- Liu S, Pi J, Zhang Q. 2021. Mathematical modeling reveals quantitative properties of KEAP1-NRF2 signaling. Redox Biol 47:doi:10.1016/j.redox.2021.102139 PMID:34600335 PMCID:PMC8531862
- Mutter TY, Zylstra GJ. 2021. Differential roles of three different upper pathway meta ring cleavage product hydrolases in the degradation of dibenzo-p-dioxin and dibenzofuran by Sphingomonas wittichii strain RW1. Appl Environ Microbiol 87:doi:10.1128/AEM.01067-21 PMID:34469199 PMCID:PMC8552877
- Mutter TY, Zylstra GJ. 2021. Separate upper pathway ring cleavage dioxygenases are required for growth of Sphingomonas wittichii strain RW1 on dibenzofuran and dibenzo-p-dioxin. Appl Environ Microbiol 87:doi:10.1128/AEM.02464-20 PMID:33741618
- Nault R, Fader KA, Zacharewski TR. 2021. Single-nuclei RNA sequencing assessment of the hepatic effects of 2,3,7,8-tetrachlorodibenzo-p-dioxin. Cell Mol Gastroenterol Hepatol 11:147-159. doi:10.1016/j.jcmgh.2020.07.012 PMID:32791302 PMCID:PMC7674514
- Olivero-Verbal J, Harkema JR, Roth RA, Ganey PE. 2021. Fenofibrate, a peroxisome proliferator-activated receptor-alpha agonist, blocks steatosis and alters the inflammatory response in a mouse model of inflammation-dioxin interaction. Chem Biol Interact 345:PMID:34052195
- Tu Y, Premachandra GS, Boyd SA, Sallach JB, Li H, Teppen BJ, Johnston CT. 2021. Synthesis and evaluation of Fe(3)O(4)-impregnated activated carbon for dioxin removal. Chemosphere 263:128263. doi:10.1016/j.chemosphere.2020.128263 PMID:33297207 PMCID:PMC7733032
- Warren M, Radulescu A, Dornbos P, Cuomo D, Zumwalt S, Bueso-Mendoza D, Nitcher M, LaPres JJ, Threadgill DW. 2021. Peanut butter as an alternative dose delivery method to prevent strain-dependent orogastric gavage-induced stress in mouse teratogenicity studies. J Pharmacol Toxicol Methods 107:106948. doi:10.1016/j.vascn.2020.106948 PMID:33387613
- Williams MR, Stedtfeld RD, Stedtfeld TM, Crawford RB, Kuwahara T, Kaminski NE, Tiedje JM, Hashsham SA. 2021. MicroRNA-based host response to toxicant exposure is influenced by the presence of gut microbial populations. Sci Total Environ 797:doi:10.1016/j.scitotenv.2021.149130 PMID:34311349 PMCID:PMC8464502
- Yuan Q, Sallach JB, Rhodes G, Bach A, Crawford RB, Li H, Johnston CT, Teppen BJ, Kaminski NE, Boyd SA. 2021. Natural organic matter does not diminish the mammalian bioavailability of 2,3,7,8-tetrachlorodibenzo-p-dioxin. Chemosphere 264(Pt1):128420. doi:10.1016/j.chemosphere.2020.128420 PMID:33032214 PMCID:PMC7749823 (ahead of print)
2020
- Blevins L, Zhou J, Crawford RB, Kaminski NE. 2020. TCDD-mediated suppression of naive human B cell IgM secretion involves aryl hydrocarbon receptor-mediated reduction in STAT3 serine 727 phosphorylation and is restored by interferon-y. Cell Signal 65:109447. doi:10.1016/j.cellsig.2019.109447 PMID:31678681 PMCID:PMC6903688
- Chai B, Tsoi TV, Sallach JB, Liu C, Landgraf J, Bezdek M, Zylstra GJ, Li H, Johnston CT, Teppen BJ, Cole JR, Boyd SA, Tiedje JM. 2020. Bioavailability of clay-adsorbed dioxin to Sphingomonas wittichii RW1 and its associated genome-wide shifts in gene expression. Sci Total Environ 712:135525. doi:10.1016/j.scitotenv.2019.135525 PMID:32050392
- Dornbos P, Arkatkar A, LaPres JJ. 2020. An automated method to predict mouse gene and protein sequences using variant data. G3 (Bethesda) 10(3):925-932. doi:10.1534/g3.119.400983 PMID:31911484 PMCID:PMC7056971
- Doskey CM, Fader KA, Nault R, Lydic TA, Matthews J, Potter D, Sharratt B, Williams K, Zacharewski TR. 2020. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) alters hepatic polyunsaturated fatty acid metabolism and eicosanoid biosynthesis in female Sprague-Dawley rats. Toxicol Appl Pharmacol 398:14. doi:10.1016/j.taap.2020.115034 PMID:32387183 PMCID:PMC7294678
- Fling RR, Doskey CM, Fader KA, Nault R, Zacharewski TR. 2020. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) dysregulates hepatic one carbon metabolism during the progression of steatosis to steatohepatitis with fibrosis in mice. Sci Rep 10:14831. doi:10.1038/s41598-020-71795-0 PMID:32908189 PMCID:PMC7481292
2019
- Cox J, Chung M, Hamm JA, Zwickle A, Cruz S, Dearing J. 2019. Working with institutional stakeholders: Propositions for alternative approaches to community engagement. Int J Environ Res Public Health 16:4010. doi:10.3390/ijerph16204010 PMID:31635112 PMCID:PMC6844076
- Cruz S. 2019. Themes across new directions in community engagement. Int J Environ Res Public Health 16:3724. doi:10.3390/ijerph16193724 PMID:31623297 PMCID:PMC6801676
- Davis JD, Kumbale CM, Zhang Q, Voit EO. 2019. Dynamical systems approaches to personalized medicine. Curr Opin Biotechnol 58:168-174. doi:10.1016/j.copbio.2019.03.005 PMID:30978644 PMCID:PMC7050596
- Dearing J. 2019. Scaling up solutions to toxic contamination in communities. Int J Environ Res Public Health 16(3):doi:10.3390/ijerph16173034 PMID:31443335 PMCID:PMC6747373
- Dornbos P, Jurgelewicz A, Fader KA, Williams K, Zacharewski TR, LaPres JJ. 2019. Characterizing the role of HMG-CoA reductase in aryl hydrocarbon receptor-mediated liver injury in C57BL/6 mice. Sci Rep 9(1):15828. doi:10.1038/s41598-019-52001-2 PMID:31676775 PMCID:PMC6825130
- Fader KA, Nault R, Doskey CM, Fling RR, Zacharewski TR. 2019. 2,3,7,8-Tetrachlorodibenzo-p-dioxin abolishes circadian regulation of hepatic metabolic activity in mice. Sci Rep 9:6514. doi:10.1038/s41598-019-42760-3 PMID:31015483 PMCID:PMC6478849
- Gao F, Hirn M, Perlmutter M, Wolf G. 2019. Geometric wavelet scattering on graphs and manifolds. Wavelets and Sparsity Xviii doi:10.1117/12.2529615
- Guo J, Quensen JF, Sun Y, Wang Q, Brown C, Cole JR, Tiedje JM. 2019. Review, evaluation, and directions for gene-targeted assembly for ecological analyses of metagenomes. Front Genet 10:doi:10.3389/fgene.2019.00957 PMID:31749830 PMCID:PMC6843070
- Hamm JA, Cox J, Zwickle A, Zhuang J, Cruz S, Upham BL, Chung M, Dearing J. 2019. Trust in whom? Dioxin, organizations, risk perception, and fish consumption in Michigan's Saginaw Bay watershed. J Risk Research 22:1624-1637. doi:10.1080/13669877.2018.1501599 PMID:32336934 PMCID:PMC7182128
- Josyula N, Andersen ME, Kaminski NE, Dere E, Zacharewski TR, Bhattacharya S. 2019. Gene co-regulation and co-expression in the aryl hydrocarbon receptor-mediated transcriptional regulatory network in the mouse liver. Arch Toxicol 94:113-126. doi:10.1007/s00204-019-02620-5 PMID:31728591
- Sallach JB, Crawford RB, Li H, Johnston CT, Teppen BJ, Kaminski NE, Boyd SA. 2019. Activated carbons of varying pore structure eliminate the bioavailability of 2,3,7,8-tetrachlorodibenzo-p-dioxin to a mammalian (mouse) model. Sci Total Environ 650:2231-2238. doi:10.1016/j.scitotenv.2018.09.270
- Williams M, Hashsham SA. 2019. Direct or DNA extraction-free amplification and quantification of foodborne pathogens. Methods Mol Biol 1918:21-33. doi:10.1007/978-1-4939-9000-9_2
- Zhang Q, Caudle W, Pi J, Bhattacharya S, Andersen ME, Kaminski NE, Conolly RB. 2019. Embracing systems toxicology at single-cell resolution. Curr Opin Toxicol 16:49-57. doi:10.1016/j.cotox.2019.04.003 PMID:31768481 PMCID:PMC6876623
- Zhuang J, Cox JG, Chung M, Hamm JA, Zwickle A, Upham BL. 2019. Risk, stigma, trustworthiness, and citizen participation a multifaceted analysis of media coverage of dioxin contamination in Midland, Michigan. Int J Environ Res Public Health 16:4165. doi:10.3390/ijerph16214165 PMID:31671717 PMCID:PMC6862584
- Zwickle A, Cox JG, Hamm JA, Upham BL, Chung M, Cruz S, Dearing J. 2019. The Effect of Dioxin Contamination and Remediation on Property Values. Int J Environ Res Public Health 16:4010. doi:10.3390/ijerph16203900 PMID:31618820 PMCID:PMC6843844
2018
- Dornbos P, LaPres JJ. 2018. Incorporating population-level genetic variability within laboratory models in toxicology: From the individual to the population. Toxicology 395:1-8. doi:10.1016/j.tox.2017.12.007 PMID:29275117 PMCID:PMC5801153
- Dornbos P, Warren M, Crawford RB, Kaminski NE, Threadgill DW, LaPres JJ. 2018. Characterizing Serpinb2 as a modulator of TCDD-induced suppression of the B cell. Chem Res Toxicol 31(11):1248-1259. doi:10.1021/acs.chemrestox.8b00225 PMID:30339366 (ahead of print)
- Fader KA, Nault R, Raehtz S, McCabe LR, Zacharewski TR. 2018. 2,3,7,8-Tetrachlorodibenzo-p-dioxin dose-dependently increases bone mass and decreases marrow adiposity in juvenile mice. Toxicol Appl Pharmacol 348:85-98. doi:10.1016/j.taap.2018.04.013 PMID:29673856 PMCID:PMC5984050
- Fu H, Wei C, Qu X, Li H, Zhu D. 2018. Strong binding of apolar hydrophobic organic contaminants by dissolved black carbon released from biochar: a mechanism of pseudomicelle partition and environmental implications. Environ Pollut 232:402-410. doi:10.1016/j.envpol.2017.09.053 PMID:28966024
- Goodman JI. 2018. Goodbye to the bioassay. Toxicol Res (Camb) 7(4):558-564. doi:10.1039/c8tx00004b PMID:30090606 PMCID:PMC606236
- Liu C, Chu W, Li H, Boyd SA, Teppen BJ, Mao J, Lehmann J, Zhang W. 2018. Quantification and characterization of dissolved organic carbon from biochars. Geoderma 335:161-169. doi:10.1016/j.geoderma.2018.08.019
- Nault R, Doskey CM, Fader KA, Rockwell CE, Zacharewski TR. 2018. Comparison of hepatic NRF2 and aryl hydrocarbon receptor binding in 2,3,7,8-tetrachlorodibenzo-p-dioxin-treated mice demonstrates NRF2-independent PKM2 induction. Mol Pharmacol 94(2):876-884. doi:10.1124/mol.118.112144 PMID:29752288 PMCID:6022803
- Peng A, Gao J, Chen Z, Wang Y, Li H, Ma LQ, Gu C. 2018. Interactions of gaseous 2-chlorophenol with Fe3+-saturated montmorillonite and their toxicity to human lung cells. Environ Sci Technol 52(9):5208-5217. doi:10.1021/acs.est.7b06664 PMID:29613777
- Stedtfeld RD, Guo X, Stedtfeld TM, Sheng H, Williams MR, Hauschild K, Gunturu S, Tift L, Wang F, Howe A, Chai B, Yin D, Cole JR, Tiedje JM, Hashsham SA. 2018. Primer set 2.0 for highly parallel qPCR array targeting antibiotic resistance genes and mobile genetic elements. FEMS Microbiol Ecol 94(9):8. doi:10.1093/femsec/fiy130 PMID:52926
- Waseem H, Williams M, Stedtfeld RD, Stedtfeld TM, Shanker R, Hashsham SA. 2018. Organ-on-chip systems: an emerging platform for toxicity screening of chemicals, pharmaceuticals, and nanomaterials. Chem Sci 8:203-231. doi:10.1039/9781782623922-00203
- Waseem H, Williams MR, Stedtfeld RD, Stedtfeld TM, Shanker R, Hashsham SA. 2018. Organ-on-chip systems: an emerging platform for toxicity screening of chemicals, pharmaceuticals, and nanomaterials. Chapter 8 in: Nanotoxicology: Experimental and Computational Perspectives. The Royal Society of Chemistry, United Kingdom. pp.203-231.
- Zhang Q, Li J, Middleton A, Bhattacharya S, Conolly RB. 2018. Bridging the data gap from in vitro toxicity testing to chemical safety assessment through computational modeling. Front Public Health 6:261. doi:10.3389/fpubh.2018.00261 PMID:30255008 PMCID:PMC6141783
- Zhang S, Liu Q, Cheng H, Gao F, Liu C, Teppen BJ. 2018. Mechanism responsible for intercalation of dimethyl sulfoxide in kaolinite: Molecular dynamics simulations. Appl Clay Sci 151:46-53. doi:10.1016/j.clay.2017.10.022 PMID:29545655 PMCID:PMC5846688
- Zhang S, Liu Q, Gao F, Ma R, Wu Z, Teppen BJ. 2018. Interfacial structure and interaction of kaolinite intercalated with N-methylformamide: insight from molecular dynamics modeling. Appl Clay Sci 158:204-210. doi:10.1016/j.clay.2018.03.032 PMID:30364591 PMCID:PMC6197067
- Zhang S, Liu Q, Gao F, Teppen BJ. 2018. Molecular dynamics simulation of basal spacing, energetics, and structure evolution of a kaolinite-formamide intercalation complex and their interfacial interaction. Journal of Physical Chemistry C 122:3341-3349. doi:10.1021/acs.jpcc.7b10234 PMID:29657662 PMCID:PMC5896007
- Zhang Y, Boyd SA, Teppen BJ, Tiedje JM, Zhang W, Zhu D, Li H. 2018. Bioavailability of tetracycline to antibiotic resistant Escherichia coli in water-clay systems. Environ Pollut 243(PtB):1078-1086. doi:10.1016/j.envpol.2018.09.059 PMID:30253298
- Zhou J, Henriquez J, Crawford RB, Kaminski NE. 2018. Suppression of the IgM response by aryl hydrocarbon receptor activation in human primary B cells involves impairment of immunoglobulin secretory processes. Toxicol Sci 163(1):doi:10.1093/toxsci/kfy036 PMID:29462421 (ahead of print)
- Zhou J, Zhang Q, Henriquez J, Crawford RB, Kaminski NE. 2018. Lymphocyte-specific protein tyrosine kinase (LCK) is involved in the aryl hydrocarbon receptor-mediated impairment of immunoglobulin secretion in human primary B cells. Toxicol Sci 165(2):322-334. doi:10.1093/toxsci/kfy133 PMID:29860352
2017
- Ahmad F, Stedtfeld RD, Waseem H, Williams MR, Cupples AM, Tiedje JM, Hashsham SA. 2017. Most probable number - loop mediated isothermal amplification (MPN-LAMP) for quantifying waterborne pathogens in <25min. J Microbiol Methods 132:27-33. doi:10.1016/j.mimet.2016.11.010 PMID:27856278 PMCID:PMC5195917
- Ahn E, Choi KY, Kang BS, Zylstra GJ, Kim D, Kim E. 2017. Salicylate degradation by a cold-adapted Pseudomonas sp. Ann Microbiol 67(6):417-424.
- Boyd SA, Sallach JB, Zhang Y, Crawford RB, Li H, Johnston CT, Teppen BJ, Kaminski NE. 2017. Sequestration of 2,3,7,8-tetrachlorodibenzo-p-dioxin by activated carbon eliminates bioavailability and the suppression of immune function in mice. Environ Toxicol Chem 36(10):2671-2678. doi:10.1002/etc.3815 PMID:28370362
- Clemente J, Beauchemin S, MacKinnon T, Martin J, Johnston CT, Joern B. 2017. Initial biochar properties related to the removal of As, Se, Pb, Cd, Cu, Ni, and Zn from an acidic suspension. Chemosphere 170:216-224. doi:10.1016/j.chemosphere.2016.11.154 PMID:28006756
- Fader KA, Nault R, Kirby MP, Markous G, Matthews J, Zacharewski TR. 2017. Convergence of hepcidin defiency, systemic iron overloading, heme accumulation, and REV-ERBalpha/beta activation in aryl hydrocarbon receptor-elicited hepatotoxicity. Toxicol Appl Pharmacol 321:1-17. doi:10.1016/j.taap.2017.02.006 PMID:28213091
- Fader KA, Nault R, Kumagai K, Harkema JR, Zacharewski TR, Zhang C. 2017. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD)-elicited effects on bile acid homeostasis: Alterations in biosynthesis, enterohepatic circulation, and microbial metabolism. Sci Rep 7:5921. doi:10.1038/s41598-017-05656-8 PMID:28725001 PMCID:PMC5517430
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- Stedtfeld RD, Stedtfeld TM, Waseem H, Fitschen-Brown M, Guo X, Chai B, Williams MR, Shook T, Logan A, Graham A, Chae J, Sul WJ, VanHouten J, Cole JR, Zylstra GJ, Tiedje JM, Upham BL, Hashsham SA. 2017. Isothermal assay targeting class 1 integrase gene for environmental surveillance of antibiotic resistance markers. J Environ Manage 198:213-220. doi:10.1016/j.jenvman.2017.04.079 PMID:28460328
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2016
- Boughner LA, Singh P. 2016. Microbial ecology: where are we now?. Postdoc J 4(11):3-17. doi:10.14304/SURYA.JPR.V4N11.2 PMID:27975077 PMCID:PMC5152758
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- Gibson C, Berry TD, Wang R, Spencer JA, Johnston CT, Jiang Y, Bird JA, Filley TR. 2016. Weathering of pyrogenic organic matter induces fungal oxidative enzyme response in single culture inoculation experiments. Organic Geochemistry 92:32-41. doi:10.1016/j.orggeochem.2015.12.003
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- Kovalova N, Manzan MA, Crawford RB, Kaminski NE. 2016. Role of aryl hydrocarbon receptor polymorphisms on TCDD-mediated CYP1B1 induction and IgM suppression by human B cells. Toxicol Appl Pharmacol 309:15-23. doi:10.1016/j.taap.2016.08.011 PMID:27535091 PMCID:PMC5035641
- Liu C, Chuang Y, Li H, Teppen BJ, Boyd SA, Gonzalez J, Johnston CT, Lehmann J, Zhang W. 2016. Sorption of lincomycin by manure-derived biochars from water. J Environ Qual 45(2):519-527. doi:10.2134/jeq2015.06.0320 PMID:27065399
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- Nault R, Fader KA, Ammendolia DA, Dornbos P, Potter D, Sharratt B, Kumagai K, Harkema JR, Lunt SY, Matthews J, Zacharewski TR. 2016. Dose-dependent metabolic reprogramming and differential gene expression in TCDD-elicited hepatic fibrosis. Toxicol Sci 154(2):253-266. doi:10.1093/toxsci/kfw163 PMID:27562557 PMCID:PMC5139066
- Nault R, Fader KA, Kirby MP, Ahmed S, Matthews J, Jones AD, Lunt SY, Zacharewski TR. 2016. Pyruvate kinase isoform switching and hepatic metabolic reprogramming by the environmental contaminant 2,3,7,8-tetrachlorodibenzo-p-dioxin. Toxicol Sci 149(2):358-371. doi:10.1093/toxsci/kfv245 PMID:26582802 PMCID:PMC4900217
- Nault R, Fader KA, Kopec AK, Harkema JR, Zacharewski TR, Luyendyk J. 2016. From the cover: coagulation-driven hepatic fibrosis requires protease activated receptor-1 (PAR-1) in a mouse model of TCDD-elicited steatohepatitis. Toxicol Sci 154(2):381-391. doi:10.1093/toxsci/kfw175 PMID:27613713 PMCID:PMC5139072
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- Singh B, Fang Y, Johnston CT. 2016. A fourier-transform infrared study of biochar aging in soils. Soil Science Society of America Journal 80:613-622. doi:10.2136/sssaj2015.11.0414
- Stedtfeld RD, Stedtfeld TM, Samhan F, Kanitkar YH, Hatzinger PB, Cupples AM, Hashsham SA. 2016. Direct loop mediated isothermal amplification on filters for quantification of Dehalobacter in groundwater. J Microbiol Methods 131:61-67. doi:10.1016/j.mimet.2016.09.025 PMID:27720723
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2015
- Ambrose KV, Tian Z, Wang Y, Smith J, Zylstra GJ, Huang B, Belanger FC. 2015. Functional characterization of salicylate hydroxylase from the fungal endophyte Epichloe festucae. Sci Rep 5:10939. doi:10.1038/srep10939 PMID:26055188 PMCID:PMC4460724
- Fader KA, Nault R, Ammendolia DA, Harkema JR, Williams KJ, Crawford RB, Kaminski NE, Potter D, Sharratt B, Zacharewski TR. 2015. 2,3,7,8-Tetrachlorodibenzo-p-dioxin alters lipid metabolism and depletes immune cell populations in the jejunum of C57BL/6 mice. Toxicol Sci 148(2):567-580. doi:10.1093/toxsci/kfv206 PMID:26377647 PMCID:PMC5009443
- Kostic T, Ellis M, Kronlein M, Stedtfeld TM, Kaneene J, Hashsham SA, Stedtfeld RD. 2015. Thirty-minute screening of antibiotic resistance genes in bacterial isolates with minimal sample preparation in static self-dispensing 64 and 384 assay cards. Appl Microbiol Biotechnol 99(18):7711-7722. doi:10.1007/s00253-015-6774-z PMID:26227406 PMCID:PMC4543423
- Liu C, Gu C, Yu K, Li H, Teppen BJ, Johnston CT, Boyd SA, Zhou D. 2015. Integrating structural and thermodynamic mechanisms for sorption of PCBs by montmorillonite. Environ Sci Technol 49(5):2796-2805. doi:10.1021/es505205p PMID:25629399
- Nault R, Colbry D, Brandenberger C, Zacharewski TR, Harkema JR. 2015. Development of a computational high-throughput tool for the quantitative examination of dose-dependent histological features. Toxicol Pathol 43(3):366-375. doi:10.1177/0192623314544379 PMID:25274660 PMCID:PMC4382446
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- Stedtfeld RD, Liu Y, Stedtfeld TM, Kostic T, Kronlein M, Srivannavit O, Khalife WT, Tiedje JM, Gulari E, Hughes M, Etchebarne B, Hashsham SA. 2015. Static self-directed sample dispensing into a series of reaction wells on a microfluidic card for parallel genetic detection of microbial pathogens. Biomed Microdevices 17(5):89. doi:10.1007/s10544-015-9994-1 PMID:26260693 PMCID:PMC4531140
- Tian H, Guo Y, Pan B, Gu C, Li H, Boyd SA. 2015. Enhanced photoreduction of nitro-aromatic compounds by hydrated electrons derived from indole on natural montmorillonite. Environ Sci Technol 49(13):7784-7792. doi:10.1021/acs.est.5b01026 PMID:26029791
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- Zhang Q, Bhattacharya S, Clewell RA, Carmichael PL, Andersen ME. 2015. Adaptive posttranslational control in cellular stress response pathways and its relationship to toxicity testing and safety assessment. Toxicol Sci 147(2):302-316. doi:10.1093/toxsci/kfv130 PMID:26408567 PMCID:PMC4707198
2014
- Cole JR, Tiedje JM. 2014. History and impact of RDP: a legacy from Carl Woese to microbiology. RNA Biol 11(3):239-243. doi:10.4161/rna.28306 PMID:24607969 PMCID:PMC4008557
- Cole JR, Wang Q, Fish JA, Chai B, McGarrell DM, Sun Y, Brown C, Porras-Alfaro A, Kuske CR, Tiedje JM. 2014. Ribosomal Database Project: data and tools for high throughput rRNA analysis. Nucleic Acids Res 42(Databaseissue):D633-D642. doi:10.1093/nar/gkt1244 PMID:24288368 PMCID:PMC3965039
- Masuda H, Shiwa Y, Yoshikawa H, Zylstra GJ. 2014. Draft genome sequence of the versatile alkane-degrading bacterium Aquabacterium sp. strain NJ1. Genome Announc 2(6):e01271-14. doi:10.1128/genomeA.01271-14 PMID:25477416 PMCID:PMC4256197
- Ye W, Paul D, Gao L, Seckute J, Sangaiah R, Jayaraj K, Zhang Z, Kaminski P, Ealick SE, Gold A, Ball LM. 2014. Ethenoguanines undergo glycosylation by nucleoside 2'-deoxyribosyltransferases at non-natural sites. PLoS One 9(12):e115082. doi:10.1371/journal.pone.0115082 PMID:25521390 PMCID:PMC4270796
- Zhang Q, Bhattacharya S, Conolly RB, Clewell H, Andersen ME. 2014. Molecular signaling network motifs provide a mechanistic basis for cellular threshold responses. Environ Health Perspect 122(12):1261-1270. doi:10.1289/ehp.1408244 PMID:25117432 PMCID:PMC4256703
2013
- Angrish MM, Dominici CY, Zacharewski TR. 2013. TCDD-elicited effects on liver, serum, and adipose lipid composition in C57BL/6 mice. Toxicol Sci 131(1):108-115. doi:10.1093/toxsci/kfs277 PMID:22977169 PMCID:PMC3537129
- Fish JA, Chai B, Wang Q, Sun Y, Brown C, Tiedje JM, Cole JR. 2013. FunGene: The functional gene pipeline and repository. Front Microbiol 4:291. doi:10.3389/fmicb.2013.00291 PMID:24101916 PMCID:PMC3787254
- Forgacs AL, Dere E, Angrish MM, Zacharewski TR. 2013. Comparative analysis of temporal and dose-dependent TCDD-elicited gene expression in human, mouse, and rat primary hepatocytes. Toxicol Sci 133(1):54-66. doi:10.1093/toxsci/kft028 PMID:23418086 PMCID:PMC3627554
- Kopec AK, Boverhof DR, Nault R, Harkema JR, Tashiro C, Potter D, Sharratt B, Chittim B, Zacharewski TR. 2013. Toxicogenomic evaluation of long-term hepatic effects of TCDD in immature, ovariectomized C57BL/6 mice. Toxicol Sci 135(2):465-475. doi:10.1093/toxsci/kft156 PMID:23864506 PMCID:PMC3807621
- Nault R, Forgacs AL, Dere E, Zacharewski TR. 2013. Comparisons of differential gene expression elicited by TCDD, PCB126, βNF, or ICZ in mouse hepatoma Hepa1c1c7 cells and C57BL/6 mouse liver. Toxicol Lett 223(1):52-59. doi:10.1016/j.toxlet.2013.08.013 PMID:23994337 PMCID:PMC4096832
- Nault R, Kim S, Zacharewski TR. 2013. Comparison of TCDD-elicited genome-wide hepatic gene expression in Sprague-Dawley rats and C57BL/6 mice. Toxicol Appl Pharmacol 267(2):184-191. doi:10.1016/j.taap.2012.11.028 PMID:23238561 PMCID:PMC4104405
- Penton C, Johnson TA, Quensen JF, Iwai S, Cole JR, Tiedje JM. 2013. Functional genes to assess nitrogen cycling and aromatic hydrocarbon degradation: primers and processing matter. Front Microbiol 4:279. doi:10.3389/fmicb.2013.00279 PMID:24062736 PMCID:PMC3775264
- Rhodes AN, Fulthorpe RR, Tiedje JM. 2013. Probing the functional diversity of global pristine soil communities with 3-chlorobenzoate reveals that communities of generalists dominate catabolic transformation. Appl Environ Microbiol 79(22):6932-6940. doi:10.1128/AEM.01905-13 PMID:23995940 PMCID:PMC3811530
- Zhang Q, Bhattacharya S, Andersen ME. 2013. Ultrasensitive response motifs: Basic amplifiers in molecular signalling networks. Open Biol 3(4):130031. doi:10.1098/rsob.130031 PMID:23615029 PMCID:PMC3718334
- Zhang Q, Kline DE, Bhattacharya S, Crawford RB, Conolly RB, Thomas RS, Andersen ME, Kaminski NE. 2013. All-or-none suppression of B cell terminal differentiation by environmental contaminant 2,3,7,8-tetrachlorodibenzo-p-dioxin. Toxicol Appl Pharmacol 268(1):17-26. doi:10.1016/j.taap.2013.01.015 PMID:23357550 PMCID:PMC3594464
2012
- Baushke SW, Stedtfeld RD, Tourlousse DM, Ahmad F, Wick LM, Gulari E, Tiedje JM, Hashsham SA. 2012. Identification of non-specific hybridization using an empirical equation fitted to non-equilibrium dissociation curves. J Microbiol Methods 90(1):29-35. doi:10.1016/j.mimet.2012.04.003 PMID:22537822 PMCID:PMC3366151
- Chang H, Zylstra GJ, Chae J. 2012. Genome sequence of n-Alkane-degrading hydrocarboniphaga effusa strain AP 103(T) (ATCC BAA-332(T)). J Bacteriol 194:5120. doi:10.1128/jb.01017-12 PMID:22933753 PMCID:PMC3430359
- Fullerton AM, Roth RA, Ganey PE. 2012. 2,3,7,8-TCDD enhances the sensitivity of mice to concanavalin A immune-mediated liver injury. Toxicol Appl Pharmacol 266(2):317-327. doi:10.1016/j.taap.2012.11.009 PMID:23164664 PMCID:PMC3535831
- Johnston CT, Khan B, Barth EF, Chattopadhyay S, Boyd SA. 2012. Nature of the interlayer environment in an organoclay optimized for the sequestration of dibenzo-p-dioxin. Environ Sci Technol 46(17):9584-9591. doi:10.1021/es300699y PMID:22856528 PMCID:PMC4327870
- Liu C, Hui L, Johnston CT, Boyd SA, Teppen BJ. 2012. Relating clay structural factors to dioxin adsorption by smectites: molecular dynamics simulations. Soil Science Society of America Journal 76:110-120. doi:10.2136/sssaj2010.0450
- Yoo M, Kim D, Choi KY, Chae J, Zylstra GJ, Kim E. 2012. Draft genome sequence and comparative analysis of the superb aromatic-hydrocarbon degrader Rhodococcus sp strain DK17. J Bacteriol 194(16):4440. doi:10.1128/JB.00844-12 PMID:22843580 PMCID:PMC3416227
- Yu K, Gu C, Boyd SA, Liu C, Teppen BJ, Li H, Sun C. 2012. Rapid and extensive debromination of decabromodiphenyl ether by smectite clay-templated subnanoscale zero-valent iron. Environ Sci Technol 46(16):8969-8975. doi:10.1021/es300516e PMID:22846063
2011
- Angrish MM, Jones AD, Harkema JR, Zacharewski TR. 2011. Aryl hydrocarbon receptor-mediated induction of stearoyl-CoA desaturase 1 alters hepatic fatty acid composition in TCDD-elicited steatosis. Toxicol Sci 124(2):299-310. doi:10.1093/toxsci/kfr226 PMID:21890736 PMCID:PMC3216411
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- De Abrew KN, Phadnis AS, Crawford RB, Kaminski NE, Thomas RS. 2011. Regulation of Bach2 by the aryl hydrocarbon receptor as a mechanism for suppression of B-cell differentiation by 2,3,7,8-tetrachlorodibenzo-p-dioxin. Toxicol Appl Pharmacol 252(2):150-158. doi:10.1016/j.taap.2011.01.020 PMID:21296099 PMCID:PMC3106294
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- Dere E, Lo R, Celius T, Matthews J, Zacharewski TR. 2011. Integration of genome-wide computation DRE search, AhR ChIP-chip and gene expression analyses of TCDD-elicited responses in the mouse liver. BMC Genomics 12:365. doi:10.1186/1471-2164-12-365 PMID:21762485 PMCID:PMC3160422
- Gu C, Liu C, Ding Y, Li H, Teppen BJ, Johnston CT, Boyd SA. 2011. Clay mediated route to natural formation of Polychlorodibenzo-p-dioxins. Environ Sci Technol 45(8):3445-3451. doi:10.1021/es104225d PMID:21434682
- Gu C, Liu C, Johnston CT, Teppen BJ, Li H, Boyd SA. 2011. Pentachlorophenol radical cations generated on Fe(III)-montmorillonite initiate octachlorodibenzo-p-dioxin formation in clays: density functional theory and fourier transform infrared studies. Environ Sci Technol 45(4):1399-1406. doi:10.1021/es103324z PMID:21254769 PMCID:PMC3094738
- Iwai S, Johnson TA, Chai B, Hashsham SA, Tiedje JM. 2011. Comparison of the specificities and efficacies of primers for aromatic dioxygenase gene analysis of environmental samples. Appl Environ Microbiol 77:3551-3557. doi:10.1128/aem.00331-11 PMID:21498766 PMCID:PMC3127589
- Jia H, Gu C, Boyd SA, Teppen BJ, Johnston CT, Li H, Song C. 2011. Comparison of reactivity of nanoscaled zero-valent iron formed on clay surfaces. Soil Science Society of America Journal 75(2):357-364. doi:10.2136/sssaj2010.0080nps
- Kaplan BL, Crawford RB, Kovalova N, Arencibia A, Kim S, Pinnavaia TJ, Boyd SA, Teppen BJ, Kaminski NE. 2011. TCDD adsorbed on silica as a model for TCDD contaminated soils: evidence for suppression of humoral immunity in mice. Toxicology 282(3):82-87. doi:10.1016/j.tox.2011.01.013 PMID:21272611 PMCID:PMC3089373
- Kim D, Yoo M, Choi KY, Kang BS, Kim TK, Hong SG, Zylstra GJ, Kim E. 2011. Differential degradation of bicyclics with aromatic and alicyclic rings by Rhodococcus sp strain DK17. Appl Environ Microbiol 77:8280-8287. doi:10.1128/AEM.06359-11 PMID:21965391 PMCID:PMC3233041
- Kopec AK, D'Souza ML, Mets BD, Burgoon LD, Reese SE, Archer KJ, Potter D, Tashiro C, Sharratt B, Harkema JR, Zacharewski TR. 2011. Non-additive hepatic gene expression elicited by 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) and 2,2 ',4,4 ',5,5 '-hexachlorobiphenyl (PCB153) co-treatment in C57BL/6 mice. Toxicol Appl Pharmacol 256:154-167. doi:10.1016/j.taap.2011.08.002 PMID:21851831 PMCID:PMC4126514
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- Lu H, Crawford RB, Kaplan BL, Kaminski NE. 2011. 2,3,7,8-Tetrachlorodibenzo-p-dioxin-mediated disruption of the CD40 ligand-induced activation of primary human B cells. Toxicol Appl Pharmacol 255:251-260. doi:10.1016/j.taap.2011.06.026 PMID:21807014 PMCID:PMC3189629
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2010
- Andersen ME, Zhang Q, Bhattacharya S. 2010. Modeling Gene and Protein Expression - Nested Motifs in Cellular and Tissue Response Networks. Chapter 10 in: Quantitative Modeling in Toxicology. John Wiley & Sons, Hoboken, NJ.
- Bhattacharya S, Conolly RB, Kaminski NE, Thomas RS, Andersen ME, Zhang Q. 2010. A bistable switch underlying B-cell differentiation and its disruption by the environmental contaminant 2,3,7,8-tetrachlorodibenzo-p-dioxin. Toxicol Sci 115(1):51-65. doi:10.1093/toxsci/kfq035 PMID:20123757 PMCID:PMC2855357
- Bhattacharya S, Zhang Q, Andersen ME. 2010. Bistable Signaling Motifs and Cell Fate Decisions. Chapter 8 in: Quantitative Modeling in Toxicology. John Wiley & Sons, Hoboken, NJ.
- Boyd SA, Johnston CT, Laird DA, Teppen BJ, Li H. 2010. Comprehensive Study of Organic Contaminant Adsorption by Clays: Methodologies, Mechanisms and Environmental Implications. In: Volume 3, Biophysico-Chemical Processes of Anthropogenic Organic Compounds in Environmental Systems. Wiley, New York, NY.
- Chang H, Zylstra GJ. 2010. Xanthomonads. In: Handbook of Hydrocarbon and Lipid Microbiology. Springer Verlag GmbH, Heidelberg, Germany. pp.1805-1811.
- Crawford RB, Kaminski NE, Lu H, North CM. 2010. 2,3,7,8-Tetrachlorodibenzo-p-dioxin-mediated suppression of toll-like receptor stimulated B-lymphocyte activation and initiation of plasmacytic differentiation. Toxicol Sci 116:99-112. doi:10.1093/toxsci/kfq095 PMID:20348231 PMCID:PMC2886857
- Cummings JA, Clemens LG, Nunez AA. 2010. Mother counts: how effects of environmental contaminants on maternal care could affect the offspring and future generations. Front Neuroendocrinol 31:440-451. doi:10.1016/j.yfrne.2010.05.004 PMID:20685293
- De Abrew KN, Kaminski NE, Thomas RS. 2010. An integrated genomic analysis of aryl hydrocarbon receptor-mediated inhibition of B-cell differentiation. Toxicol Sci 118(2):454-469. doi:10.1093/toxsci/kfq265 PMID:20819909 PMCID:PMC3003543
- De Abrew KN, Kaminski NE, Thomas RS. 2010. Identification of direct AhR-regulated genes involved in B cell differentiation. The Toxicologist 99 (Abst. 1195).
- Forgacs AL, Burgoon LD, Lynn SG, LaPres JJ, Zacharewski TR. 2010. Effects of TCDD on the expression of nuclear encoded mitochondrial genes. Toxicol Appl Pharmacol 246(1-2):58-65. doi:10.1016/j.taap.2010.04.006 PMID:20399798 PMCID:PMC4030424
- Gu C, Jiang H, Li H, Teppen BJ, Boyd SA. 2010. Synthesis of highly reactive subnano-sized zero-valent iron using smectite clay templates. Environ Sci Technol 44(11):4258-4263. doi:10.1021/es903801r PMID:20446730 PMCID:PMC2892840
- Iwai S, Chai B, Sul WJ, Cole JR, Hashsham SA, Tiedje JM. 2010. Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment. ISME J 4(2):279-285. doi:10.1038/ismej.2009.104 PMID:19776767 PMCID:PMC2808446
- Johnston CT. 2010. Probing the nanoscale architecture of clay minerals. Clays and Clay Minerals 45:245-279. doi:10.1180/claymin.2010.045.3.245
- Kline DE, Zhang Q, Bhattacharya S, Andersen ME, Conolly RB, Crawford RB, Kaminski NE. 2010. 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) Suppresses LPS-activated Binary Switching of B Cells to Plasma Cells.
- Kopec AK, Burgoon LD, Ibrahim-Aibo D, Burg AR, Lee AW, Tashiro C, Sharratt B, Harkema JR, Rowlands C, Budinsky R, Zacharewski TR. 2010. Automated dose-response analysis and comparative toxicogenomic evaluation of the hepatic effects elicited by TCDD, TCDF, and PCB126 in C57BL/6 mice. Toxicol Sci 118(1):286-297. doi:10.1093/toxsci/kfq236 PMID:20702594 PMCID:PMC2955213
- Kopec AK, Burgoon LD, Ibrahim-Aibo D, Mets BD, Tashiro C, Potter D, Sharratt B, Harkema JR, Zacharewski TR. 2010. PCB153-elicited hepatic responses in the immature, ovariectomized C57BL/6 mice: comparative toxicogenomic effects of dioxin and non-dioxin-like ligands. Toxicol Appl Pharmacol 243(3):359-371. doi:10.1016/j.taap.2009.12.003 PMID:20005886 PMCID:PMC3987113
- Lu H, Crawford RB, Suarez-Martinez J, Kaplan BL, Kaminski NE. 2010. Induction of the aryl hydrocarbon receptor-responsive genes and modulation of the immunoglobulin M response by 2,3,7,8-tetrachlorodibenzo-p-dioxin in primary human B cells. Toxicol Sci 118(1):86-97. doi:10.1093/toxsci/kfq234 PMID:20702590 PMCID:PMC2955211
- Lu H, Kaplan BL, Crawford RB, Kaminski NE. 2010. Characterization of 2,3,7,8-tetrachlorodibenzo-pdioxin Effect on the CD40L-Induced IgM Antibody Responses in Primary Mouse and Human B Lymphocytes. The Toxicologist 99 (Abst. 1533).
- Ni Chadhain SM, Zylstra GJ. 2010. Functional Gene Diversity, Biogeography, and Dynamics. In: Handbook of Hydrocarbon and Lipid Microbiology. Springer Verlag GmbH, Heidelberg, Germany. pp.2413-2422.
- North CM, Crawford RB, Lu H, Kaminski NE. 2010. Multiparametric single cell analysis of toll-like receptor activated kinase phosphorylation alteration by 2,3,7,8-Tetrachlorodibenzo-p-dioxin. The Toxicologist 99 (Abst. 632).
- Parnell JJ, Denef VJ, Park J, Tsoi TV, Tiedje JM. 2010. Environmentally relevant parameters affecting PCB degradation: carbon source- and growth phase-mitigated effects of the expression of the biphenyl pathway and associated genes in Burkholderia xenovorans LB400. Biodegradation 21(1):147-156. doi:10.1007/s10532-009-9289-4 PMID:19672561
- Phadnis AS, Manzan MA, Thomas RA, Kaminski NE. 2010. Direct regulation of Bach2 by 2,3,7,8- Tetrachlorodibenzo-p-dioxin in B lymphoma CH12.LX. The Toxicologist 99 (Abst. 73).
- Saini Y, Greenwood K, Merrill C, Kim KY, Patial S, Parameswaran N, Harkema JR, LaPres JJ. 2010. Acute cobalt-induced lung injury and the role of hypoxia-inducible factor 1 alpha in modulating inflammation. Toxicol Sci 116:673-681. doi:10.1093/toxsci/kfq155 PMID:20511350 PMCID:PMC2905409
- Saini Y, Lewandowski R, Bramble L, Harkema JR, LaPres JJ, Kim KY. 2010. Role of hypoxia-inducible factor 1{alpha} in modulating cobalt-induced lung inflammation. Am J Physiol 298(2):L139-L147. doi:10.1152/ajplung.00252.2009 PMID:19915160 PMCID:PMC2822559
- Shao H, Pinnavaia TJ. 2010. Synthesis and properties of nanoparticle forms saponite clay, cancrinite zeolite and phase mixtures thereof. Microporous Mesoporous Mater 133:10-17. doi:10.1016/j.micromeso.2010.04.002 PMID:21709774 PMCID:PMC3121892
- Thiex NW, Chames MC, Loch-Caruso R. 2010. Tissue-specific induction of COX-2 and prostaglandins in lipopolysaccharide-stimulated extraplacental human gestational membranes in a 2-chamber transwell culture system. Reprod Sci 17(12):1120-1129. doi:10.1177/1933719110378344 PMID:20861394 PMCID:PMC3096444
- Trosko JE, Upham BL. 2010. A paradigm shift is required for the risk assessment of potential human health after exposure to low level chemical exposures - a response to the toxicity testing in the 21st century report. Int J Toxicol 29(4):344-357. doi:10.1177/1091581810371384 PMID:20634539
- Xue S, Pinnavaia TJ. 2010. Methylene-functionalized saponite: a new type of organoclay with CH(2) groups substituting for bridging oxygen centers in the tetrahedral sheet. Appl Clay Sci 48(1-2):60-66. doi:10.1016/j.clay.2009.11.006 PMID:20508733 PMCID:PMC2874865
- Zhang Q, Bhattacharya S, Andersen ME, Conolly RB. 2010. Computational systems biology and dose-response modeling in relation to new directions in toxicity testing. J Environ Sci Health B 13(2-4):253-76. doi:10.1080/10937404.2010.483943 PMID:20574901
- Zhang Q, Bhattacharya S, Kline DE, Crawford RB, Thomas RS, Kaminski NE, Andersen ME, Conolly RB. 2010. Stochastic modeling of B lymphocyte terminal differentiation and its suppression by dioxin. BMC Syst Biol 4:40. doi:10.1186/1752-0509-4-40 PMID:20359356 PMCID:PMC2859749
- Zhang Q, Bhattacharya S, Woods CG, Andersen ME. 2010. Ultrasensitive Response Motifs in Biochemical Networks. Chapter 9 in: Quantitative Modeling in Toxicology. John Wiley & Sons, Hoboken, NJ. pp.199-218.
- Zhang Q, Pi J, Woods CG, Andersen ME. 2010. A systems biology perspective on Nrf2-mediated antioxidant response. Toxicol Appl Pharmacol 244(1):84-97. doi:10.1016/j.taap.2009.08.018 PMID:19716833 PMCID:PMC2837757
2009
- Crawford RB, North CM, Kaplan BL, Kaminski NE, Lu H. 2009. Establishment of an immunoglobulin m antibody-forming cell response model for characterizing immunotoxicity in primary human B cells. Toxicol Sci 112(2):363-373. doi:10.1093/toxsci/kfp224 PMID:19767444 PMCID:PMC2777081
- Liu C, Li H, Teppen BJ, Jonhston CT, Boyd SA. 2009. Mechanisms associated with the high adsorption of dibenzo-p-dioxin from water by smectite clays. Environ Sci Technol 43(8):2777-83. doi:10.1021/es802381z PMID:19475949
- North CM, Crawford RB, Kaminski NE, Lu H. 2009. Simultaneous in vivo time course and dose response evaluation for TCDD-induced impairment of the LPS-stimulated primary IgM response. Toxicol Sci 112(1):123-132. doi:10.1093/toxsci/kfp187 PMID:19675145 PMCID:PMC2769062
- North CM, Kim B, Snyder N, Crawford RB, Holsapple MP, Kaminski NE. 2009. TCDD-mediated suppression of the in vitro anti-sheep erythrocyte IgM antibody forming cell response is reversed by interferon-gamma. Toxicol Sci 107(1):85-92. doi:10.1093/toxsci/kfn223 PMID:18948302 PMCID:PMC2638643
- Park I, Pinnavaia TJ. 2009. Large-pore mesoporous silica with three-dimensional wormhole framework structures. Microporous Mesoporous Mater 118(1-3):239. doi:10.1016/j.micromeso.2008.08.027 PMID:20126285 PMCID:PMC2663960
- Prouzet E, Boissière C, Kim SS, Pinnavaia TJ. 2009. Roughness of mesoporous silica surfaces deduced from adsorption measurements. Microporous Mesoporous Mater 119:9-17. doi:10.1016/j.micromeso.2008.09.031
- Rana K, Boyd SA, Teppen BJ, Li H, Liu C, Johnston CT. 2009. Probing the microscopic hydrophobicity of smectite surfaces A vibrational spectroscopic study of dibenzo-p-dioxin sorption to smectite. Phys Chem Chem Phys 11(16):2976-2985. doi:10.1039/b822635k PMID:19421512
- Schneider D, Yoo B, Kaminski NE. 2009. Involvement of Blimp-1 and AP-1 dysregulation in the 2,3,7,8-Tetrachlorodibenzo-p-dioxin-mediated suppression of the IgM response by B cells. Toxicol Sci 108(2):377-388. doi:10.1093/toxsci/kfp028 PMID:19237549 PMCID:PMC2664693
- Schuler L, Jouanneau Y, Ni Chadhain SM, Meyer C, Pouli M, Zylstra GJ, Hols P, Agathos SN. 2009. Characterization of a ring-hydroxylating dioxygenase from phenanthrene-degrading Sphingomonas sp strain LH128 able to oxidize benz[a]anthracene. Appl Microbiol Biotechnol 83(3):465-475. doi:10.1007/s00253-009-1858-2 PMID:19172265
- Sul WJ, Park J, Quensen JF, Rodrigues JM, Seliger L, Tsoi TV, Zylstra GJ, Tiedje JM. 2009. DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment. Appl Environ Microbiol 75(17):5501-5506. doi:10.1128/AEM.00121-09 PMID:19648381 PMCID:PMC2737913
- Wang B, Bobe G, Bourquin LD, LaPres JJ. 2009. High sucrose diets promote intestinal epithelial cell proliferation and tumorigenesis in APC(Min) mice by increasing insulin and IGF-I levels. Nutr Cancer 61(1):81-93. doi:10.1080/01635580802372609 PMID:19116878
- Wang B, Bobe G, LaPres JJ, Bourquin LD. 2009. Dietary carbohydrate source alters gene expression profile of intestinal epithelium in mice. Nutr Cancer 61(1):146-155. doi:10.1080/01635580802372617 PMID:19116885
- Wu M, Yang X, Chan C. 2009. A dynamic analysis of IRS-PKR signaling in liver cells: a discrete modeling approach. PLoS One 4(12):e8040. doi:10.1371/journal.pone.0008040 PMID:19956598 PMCID:PMC2779448
- Zhang Q, Pi J, Woods CG, Andersen ME. 2009. Phase I to II cross-induction of xenobiotic metabolizing enzymes: a feedforward control mechanism for potential hormetic responses. Toxicol Appl Pharmacol 237(3):345-356. doi:10.1016/j.taap.2009.04.005 PMID:19371757 PMCID:PMC2696203
2008
- Boverhof DR, Burgoon LD, Williams KJ, Zacharewski TR. 2008. Inhibition of estrogen-mediated uterine gene expression responses by dioxin. Mol Pharmacol 73(1):82-93. doi:10.1124/mol.107.040451 PMID:17942748
- Cardenas E, Tiedje JM. 2008. New tools for discovering and characterizing microbial diversity. Curr Opin Biotechnol 19(6):544-549. doi:10.1016/j.copbio.2008.10.010 PMID:18984052
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- Kopec AK, Boverhof DR, Burgoon LD, Ibrahim-Aibo D, Harkema JR, Tashiro C, Chittim B, Zacharewski TR. 2008. Comparative toxicogenomic examination of the hepatic effects of PCB126 and TCDD in immature, ovariectomized C57BL/6 mice. Toxicol Sci 102(1):61-75. doi:10.1093/toxsci/kfm289 PMID:18042819
- Lee K, Lynd JD, O'Reilly S, Kiupel M, McCormick JJ, LaPres JJ. 2008. The biphasic role of the hypoxia-inducible factor prolyl-4-hydroxylase, PHD2, in modulating tumor-forming potential. Mol Cancer Res 6(5):829-842. doi:10.1158/1541-7786.MCR-07-2113 PMID:18505927
- Saini Y, Harkema JR, LaPres JJ. 2008. HIF1alpha is essential for normal intrauterine differentiation of alveolar epithelium and surfactant production in the newborn lung of mice. J Biol Chem 283(48):33650-33657. doi:10.1074/jbc.M805927200 PMID:18801745 PMCID:PMC2586263
- Schneider D, Manzan MA, Crawford RB, Chen W, Kaminski NE. 2008. 2,3,7,8-Tetrachlorodibenzo-p-dioxin-mediated impairment of B cell differentiation involves dysregulation of paired box 5 (Pax5) isoform, Pax5a. J Pharmacol Exp Ther 326(2):463-474. doi:10.1124/jpet.108.139857 PMID:18483191 PMCID:PMC2562000
- Schuler L, Ni Chadhain SM, Jouanneau Y, Meyer C, Zylstra GJ, Hols P, Agathos SN. 2008. Characterization of a novel angular dioxygenase from fluorene-degrading Sphingomonas sp strain LB126. Appl Environ Microbiol 74(4):1050-1057. doi:10.1128/AEM.01627-07 PMID:18156320 PMCID:PMC2258591
- Tsuneta T, Loch-Caruso R, Quensen JF, Boyd SA, Hanna M, Grindatti C. 2008. Stimulatory effects of a microbially dechlorinated polychlorinated biphenyl (PCB) mixture on rat uterine contraction in vitro. Environ Res 107(2):185-193. doi:10.1016/j.envres.2008.01.011 PMID:18359014 PMCID:PMC2699757
2007
- Bezdecny SA, Karmaus P, Roth RA, Ganey PE. 2007. 2,2',4,4'-Tetrachlorobiphenyl upregulates cyclooxygenase-2 in HL-60 cells via p38 mitogen-activated protein kinase and NF-kappaB. Toxicol Appl Pharmacol 221(3):285-294. doi:10.1016/j.taap.2007.03.019 PMID:17482227 PMCID:PMC1950673
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- Leigh MB, Pellizari VH, Uhlik O, Sutka R, Rodrigues JM, Ostrom N, Zhou J, Tiedje JM. 2007. Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs). ISME J 1(2):134-148. doi:10.1038/ismej.2007.26 PMID:18043623
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- Szabo T, Szekeres M, Dekany I, Jackers C, De Feyter S, Johnston CT, Schoonheydt RA. 2007. Layer-by-layer construction of ultrathin hybrid films with proteins and clay minerals. Journal of Physical Chemistry C 111(34):12730-12740.
- Tai M, Upham BL, Olson LK, Tsao M, Reed DN, Trosko JE. 2007. Cigarette smoke components inhibited intercellular communication and differentiation in human pancreatic ductal epithelial cells. Int J Cancer 120(9):1855-62. PMID:17266035
- Upham BL, Guzvic M, Scott J, Carbone JM, Blaha L, Coe C, Li L, Rummel AM, Trosko JE. 2007. Inhibition of gap junctional intercellular communication and activation of mitogen-activated protein kinase by tumor-promoting organic peroxides and protection by resveratrol. Nutr Cancer 57(1):38-47. PMID:17516861
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2006
- Brant KA, Loch-Caruso R. 2006. PCB 50 stimulates release of arachidonic acid and prostaglandins from late gestation rat amnion fibroblast cells. Reprod Toxicol 22(4):591-8. PMID:16713698
- Burgoon LD, Boutros PC, Dere E, Zacharewski TR. 2006. dbZach: A MIAME-compliant toxicogenomic supportive relational database. Toxicol Sci 90(2):558-68. PMID:16403854
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2005
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2004
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2003
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2002
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2000
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1999
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1998
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- Bradford SA, Abriola LM. 1998. Entrapment and dissolution of organic liquids in chemically heterogeneous porous media. In: Groundwater Quality: Remediation and Protection, Proceedings of an International Conference of the International Association of Hydrological Sciences. Tubingen, Germany. pp.pp.167-172.
- Bradford SA, Abriola LM, Rathfelder KM. 1998. Simulated entrapment and dissolution of organic liquids in chemically heterogeneous porous media. In: Enviromeet 98 - Behavior and Remediation of Nonaqueous Phase Contaminants in the Subsurface. University of California, Irvine, CA. pp.pp.7-16.
- Dukelow WR, Clemens LG. 1998. Nonhuman primate in vitro fertilization applications to toxicology. In: Proceedings of the 11th Primate Symposium, Muenster, Germany. Waxman Verlag, Muenster, Germany.
- Dybas MJ, Barcelona MJ, Bezborodnikov S, Davies S, Forney L, Kawka O, Mayotte T, Sepulveda-Torres Ld, Smalla K, Sneathen M, Tiedje JM, Voice TC, Wiggert D, Witt ME, Criddle CS. 1998. Pilot-scale evaluation of bioaugmentation for in situ remediation of a carbon tetrachloride-contaminated aquifer. Environ Sci Technol 32(22):3598-3611.
- Feyk LL, Giesy JP. 1998. Wildlife sentinels-xenoestrogen modulation of endocrine function in birds. Chapter 6. In: Principles and Processes for Evaluating Endocrine Disruptors in Wildlife. SETAC Press, Pensacola, FL.
- Fischer L, Madhukar BV, Zeng XY, Wagner MA. 1998. Activation of MAP kinases by polychlorinated biphenyls in rat insulinoma cells: correlation with insulin release. Environ Health Perspect 42:133.
- Fischer L, Seegal R, Ganey PE, Pessah IN, Kodavanti PR. 1998. Symposium overview: toxicity of non-coplanar PCBs. Toxicol Sci 41(1):49-61. doi:10.1006/toxs.1997.2386 PMID:9520341
- Gardner E, Pinnavaia TJ. 1998. On the nature of olefin oxidation catalysts derived from molybdate- and tungstate-intercalated layered double hydroxides. Catal. A: General 167:65-74.
- Giesy JP, Snyder EM. 1998. Environmental endocrine disruption in fish: Weight of the evidence. Chapter 7. In: Principles and Processes for Evaluating Endocrine Disruptors in Wildlife. SETAC Press, Pensacola, FL.
- Greenfeld CR, Wang XQ, Dukelow WR. 1998. Aroclor-1254 does not affect the IVF of cumulus-free mouse oocytes. Bull Environ Contam Toxicol 60(5):766-772. PMID:9595193
- Han SH, Yea SS, Jeon YJ, Yang K, Kaminski NE. 1998. Transforming growth factor-beta 1 (TGF-beta1) promotes IL-2 mRNA expression through the up-regulation of NF-kappaB, AP-1 and NF-AT in EL4 cells. J Pharmacol Exp Ther 287(3):1105-1112. PMID:9864299
- Hernandez O, Dukelow WR. 1998. Aroclor-1254 effects on the in vitro development of 8-cell mouse embryos. Bull Environ Contam Toxicol 60(5):773-780. PMID:9595194
- Ijdo WL, Pinnavaia TJ. 1998. Staging of organic and inorganic gallery cations in layered silicate heterostructures. Journal of Solid State Chemistry 139(2):281-289.
- Kannan K, Guruge KS, Thomas NJ, Tanabe S, Giesy JP. 1998. Butyltin residues in southern sea otters found dead along California coastal waters. Environ Sci Technol 32(9):1169-1175.
- Kannan K, Nakata H, Stafford R, Masson GR, Tanabe S, Giesy JP. 1998. Bioaccumulation and toxic potential of polychlorinated biphenyl congeners in biota collected at a superfund site contaminated with Aroclor 1268. Environ Sci Technol 32(9):1214-1221.
- Kannan K, Villenueve DA, Blankenship AL, Giesy JP. 1998. Interaction of tributyltin with 3,3',4,4',5-pentachlorobiphenyl-induced ethoxyresorufin O-deethylase activity in rat hepatoma cells. J Toxicol Environ Health A 55(5):373-384. PMID:9829560
- Kendall JJ, Brouwer A, Giesy JP. 1998. Wildlife conservation concerns and endocrine disruption in wildlife: A risk-based field and laboratory approach to assess effects. Chapter 1. In: Principles and Processes for Evaluating Endocrine Disruptors in Wildlife. SETAC Press, Pensacola, FL.
- Klasson-Wehler E, Bergman A, Auman H, Summer C, Murk T, van den Berg M, Kannan K, Giesy JP. 1998. Hydroxylated and methylsolfonyl PCBs in albatross from Midway Atoll, North Pacific Ocean. Environ Toxicol Chem 17(8):1620-1625.
- Koistinen J, Soimasuo R, Tukia K, Blankenship AL, Giesy JP. 1998. Induction of EROD activity in hepa-1 mouse hepatoma cells and estrogenicity in MCF-7 human breast cancer cells by extracts of pulp mill effluents, biosludge, and sediment exposed effluents. Toxicol Sci 17(8):1499-1507.
- Kramer VJ, Miles-Richardson S, Pierens SL, Giesy JP. 1998. Reproductive impairment and induction of alkaline-labile phosphate, a biomarker of estrogen exposure, in fathead minnows (Pimephales promelas) exposed to waterborne 17 beta-estradiol. Aquat Toxicol 40(4):335-360.
- Loconto PR, Pan Y, Kamdem P. 1998. Isolation and recovery of 2-aminoethanol , N-methyl-2-aminoethanol and N,N-dimethyl-2-aminoethanol from a copper amine aqueous matrix and from amine-treated sawdust using liquid-liquid extraction and liquid-solid extraction combined with capillary gas chromatography-ion-trap mass spectrometry. Journal of Chromatographic Science 36(6):299-305. PMID:9637017
- Madhukar BV. 1998. Modulation of protein kinases by xenobiotics. In: Toxicant-Receptor Interactions and Modulation of Gene Expression. Lippincott-Raven Publishers, Philadelphia, PA.
- Madhukar BV, Zeng XY, Fischer L. 1998. Polychlorinated biphenyls, transforming growth factor-alpha activate mitogen activated protein kinases in rat liver epithelial cells. Environ Health Perspect 42:133.
- Maltseva OV, Quensen JF, Tsoi TV, Tiedje JM. 1998. Intermediate products recently discovered to accumulate during the aerobic degradation of PCB congeners formed from anaerobic dechlorination of Aroclor 1242. In: Proceedings of the Superfund Basic Research Program: A Decade of Improving Health through Multi-Disciplinary Research. Chapel Hill, NC. pp.92.
- Maraqa MA, Zhao X, Wallace RB, Voice TC. 1998. Retardation coefficients of non-ionic organic compounds determined by batch and column techniques. Soil Science Society of America Journal 62(1):142-152.
- Mercier L, Pinnavaia TJ. 1998. A functionalized porous clay heterostructure for heavy metal ion (Hg2+) trapping. Microporous Mesoporous Mater 20:101-106.
- Mercier L, Pinnavaia TJ. 1998. Heavy metal ion adsorbents formed by the grafting of a thiol functionality to mesoporous silica molecular sieves: factors affecting Hg(II) uptake. Environ Sci Technol 32(18):2749-2754.
- Mousa MA, Ganey PE, Quensen JF, Madhukar BV, Chou K, Giesy JP, Fischer L, Boyd SA. 1998. Altered biological activity of commercial PCB mixtures due to microbial reductive dechlorination. In: Proceedings of the 17th International Symposium on Chlorinated Dioxins and Related Compounds. pp.1-5.
- Narayanan PK, Carter WO, Ganey PE, Roth RA, Voytik-Harbin SL, Robinson JP. 1998. Impairment of human neutrophil oxidative burst by polychlorinated biphenyls: inhibition of superoxide dismutase activity. J Leukoc Biol 63:216-224. PMID:9468280
- Quensen JF, Mousa MA, Boyd SA, Sanderson J, Fruese KL, Giesy JP. 1998. Reduction in aryl hydrocarbon receptor-mediated activity of polychlorinated biphenyl mixtures due to anaerobic microbial dechlorination. Environ Toxicol Chem 17(5):806-813.
- Rakhshandehroo GR, Wallace RB, Boyd SA, Voice TC. 1998. Hydraulic characteristics of organomodified soils for use in sorptive zone applications. Soil Science Society of America Journal 62(1):5-12.
- Sanderson J, Giesy JP. 1998. Functional response assays in wildlife toxicology. In: Encyclopedia of environmental analysis and remediation. Wiley-Interscience,
- Sanderson J, Kennedy SW, Giesy JP. 1998. In vitro induction of ethoxyres orufin-O-deethylase and porphyrins by halogenated aromatic hydrocarbons in avian primary hepatocytes. Environ Toxicol Chem 17(10):2006-2018.
- Sheng G, Boyd SA. 1998. Relation of water and neutral organic compounds in the interlayers of mixed Ca/trimethylphenylammonium-smectites. Clays and Clay Minerals 46(1):10-17.
- Snyder SS, Villenueve DA, Pierens SL, Nichols KM, Snyder EM, Miles-Richardson S, Blankenship AL, Giesy JP. 1998. Monitoring for Complex Mixtures of Estrogen Agonists in the Aquatic Environment. In: Proceedings of the Superfund Basic Research Program: A Decade of Improving Health through Multi-Disciplinary Research. Chapel Hill, NC.
- Tithof PK, Peters-Golden M, Ganey PE. 1998. Distinct phospholipases A2 regulate the release of arachidonic acid for eicosanoid production and superoxide anion generation in neutrophils. J Immunol 160:953-960. PMID:9551934
- Trosko JE, Chang C, Upham BL, Wilson MR. 1998. Epigenetic toxicology as toxicant-induced changes in intracellular signalling leading to altered gap junctional intercellular communication. Toxicol Lett 102-103:71-78. PMID:10022235
- Trosko JE, Ruch RJ. 1998. Cell-cell communication in carcinogenesis. Front Biosci (Landmark Ed) 3:d208-d236. PMID:9458335
- Upham BL, DeoCampo ND, Wurl B, Trosko JE. 1998. Inhibition of gap junctional intercellular communication by perfluorinated fatty acids dependent on the chain length of the fluorinated tail. Int J Cancer 78:491-495. PMID:9797139
- Upham BL, Weis LM, Trosko JE. 1998. Modulated gap junctional intercellular communication as a biomarker of PAH epigenetic toxicity: structure-function relationship. Environ Health Perspect 106:975-984. PMID:9703481
- Villenueve DA, Blankenship AL, Giesy JP. 1998. Estrogen receptors-environmental xenobiotics. Chapter 5. In: Toxicant-Receptor Interactions and Modulation of Gene Expression. Lippincott-Raven Publishers, Philadelphia, PA.
- Weber WJ, Mukherji S, Peters CA. 1998. Aqueous dissolution of the constituents of composite non-aqueous phase liquid contaminants. In: Soil and Aquifer Pollution. Springer-Verlag Publishers, Heidelberg, Germany.
- Weis LM, Rummel AM, Masten S, Trosko JE, Upham BL. 1998. Bay or bay-like regions of polycyclic aromatic hydrocarbons were potent inhibitors of gap junction intercellular communication. Environ Health Perspect 106(1):17-22.
- Yao JJ, Huang Z, Masten S. 1998. The ozonation of benzo[a]anthracene: Pathway and product identification. Water Res 32:3235-3244.
- Yao JJ, Huang Z, Masten S. 1998. The ozonation of pyrene: pathway and product identification. Water Res 32:3001-3012.
- Zwiernik MJ, Quensen JF, Boyd SA. 1998. FeSO4 Amendments stimulate extensive anaerobic PCB dechlorination. Environ Sci Technol 32:3360-3365.
1997
- Abu-El-Sha'r W, Abriola LM. 1997. Experimental assessment of gas transport mechanisms in natural porous media: Parameter evaluation. Water Resour Res 4:505-515.
- Angus WG, Mousa MA, Vargas VM, Quensen JF, Boyd SA, Contreras ML. 1997. Inhibition of L-aromatic amino acid decarboxylase by polychlorinated biphenyls. Neurotoxicology 18:857-868. PMID:9339832
- Boyd SA, Kukkadaupa R. 1997. Method of removing organic contaminants from air and water with organophilic, quaternary phosphonium ion-exchanged smectite clays.
- Bradford SA, Abriola LM, Leij FJ. 1997. Estimating wettability effects on two- and three-fluid relative permeability relations. J Contam Hydrol 28:171-191.
- Bradford SA, Abriola LM, Phelan TJ. 1997. Dissolution of residual tetrachloroethylene in fractional wettability porous media. Agronomy Abstracts: Soil Science Society of America 178.
- Bradford SA, Abriola LM, Phelan TJ. 1997. The impact of fractional wettability and grain size distribution on the long-term dissolution of residual tetrachloroethylene. Eos, Transactions, American Geophysical Union 78:F331.
- Giesy JP. 1997. Trends and implications of chlorinated hydrocarbons in the Great Lakes. In: Great Lakes Fisheries Policy and Management: A Binational Perspective. Michigan State University Press, East Lansing, MI.
- Giesy JP, Jude DJ, Tillitt DE, Gale RW, Meadows JC, Zajieck JL, Peterman PH, Verbrugge DA, Sanderson J, Schwartz TR, Tuchman ML. 1997. Polychlorinated dibenzo-p-dioxins, dibenzofurans, biphenyls and 2,3,7,8-tetrachlorodibenzo-p-dioxin equivalents in fishes from Saginaw Bay, Michigan. Environ Toxicol Chem 16(4):713-724. doi:10.1002/etc.5620160416
- Giesy JP, Kramer VJ, Bergman A, Klasson-Wehler E. 1997. Hydroxylated polychlorinated biphenyl metabolites are anti-estrogenic in a stably transfected human breast adenocarcinoma (MCF-7) cell line. In: Biotransformation in Environmental Risk Assessment. SETAC-Europe Press, Brussels, Belgium. pp.115-121.
- Gray LE, Klece WR, Wiese T, Tyl R, Gaido KW, Cook J, Klinefelter G, Desaulniers D, Wilson E, Zacharewski TR, Waller C, Foster P, Laskey J, Reel J, Giesy JP, Laws S, McLachlan JA, Breslin W, Cooper R, Di Giulio RT, Johnson R, Purdy R, Mihaich E, Safe SH, Sonnenschein C, Welshons W, Miller R, McMaster S, Colborn T. 1997. Endocrine screening methods workshop report: detection of estrogenic and androgenic hormonal and antihormonal activity for chemicals that act via receptor or steroidogenic enzyme mechanisms. Reprod Toxicol 11(5):719-750. PMID:9311581
- Hayden NJ, Voice TC, Wallace RB. 1997. Residual gasoline saturation in unsaturated soil with and without organic matter. J Contam Hydrol 25:271-281.
- Jeon YJ, Han SH, Yang K, Kaminski NE. 1997. Induction of transforming growth factor β1 transcription by carbon tetrachloride leads to the inhibition of T helper 2 cell associated lymphokines. Toxicol Appl Pharmacol 144:27-35.
- Johnson GR, Olsen RH. 1997. Multiple pathways for toluene degradation in Burkholderia sp. strain JS150. Appl Environ Microbiol 63(10):4047-4052. PMID:9327568
- Kamrin M. 1997. Environmental risk harmonization: Federal/state approaches to risk assessment and management. Regul Toxicol Pharmacol 25:158-165. PMID:9185891
- Kamrin M. 1997. Health effects of hazardous wastes. In: Standard Handbook of Hazardous Waste Treatment and Disposal, 2nd Edition. McGraw-Hill, London, England. pp.3.17-3.29.
- Kamrin M, Craigmill A, Miller T, Jenkins J, Rutz D. 1997. EXTOXNET: An internet pesticide information resource for non-specialists. In: Proceedings of the American Chemical Society National Meetings, Environmental Chemistry Division. San Francisco, CA.
- Kamrin M, Detjen J, Harry J. 1997. Improved Public Understanding of Environmental Risks Through Education and Information for Journalists. In: Proceedings of the Society for Environmental Toxicology and Chemistry Annual Meeting. San Francisco, CA.
- Kannan K, Tanabe S, Giesy JP. 1997. Organochlorine pesticides and polychlorinated biphenyls in foodstuffs from Asian and oceanic countries: contamination levels and dietary exposures. Rev Environ Contam Toxicol 152:1-55. PMID:9297984
- Kholkute SD, Dukelow WR. 1997. Effects of polychlorinated biphenyl (PCB) mixtures on in vitro fertilization in the mouse. Bull Environ Contam Toxicol 59(4):531-536. PMID:9307415
- Koistinen J, Koivusaari J, Nuuja I, Paasivarta J, Giesy JP. 1997. 2,3,7,8-tetrachlorodibenzo-p-dioxin equivalents in extracts of Baltic White-Tailed Sea Eagles. Environ Toxicol Chem 16:1533-1544.
- Kramer VJ, Helferich WG, Bergman A, Klasson-Wehler E, Giesy JP. 1997. Hydroxylated polychlorinated biphenyl metabolites are anti-estrogenic in a stably transfected human breast adenocarcinoma (MCF7) cell line. Toxicol Appl Pharmacol 144(2):363-376. doi:10.1006/taap.1997.8163 PMID:9194421
- Leahy JG, Olsen RH. 1997. Kinetics of toluene degradation by toluene-oxidizing bacteria as a function of oxygen concentration and the effect of nitrate. FEMS Microbiol Lett 23:23-30.
- Leahy JG, Olsen RH, Johnson GR. 1997. Cross-regulation of toluene monooxygenases by the transcriptional activators TbmR and TbuT. Appl Environ Microbiol 63(9):3736-3739. PMID:9293027
- Loconto PR. 1997. Extraction and the distribution ratio. LC GC 15(2):92.
- Loconto PR. 1997. Isolation and recovery of 9,10-dimethyl-1,2-benzanthracene from animal bedding by reversed-phase solid-phase extraction combined with HPLC. J Chromatogr A 774(1,2):223-227.
- Loconto PR, Voice TC. 1997. Analytical chemistry in a graduate environmental engineering program at Michigan State. In: Proceedings of the 29th Central Regional Meeting of the American Chemical Society.
- Madhukar BV, Trosko JE. 1997. The causes of cancer: implications for prevention and treatment. Indian Journal of Pediatrics 64:131-141. PMID:10771828
- Maraqa MA, Wallace RB, Voice TC. 1997. Effect of degree of water saturation on dispersivity and immobile water in sandy soil columns. J Contam Hydrol 25:199-218.
- Massol-Deya A, Weller R, Rios-Hernandez L, Zhou J, Hickey RF, Tiedje JM. 1997. Succession and convergence of biofilm communities in fixed-film reactors treating aromatic hydrocarbons in groundwater. Appl Environ Microbiol 63(1):270-276. PMID:8979355
- Masten S, Davies S. 1997. Efficacy of in situ ozonation for the remediation of PAH contaminated soils. J Contam Hydrol 28:327-335.
- Mercier L, Pinnavaia TJ. 1997. Access in mesoporous materials: advantages of a uniform pore structure in the design of a heavy metal ion adsorbent for environmental remediation. Advanced Materials 9:500-503.
- Meyer TK, Yurchak MR, Pliego JF, Wincek TJ, Dukelow WR, Kuehl TJ. 1997. Cryopreservation of marine zygotes for use in testing culture environments. Journal of the American Association for Laboratory Animal Science 47(5):496-499. PMID:9355092
- Mukherji S, Peters CA, Weber WJ. 1997. Mass transfer of polynuclear aromatic hydrocarbons (PAHs) from complex DNAPL mixtures. Environ Sci Technol 31(2):416-423.
- Olsen RH, Kukor JJ, Byrne AM, Johnson GR. 1997. Evidence for the evolution of a single component phenol/cresol hydroxylase from a multicomponent toluene monooxygenase. J Ind Microbiol Biotechnol 19(5-6):360-368. PMID:9451833
- Olsen RH, Kukor JJ, Byrne AM, Johnson GR. 1997. Recruitment of an alkyl-substituted phenol/benzene regulated system for the evolution of a unit peptide phenol hydroxylase. In: Proceedings of the VIth International Congress on Pseudomonas. pp.133.
- Peters CA, Mukherji S, Knightes CD, Weber WJ. 1997. Phase stability of multicomponent NAPLs containing PAHs. Environ Sci Technol 31(9):2540-2546.
- Quensen JF, Tiedje JM. 1997. Evaluation of PCB Dechlorination in Sediments. In: Methods in Biotechnology, V. 2: Bioremediation Protocols. Humana Press Inc, Totowa, NJ.
- Richter CA, Giesy JP, Tieber VL, Denison MS. 1997. An in vitro rainbow trout cell bioassay for AhR-mediated toxins. Environ Toxicol Chem 16:543-550.
- Rodriguez J, Kholkute SD, Dukelow WR. 1997. Reproductive toxicology of 3,3',4,4'-tetrachlorobiphenyl in mice. Bull Environ Contam Toxicol 58(6):999-1005. PMID:9136666
- Sanderson J, Janz DM, Bellward GD, Giesy JP. 1997. Effects of embryonic and adult exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin on hepatic microsomal testosterone hydroxylase activities in Great Blue Herons (Ardea herodias). Environ Toxicol Chem 16:1304-1310.
- Sheng G, Boyd SA. 1997. Organoclays/soil modification and their use in pollution prevention and environmental remediation. Nature Magz. China 19:95-104.
- Sheng G, Xu S, Boyd SA. 1997. Surface heterogeneity of trimethylphenylammonium-smectite as revealed by adsorption of aromatic hydrocarbons from water. Clays and Clay Minerals 45:659-669.
- Tithof PK, Watts S, Ganey PE. 1997. Protein tyrosine kinase involvement in the production of superoxide anion by neutrophils exposed to Aroclor 1242, a mixture of polychlorinated biphenyls. Biochem Pharmacol 53:1833-1842. PMID:9256158
- Tsai M, Webb RC, Loch-Caruso R. 1997. The increase of oxytocin-induced oscillatory contractions by 4-hydroxy-2',4',6'-trichlorobiphenyl is estrogen receptor-mediated. Biol Reprod 56(2):341-347. PMID:9116132
- Upham BL, Boddy B, Xing X, Trosko JE, Masten S. 1997. Non-genotoxic effects of selected pesticides and their disinfection by-products on gap junctional intercellular communication. Ozone: Science & Engineering 19(4):351-369.
- Upham BL, Kang K, Cho H, Trosko JE. 1997. Hydrogen peroxide inhibits gap junctional intercellular communication in glutathione sufficient but not glutathione deficient cells. Carcinogenesis 18(1):37-42. PMID:9054587
- Vethaak D, Jobling S, Waldock M, Bjerregaard P, Dickerson R, Giesy JP, Grothe D, Karbe L, Munkittrick KR, Schlumpf M, Sumpter J. 1997. Approaches for the conduct of field surveys and toxicity identification and evaluation in identifying the hazards of endocrine modulating chemicals in wildlife. In: Proceedings of the SETAC (Society of Environmental Toxicology and Chemistry)-Europe/OECD (Organisation for Economic Co-Operation and Development) Expert Workshop on (Endocrine Modulators and Wildlife: Assessment and Testing) EMWAT. SETAC-Europe, Brussels, Belgium. pp.13-23.
- Xu S, Sheng G, Boyd SA. 1997. Use of organo-clays in pollution abatement. Advances in Agronomy 59:25-61.
- Yao JJ, Masten S. 1997. The Identification of the products and reaction pathways for the ozonolysis of pyrene and benz[a]anthracene in aqueous solutions. In: Proceedings of the 13th Ozone World Congress, Oct. 20-23. Kyoto, Japan.
- Zhao X, Doh K, Criddle CS, Voice TC. 1997. Accumulation of metabolic intermediates during shock loads in biological fluidized bed reactors. J Environ Eng (New York) 123:1185-1193.
- Zhou J, Palumbo AV, Tiedje JM. 1997. Sensitive detection of a novel class of toluene-degrading denitrifiers, Azoarcus tolulyticus, with small-subunit rRNA primers and probes. Appl Environ Microbiol 63(6):2384-2390. PMID:9172359 PMCID:PMC168532
1996
- Bae J, Loch-Caruso R. 1996. Stimulation of rat uterine oscillatory contraction by a polychlorinated biphenyl mixture, Aroclor 1242, and its sustained effect after removal of the compound. Biol Reprod 54(supp.):182.
- Beavens JS, Little RA, Madhukar BV. 1996. Altered subcellular distribution of protein kinase C (PKC) isozymes in C3H 10T1/2 mouse embryo cells exposed to halogenated aromatic hydrocarbons (HAH). In: Proceedings of the 35thAnnual Meeting of the Society of Toxicology Meeting, March 10-14, 1996. Anaheim, CA.
- Benzing T, Rao P, Boyd SA. 1996. Construction and performance of a gas purge system. J Environ Qual 25:1436-1441.
- Bradford SA, Abriola LM, Vendlinski RA. 1996. Entrapment and dissolution of tetrachloroethylene in fractional wettability porous media. Eos, Transactions, American Geophysical Union 77:F274-F275.
- Brown AP, Schultze AE, Holdan W, Buchweitz JP, Roth RA, Ganey PE. 1996. Lipopolysaccharide-induced hepatic injury is enhanced by polychlorinated biphenyls. Environ Health Perspect 104(6):634-640. PMID:8793352
- Byrne AM, Olsen RH. 1996. Cascade regulation of the toluene-3-monooxygenase operon (tbuA1UBVA2C) of Burkholderia pickettii PKO1: role of the tbuA1 promoter (PtbuA1) in the expression of its cognate activator, TbuT. J Bacteriol 178(21):6327-6337. PMID:8892837 PMCID:PMC178508
- Byrne AM, Olsen RH. 1996. Nucleotide sequence analysis of tbuX, a gene encoding a putative membrane-associated protein from Burkholderia pickettii PKO1. Bacteriology Procedures
- Chee-Sanford JC, Frost JW, Fries MR, Zhou J, Tiedje JM. 1996. Evidence for acetyl coenzyme A and cinnamoyl coenzyme A in the anaerobic toluene mineralization pathway in Azoarcus tolulyticus Tol-4. Appl Environ Microbiol 62(3):964-973. PMID:8975623
- Chibwe M, Ukrainczyk L, Boyd SA, Pinnavaia TJ. 1996. Catalytic properties of biomimetic metallo macrocycles intercalated in layered double hydroxides and smectite clay: the importance of edge-site access. J Mol Catal A Chem 113:249-256.
- Chung Y, Clemens LG. 1996. The effect of postnatal exposure of polychlorinated biphenyls (Aroclor 1254) on the sexual behavior of rats. In: Proceedings of the Society for Neuroscience.
- Delaney B, Kaminski NE. 1996. Liver-Immune interactions induced by hepatic regeneration: Similarities between partial hepatectomy and chemically-mediated hepatotoxicity. In: Experimental Immunotoxicology. CRC Press Inc, Boca Raton, FL. pp.157-167.
- Dukelow WR, Greenfeld CR, Hernandez O, Clemens LG, Chung Y, Kaneene J. 1996. Toxic chemical influences on in vivo and in vitro reproduction. In: Proceedings of the Forum on Environmental Remediation & Environmental Toxicology. Lansing, MI.
- Dukelow WR, Hernandez O, Greenfeld CR, Kholkute SD. 1996. In vitro fertilization assessment of PCB effects in B6D2-F1 mice. In: Proceedings of the American Association of Laboratory Animal Science. pp.5.
- Gaither CL, Abriola LM. 1996. An experimental investigation of the volatilization of binary NAPL mixtures in unsaturated porous media. In: Proceedings of the Hazardous Substance Research Center (HSRC) / Waste-Management Education & Research Consortium Joint Conference on the Environment.
- Garrison PA, Tullis K, Aarts JM, Brouwer A, Giesy JP, Denison MS. 1996. Species-specific recombinant cell lines as bioassay systems for the detection of 2,3,7,8-tetrachlorodibenzo-p-dioxin-like chemicals. Fundam Appl Toxicol 30(2):194-203. PMID:8812265
- Giesy JP. 1996. Are Endocrine Disruptors Impacting Wildlife? A Review of the Evidence. In: Proceedings of the ILSI (International Life Sciences Institute ), Risk Science Institute, Brookings Institution and Society for Risk Analysis. Washington, DC.
- Giesy JP. 1996. Endocrine Modulation: Perspectives on Aquatic Exposure and Effects Testing. In: Proceedings of the Endocrine Modulators Forum at the 83rd Annual meeting of the Chemical Specialties Manufacturers Association. Fort Lauderdale, FL.
- Giesy JP. 1996. Hydroxylated Polychlorinated Biphenyl Metabolites are Anti-estrogenic in a stably Transfected Human Breast Adenocarcinoma (MCF-7) Cell Line. In: Proceedings of the (Society of Environmental Toxicology and Chemistry) SETAC-Europe workshop: Biotransformation in Ecological Risk Assessment. Noordwijerhout, Netherlands.
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- Giesy JP. 1996. Monitoring for Complex Mixtures of Estrogen Agonists in the Aquatic Environment: Development of Biomarkers and in vitro Assays and Determination of Effects in Fishes.
- Giesy JP. 1996. Principles for Assessing Effects on the Endocrine System: Field and Laboratory Research. In: Proceedings of a Scientific Panel Discussion on Endocrine Disruptors in the Environment. Kiawah Island, SC.
- Greenfeld CR, Hernandez O, Dukelow WR. 1996. Reproductive toxicity of a commercial PCB (Aroclor 1254) in the mouse. In: Proceedings of the Annual Research Day, Michigan State University (MSU) Department of Zoology.
- Han SH, Jeon YJ, Yang K, Kaminski NE. 1996. Induction of interleukin 2 gene expression by tranforming growth factor β1 in the murine T-cell line, EL4.IL-2. In: Proceedings of the 11th Annual Symposium on Mechanisms of Immunotoxicology. Virginia Beach, VA.
- Hayashi T, Hasler CM, Oh SY, Madhukar BV, Chang C, Trosko JE. 1996. Characterization of an in vitro human kidney epithelial system to study gap junctional intercellular communication. In Vitr Mol Toxicol 9:3-17.
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