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Program Publications: Texas A&M University: Comprehensive Tools and Models for Addressing Exposure to Mixtures During Environmental Emergency-Related Contamination Events

Superfund Research Program

Comprehensive Tools and Models for Addressing Exposure to Mixtures During Environmental Emergency-Related Contamination Events

Center Director: Ivan Rusyn
Grant Number: P42ES027704
Funding Period: 2017-2027
View this project in the NIH Research Portfolio Online Reporting Tools (RePORT)

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Publications

2024

  • Lin H, Rusyn I, Chiu WA. 2024. Assessing proarrhythmic potential of environmental chemicals using a high throughput in vitro-in silico model with human induced pluripotent stem cell-derived cardiomyocytes. ALTEX 41(1):37-49. doi:10.14573/altex.2306231 PMID:37921411
  • Wang M, Lilly K, Martin LM, Xu W, Tamamis P, Phillips TD. 2024. Adsorption and removal of polystyrene nanoplastics from water by green-engineered clays. Water Res 249:120944. doi:10.1016/j.watres.2023.120944 PMID:38070346
  • Wang M, Rivenbark K, Phillips TD. 2024. Kinetics of glyphosate and aminomethylphosphonic acid sorption onto montmorillonite clays in soil and their translocation to genetically modified corn. J Environ Sci (China) 135:669-680. doi:10.1016/j.jes.2023.02.006 PMID:37778837 PMCID:PMC10542765
  • Zhu R, Newman G, Li D. 2024. The spatial relationship between long-term vacant housing and non-communicable diseases in U.S. shrinking and growing metropolitan areas. Cities 145:104718. doi:10.1016/j.cities.2023.104718

2023

  • Aghayev Z, Szafran AT, Tran A, Ganesh HS, Stossi F, Zhou L, Mancini MA, Pistikopoulos EN, Beykal B. 2023. Machine learning methods for endocrine disrupting potential identification based on single-cell data. Chem Eng Sci 281:119086. doi:10.1016/j.ces.2023.119086 PMID:37637227 PMCID:PMC10448728
  • Aghayev Z, Walker GF, Iseri F, Ali M, Szafran AT, Stossi F, Mancini MA, Pistikopoulos EN, Beykal B. 2023. Binary classification of the endocrine disrupting chemicals by artificial neural networks. ESCAPE 52:2631-2636. doi:10.1016/b978-0-443-15274-0.50418-2 PMID:37575176 PMCID:PMC1041341
  • Anderson MJ, Valdiviezo A, Conway MH, Farrell C, Andringa RK, Janik A, Chiu WA, Rusyn I, Hamer SA. 2023. Imidacloprid exposure is detectable in over one third of wild bird samples from diverse Texas ecoregions. Sci Total Environ 876:162723. doi:10.1016/j.scitotenv.2023.162723 PMID:36907393
  • Atoba K, Newman G, Sansom G. 2023. Multi-hazard property buyouts: Making a case for the acquisition of flood and contaminant-prone residential properties in Galena Park, TX. Clim Risk Manag 41:100529. doi:10.1016/j.crm.2023.100529
  • Aurisano N, Jolliet O, Chiu WA, Judson RR, Jang S, Unnikrishnan A, Kosnik MB, Fantke P. 2023. Probabilistic points of departure and reference doses for characterizing human noncancer and developmental/reproductive effects for 10,145 cheimcals. Environ Health Perspect 131(3):37016. doi:10.1289/EHP11524 PMID:36989077 PMCID:PMC1005622
  • Baker ES. 2023. Assessing how chemical exposures affect human health. LC GC Eur 36:7-10. PMID:37900911 PMCID:PMC10611144
  • Baker ES, Hoang C, Uritboonthai W, Heyman HM, Pratt BS, MacCoss MJ, MacLean BX, Plumb R, Aisporna A, Siuzdak G. 2023. METLIN-CCS: an ion mobility spectrometry collision cross section database. Nat Methods doi:10.1038/s41592-023-02078-5 PMID:37932399
  • Cai Z, Newman G, Lee J, Ye X, Retchless D, Zou L, Ham Y. 2023. Simulating the spatial impacts of a coastal barrier in Galveston Island, Texas: a three-dimensional urban modeling approach. Geomat Nat Hazards Risk 14(1):doi:10.1080/19475705.2023.2192332
  • Cai Z, Zhu R, Ruggier E, Newman G, Horney JA. 2023. Calculating the environmental impacts of low-impact development using long-term hydrologic impact assessment: a review of model applications. Land 12(3):612. doi:10.3390/land12030612 PMID:37324780 PMCID:PMC10270665
  • Chappel JR, King ME, Fleming J, Eberlin LS, Reif DM, Baker ES. 2023. Aggregated molecular phenotype scores: Enhancing assessment and visualization of mass spectrometry imaging data for tissue-based diagnostics. Anal Chem 95(34):12913-12922. doi:10.1021/acs.analchem.3c02389 PMID:37579019
  • Chappel JR, Kirkwood-Donelson KI, Reif DM, Baker ES. 2023. From big data to big insights: statistical and bioinformatic approaches for exploring the lipidome. Anal Bioanal Chem doi:10.1007/s00216-023-04991-2 PMID:37875675
  • Cordova AC, Dodds J, Tsai H, Lloyd D, Roman-Hubers AT, Wright FA, Chiu WA, McDonald TJ, Zhu R, Newman G, Rusyn I. 2023. Application of ion mobility spectrometry-mass spectrometry for compositional characterization and fingerprinting of a library of diverse crude oil samples. Environ Toxicol Chem doi:10.1002/etc.5727 PMID:37530422
  • Cordova AC, Ford L, Valdiviezo A, Roman-Hubers AT, McDonald TJ, Chiu WA, Rusyn I. 2023. Dosing methods to enable cell-based in vitro testing of complex substances: a case study with a PAH mixture. Toxics 11(1):19. doi:10.3390/toxics11010019 PMID:36668745 PMCID:PMC9866728
  • Cordova AC, Klaren WD, Ford L, Grimm FA, Baker ES, Zhou Y, Wright FA, Rusyn I. 2023. Integrative chemical-biological grouping of complex high production volume substances from lower olefin manufacturing streams. Toxics 11(7):586. doi:10.3390/toxics11070586 PMID:37505552 PMCID:PMC10385386
  • Cuomo D, Nitcher M, Barba E, Feinberg AP, Rusyn I, Chiu WA, Threadgill DW. 2023. Refining risk estimates for lead in drinking water based on the impact of genetics and diet on blood lead levels using the Collaborative Cross mouse population. Toxicol Sci doi:10.1093/toxsci/kfad054 PMID:37243727 PMCID:PMC10375319
  • Foley MH, Walker ME, Stewart AK, O'Flaherty S, Gentry E, Patel S, Beaty VV, Allen G, Pan M, Simpson JB, Perkins C, Vanhoy ME, Dougherty MK, McGill SK, Gulati AS, Dorrestein PC, Baker ES, Redinbo MR, Barrangou R, Theriot CM. 2023. Bile salt hydrolases shape the bile acid landscape and restrict clostridioides difficile growth in the murine gut. Nat Microbiol doi:10.1038/s41564-023-01337-7 PMID:36914755 PMCID:PMC10066039
  • Gharaibeh N, Lee CB, Alhalbouni T, Wang F, Lee J, Newman G, Guneralp B, Van Zandt S. 2023. Quality of stormwater infrastructure systems in vulnerable communities: three case studies from Texas. Public Works Manag Policy 28(4):518-536. doi:10.1177/1087724x231164415 PMID:37719107 PMCID:PMC10503941
  • Hui RH, Abimbola O, Walter S, Galen N. 2023. Geodesign for multi-scalar consensus: lessons from flood adaptation pathways planning. Landsc Res Rec 11:72-84. PMID:37324360 PMCID:PMC10270704
  • Jang S, Shao K, Chiu WA. 2023. Beyond the cancer slope factor: Broad application of Bayesian and probabilistic approaches for cancer dose-response assessment. Environ Int 175:107959. doi:10.1016/j.envint.2023.107959 PMID:37182419
  • Kirkwood-Donelson KI, Dodds J, Schnetzer A, Hall N, Baker ES. 2023. Uncovering per- and polyfluoroalkyl substances (PFAS) with nontargeted ion mobility spectrometry-mass spectrometry analyses. Sci Adv 9(43):eadj7048. doi:10.1126/sciadv.adj7048 PMID:37878714 PMCID:PMC10599621
  • Lee R, Tao Z, Prybutok S, Jang S, Dalaijamts C, Chiu WA, Newman G. 2023. Unseen risk: Mapping contamination hazards to enhance risk perception in Galena Park, Texas. Clim Risk Manag 41:100532. doi:10.1016/j.crm.2023.100532
  • Lewis PT, Chiu WA, Nasser E, Proville J, Barone A, Danforth C, Kim B, Prozzi J, Craft ES. 2023. Characterizing vulnerabilities to climate change across the United States. Environ Int 172:107772. doi:10.1016/j.envint.2023.107772 PMID:36731185 PMCID:PMC10214772
  • Li D, Zhang Y, Li X, Lu Y, Brown RD. 2023. Climatic and meteorological exposure and mental and behavioral health: A systematic review and meta-analysis. Sci Total Environ 892:164435. doi:10.1016/j.scitotenv.2023.164435 PMID:37257626
  • Lin H, Chiu WA. 2023. Development of physiologically-based gut absorption model for probabilistic prediction of environmental chemical bioavailability. ALTEX 40(3):471-484. doi:10.14573/altex.2210031 PMID:37158362
  • Lu E, Grimm FA, Rusyn I, Saeger SD, De Boevre M, Chiu WA. 2023. Advancing probabilistic risk assessment by integrating human biomonitoring, new approach methods, and Bayesian modeling: A case study with the mycotoxin deoxynivalenol. Environ Int 182:108326. doi:10.1016/j.envint.2023.108326 PMID:38000237
  • Lynch MT, Lay CR, Sokolinski S, Antezana A, Ghio C, Chiu WA, Rogers RD. 2023. Community-facing toxicokineticmodels to estimate PFAS serum levels based on life history and drinking water exposures. Environ Int 176:107974. doi:10.1016/j.envint.2023.107974 PMID:37245445
  • Newman G, Lee C, Van Zandt S, Ye X, Jourdan D. 2023. Toward a unifying definition and approach for quantifying urban policy performance. J Plan Educ Res 42(4):510-511. doi:10.1177/0739456x221120414 PMID:37153854 PMCID:PMC1016270
  • Oladeji O, Saitas M, Mustapha T, Johnson N, Chiu WA, Rusyn I, Robinson AL, Presto AA. 2023. Air pollutant patterns and human health risk following the East Palestine, Ohio, train derailment. Environ Sci Technol Lett 10(8):680-685. doi:10.1021/acs.estlett.3c00324 PMID:37577363 PMCID:PMC10413936
  • Perez Gomez AA, Wang M, Kochan K, Amstalden K, Young CR, Welsh CJ, Phillips TD, Brinkmeyer-Langford CL. 2023. C57BL/6J mice exposed to perfluorooctanoic acid demonstrate altered immune responses and increased seizures after Theiler's murine encephalomyelitis virus infection. Front Immunol 14:1228509. doi:10.3389/fimmu.2023.1228509 PMID:37600798 PMCID:PMC10434537
  • Sakolish C, Moyer HL, Tsai H, Ford L, Dickey AN, Wright FA, Han G, Bajaj P, Baltazar MT, Carmichael PL, Stanko JP, Ferguson SS, Rusyn I. 2023. Analysis of reproducibility and robustness of a renal proximal tubule microphysiological system OrganoPlate 3-lane 40 for in vitro studies of drug transport and toxicity. Toxicol Sci doi:10.1093/toxsci/kfad080 PMID:37555834
  • Stewart AK, Foley MH, Dougherty MK, McGill SK, Gulati AS, Gentry E, Hagey LR, Dorrestein PC, Theriot CM, Dodds J, Baker ES. 2023. Using multidimensional separations to distinguish isomeric amino acid-bile acid conjugates and assess their presence and perturbations in model systems. Anal Chem 95(41):15357-15366. doi:10.1021/acs.analchem.3c03057 PMID:37796494
  • Tantengco OA, Vidal MS, Cosi GF, Menon R. 2023. Impact of bisphenol A on cell viability and inflammatory cytokine production in human cervical epithelial cells. Am J Reprod Immunol 90(5):e13784. doi:10.1111/aji.13784 PMID:37881122 PMCID:PMC10607601
  • Thomson H, Zeff HB, Kleiman R, Sebastian A, Characklis GW. 2023. Systemic financial risk arising from residential flood losses. Earth Future 11(4):e2022EF003206. doi:10.1029/2022ef003206 PMID:37151608 PMCID:PMC1016278
  • Tsai H, House JS, Wright FA, Chiu WA, Rusyn I. 2023. A tiered testing strategy based on in vitro phenotypic and transcriptomic data for selecting representative petroleum UVCBs for toxicity evaluation in vivo. Toxicol Sci doi:10.1093/toxsci/kfad041 PMID:37079747 PMCID:PMC10230285
  • Wang M, Phillips TD. 2023. Green-engineered barrier creams with montmorillonite-chlorophyll clays as adsorbents for benzene, toluene, and xylene. Separations 10(4):237. doi:10.3390/separations10040237 PMID:37251084 PMCID:PMC10214870
  • Wang M, Phillips TD. 2023. Lecithin-amended montmorillonite clays enhance the antibacterial effect of barrier creams. Colloids Surf B Biointerfaces 229:113450. doi:10.1016/j.colsurfb.2023.113450 PMID:37451226
  • Ye X, Du J, Newman G, Retchless D, Zou L, Ham Y, Cai Z. 2023. Developing human-centered urban digital twins for community infrastructure resilience: a research agenda. J Plan Lit 38(2):187-199. doi:10.1177/08854122221137861 PMID:37153810 PMCID:PMC10162701
  • Zhu R, Newman G, Han S, Kaihatu JM, Wang T. 2023. An adaptive toolkit for projecting the impact of green infrastructure provisions on stormwater runoff and pollutant land - a case study on the city of Galena Park, Texas, USA. Landsc Archit Front 11(2):72-87. doi:10.15302/J-LAF-1-040031

2022

  • Abrahamsson DP, Siddharth A, Robinson JF, Soshilov AA, Elmore S, Cogliano VJ, Ng CA, Khan EM, Ashton R, Chiu WA, Fung J, Zeise L, Woodruff TJ. 2022. Modeling the transplacental transfer of small molecules using machine learning: a case study on perand polyfluorinated substances (PFAS). J Expo Sci Environ Epidemiol 32(6):doi:10.1038/s41370-022-00481-2 PMID:36207486 PMCID:PMC9742309
  • Aeppli C, Mitchell DA, Keyes P, Beirne EC, McFarlin KM, Roman-Hubers AT, Rusyn I, Prince RC, Zhao L, Parkerton TF, Nedwed T. 2022. Oil irradiation experiments document changes in oil properties, molecular composition, and dispersant effectiveness associated with oil photo-oxidation. Environ Sci Technol 56:doi:10.1021/acs.est.1c06149 PMID:35605020
  • Beykal B, Avraamidou S, Pistikopoulos EN. 2022. Data-driven optimization of mixed-integer bi-level multi-follower integrated planning and scheduling problems under demand uncertainty. Computers & Chemical Engineering 156:107551. doi:10.1016/j.compchemeng.2021.107551 PMID:34720250 PMCID:PMC8553017
  • Beykal B, Diangelakis NA, Pistikopoulos EN. 2022. Continuous-time surrogate models for data-driven dynamic optimization. ESCAPE 51:205-210. doi:10.1016/b978-0-323-95879-0.50035-7 PMID:36622647 PMCID:PMC9823268
  • Bhandari S, Casillas GA, Aly NA, Zhu R, Newman G, Wright FA, Miller A, Adler G, Rusyn I, Chiu WA. 2022. Spatial and temporal analysis of impacts of Hurricane Florence on criteria air pollutants and air toxics in eastern North Carolina. Int J Environ Res Public Health 19(3):doi:10.3390/ijerph19031757 PMID:35162780 PMCID:PMC8835244
  • Bilbao A, Gibbons BC, Stow SM, Kyle AD, Bloodsworth KJ, Payne SH, Smith RD, Ibrahim YM, Baker ES, Fjeldsted JC. 2022. A preprocessing tool for enhanced ion mobility-mass spectrometry-based omics workflows. J Proteome Res 21:798-807. doi:10.1021/acs.jproteome.1c00425 PMID:34382401 PMCID:PMC8837709
  • Bilbao A, Munoz N, Kim J, Orton DJ, Gao Y, Poorey K, Pomraning KR, Weitz KK, Burnet MC, Nicora CD, Wilton R, Deng S, Dai Z, Oksen E, Gee A, Fasani RA, Tsalenko A, Tanjore D, Gardner J, Smith RD, Michener JK, Gladden JM, Baker ES, Petzold CJ, Kim Y, Apffel A, Magnuson JK, Burnum-Johnson KE. 2022. PeakDecoder: A machine learning-based identification algorithm for multidimensional mass spectrometry measurements and its application for synthetic biology. Nat Commun
  • Blanchette A, Burnett SD, Rusyn I, Chiu WA. 2022. A tiered approach to population-based in vitro testing for cardiotoxicity: Balancing estimates of potency and variability. J Pharmacol Toxicol Methods 114:doi:10.1016/j.vascn.2022.107154 PMID:34999233 PMCID:PMC8930538
  • Boysen G, Rusyn I, Chiu WA, Wright FA. 2022. Characterization of population variability of 1,3-butadiene derived protein adducts in humans and mice. Regul Toxicol Pharmacol doi:10.1016/j.yrtph.2022.105171 PMID:35469930
  • Butler KE, Baker ES. 2022. A high-throughput ion mobility spectrometry-mass spectrometry screening method for opioid profiling. J Am Soc Mass Spectrom 33(10):1904-1913. doi:10.1021/jasms.2c00186 PMID:36136315
  • Butler KE, Dodds J, Flick T, Campuzano ID, Baker ES. 2022. High-resolution demultiplexing (HRdm) ion mobility spectrometry-mass spectrometry for aspartic and isoaspartic acid determination and screening. Anal Chem doi:10.1021/acs.analchem.1c05533 PMID:35421308
  • Chiu WA, Lynch MT, Lay CR, Antezana A, Malek P, Sokolinski S, Rogers RD. 2022. Bayesian estimation of human population toxicokinetics of PFOA, PFOS, PFHxS, and PFNA from studies of contaminated drinking water. Environ Health Perspect 130(12):127001. doi:10.1289/EHP10103 PMID:36454223 PMCID:PMC9714558
  • Dodds J, Wang L, Patti GJ, Baker ES. 2022. Combining isotopologue workflows and simultaneous multidimensional separations to detect, identify, and validate metabolites in untargeted analyses. Anal Chem doi:10.1021/acs.analchem.1c04430 PMID:35089687 PMCID:PMC8934380
  • Doyle MG, Odenkirk MT, Stewart AK, Nelson JP, Baker ES, De La Cruz F. 2022. Assessing the fate of dissolved organic compounds in landfill leachate and wastewater treatment systems. ACS ES&T Wat doi:10.1021/acsestwater.2c00320
  • Du J, Ye X, Newman G, Retchless D. 2022. Network science-based urban forecast dashboard. ARIC
  • Fawkes L, McDonald TJ, Roh T, Chiu WA, Taylor RJ, Sansom G. 2022. A participatory-based research approach for assessing exposure to lead-contaminated drinking water in the Houston neighborhood of the Greater Fifth Ward. Int J Environ Res Public Health 19(13):doi:10.3390/ijerph19138135
  • Ford L, Jang S, Chen Z, Zhou Y, Gallins P, Wright FA, Chiu WA, Rusyn I. 2022. A population-based human in vitro approach to quantify inter-individual variability in responses to chemical mixtures. Toxics 10(8):441. doi:10.3390/toxics10080441 PMID:36006120
  • Foster MR, Rainey M, Watson C, Dodds J, Kirkwood KI, Fernandez FM, Baker ES. 2022. Uncovering PFAS and other xenobiotics in the dark metabolome using ion mobility spectrometry, mass defect analysis, and machine learning. Environ Sci Technol 56:doi:10.1021/acs.est.2c00201 PMID:35653285 PMCID:PMC9474714
  • Gentry E, Collins S, Panitchpakdi M, Belda-Ferre P, Stewart AK, Wang M, Jarmusch A, Avila-Pacheco J, Plichta D, Aron A, Vlamakis H, Ananthakrishnan AN, Clish C, Xavier R, Baker ES, Patterson A, Knight R, Siegel D. 2022. Synthesis-based reverse metabolomics approach for the discovery of chemical structures from humans and animals. Nature PMID:38052229
  • Gordon CA, Pistikopoulos EN. 2022. Data-driven and safety-aware holistic production planning. J Loss Prev Process Ind 77:104754. doi:10.1016/j.jlp.2022.104754
  • Hearon S, Orr AA, Moyer H, Wang M, Tamamis P, Phillips TD. 2022. Montmorillonite clay-based sorbents decrease the bioavailability of per-and polyfluoroalkyl substances (PFAS) from soil and their translocation to plants. Environ Res 205:doi:10.1016/j.envres.2021.112433 PMID:34875259 PMCID:PMC8760172
  • House JS, Dalzell A, Kuchi S, Zhang S, Lenz K, Boogard PJ, Ketelslegers HB, Gant TW, Rusyn I, Wright FA, Grimm FA, Klaren WD. 2022. Grouping of UVCB substances with dose-response transcriptomics data from human cell-based assays. ALTEX doi:10.14573/altex.2107051 PMID:35288757
  • Jang S, Ford L, Rusyn I, Chiu WA. 2022. Cumulative risk meets inter-individual variability: probabilistic concentration addition of complex mixture exposures in a population-based human in vitro model. Toxics 10(10):549. doi:10.3390/toxics10100549 PMID:36287830 PMCID:PMC9611413
  • Kato Y, Lim AY, Sakolish C, Valdiviezo A, Moyer HL, Hewitt P, Bajaj P, Han G, Rusyn I. 2022. Analysis of reproducibility and robustness of OrganoPlate 2-lane 96, a liver microphysiological system for studies of pharmacokinetics and toxicological assessment of drugs. Toxicol Vitro doi:10.1016/j.tiv.2022.105464 PMID:36057418 PMCID:PMC10015056
  • Kim I, Kaihatu JM. 2022. A modified frequency distribution function of wave-breaking-induced energy dissipation. J Geophys Res Oceans doi:10.1029/2022JC018792
  • Kirkwood KI, Dodds J, Baker ES. 2022. An investigation into the presence and migration of perfluoroalkyl substances in nonstick cookware advertised as PFAS-free. Environ Sci Technol
  • Kirkwood KI, Fleming J, Nguyen H, Reif DM, Baker ES, Belcher SM. 2022. Utilizing pine needles to temporally and spatially profile per- and polyfluoroalkyl substances (PFAS). Environ Sci Technol 56:3441-3451. doi:10.1021/acs.est.1c06483 PMID:35175744
  • Kirkwood KI, Pratt BS, Shulman N, Tamura K, MacCoss MJ, MacLean BX, Baker ES. 2022. Utilizing Skyline to analyze lipidomics data containing liquid chromatography, ion mobility spectrometry and mass spectrometry dimensions. Nat Protoc doi:10.1038/s41596-022-00714-6 PMID:35831612
  • Kirsch KR, McDonald TJ, Newman G, Xu X, Horney JA. 2022. Surveys of community garden affiliates and soils in Houston, Texas. Environ Monit Assess 194:330. doi:10.1007/s10661-022-09997-4 PMID:35384492
  • Kirsch KR, Newman G, Zhu R, McDonald TJ, Xu X, Horney JA. 2022. Applying and integrating urban contamination factors into community garden sitting. J Geovis Spat Anal 6(33):doi:10.1007/s41651-022-00129-7
  • Kowalczewski A, Sakolish C, Hoang P, Liu X, Jacquir S, Rusyn I, Ma Z. 2022. Integrating nonlinear analysis and machine learning for human induced pluripotent stem cell-based drug cardiotoxicity testing. J Tissue Eng Regen Med doi:10.1002/term.3325 PMID:35621199
  • Krewski D, Saunders-Hastings P, Baan R, Barton-Maclaren TS, Browne P, Chiu WA, Gwinn M, Hartung T, Kraft AD, Lam J, Lewis R, Sanaa M, Morgan RL, Paoli GM, Rhomberg L, Rooney AA, Sand S, Schunemann HJ, Straif K, Thayer KA, Tsaioun K. 2022. Development of an evidence-based risk assessment framework. ALTEX Vol.39No.4:667693. doi:10.14573/altex.2004041
  • Lee J, Newman G. 2022. Predicting detached housing vacancy: A multilevel analysis. Sustainability 14(2):922. doi:10.3390/su14020922
  • Martin LM, Sheng J, Zimba PV, Zhu L, Fadare OO, Haley C, Wang M, Phillips TD, Conkle J, Xu W. 2022. Testing an iron oxide nanoparticle-based method for magnetic separation of nanoplastics and microplastics from water. Nanomaterials 12(14):PMID:35889573
  • Newman G, Li D, Park Y. 2022. The relationships between neighbourhood vacancy, probable PTSD, and health-related quality of life in flood-disaster-impacted communities. Urban Stud doi:10.1177/00420980221083101
  • Newman G, Sansom G, Yu S, Kirsch KR, Li D, Kim Y, Horney JA, Kim G, Musharrat S. 2022. A framework for evaluating the effects of green infrastructure in mitigating pollutant transferal and flood events in Sunnyside, Houston, TX. Sustainability 14(7):4247. doi:10.3390/su14074247
  • Newman G, Zhenhang C, Horney JA, Wuqi L. 2022. Reducing threats from contamination and flood damage: Restoring the Brandywine Creek Edge in Wilmington, Delaware, USA. Landsc Archit Front 10(1):PMID:37152358 PMCID:PMC10162708
  • Odenkirk MT, Horman BM, Dodds J, Patisaul HB, Baker ES. 2022. Combining micropunch histology and multidimensional lipidomic measurements for in-depth tissue mapping. ACS Meas Sci Au 2(1):67-75. doi:10.1021/acsmeasuresciau.1c00035 PMID:35647605 PMCID:PMC9139744
  • Rainey M, Watson C, Asef CK, Foster MR, Baker ES, Fernandez FM. 2022. CCS predictor 2.0: an open-source Jupyter notebook tool for filtering out false positives in metabolomics. Anal Chem 94(50):17456-17466. doi:10.1021/acs.analchem.2c03491 PMID:36473057 PMCID:PMC9772062
  • Rivenbark K, Wang M, Lilly K, Tamamis P, Phillips TD. 2022. Development and characterization of chlorophyll-amended montmorillonite clays for the adsorption and detoxification of benzene. Water Res 221:doi:10.1016/j.watres.2022.118788
  • Roman-Hubers AT, Aeppli C, Dodds J, Baker ES, McFarlin KM, Letinski DJ, Zhao L, Mitchell DA, Parkerton TF, Prince RC, Nedwed T, Rusyn I. 2022. Temporal chemical composition changes in water below a crude oil slick irradiated with natural sunlight. Mar Pollut Bull 185:114360. doi:10.1016/j.marpolbul.2022.114360 PMID:36413931
  • Roman-Hubers AT, Cordova AC, Rohde A, Chiu WA, McDonald TJ, Wright FA, Dodds J, Baker ES, Rusyn I. 2022. Characterization of compositional variability in petroleum substances. Fuel 317:doi:10.1016/j.fuel.2022.123547 PMID:35250041 PMCID:PMC8896784
  • Rusyn I, Chiu WA. 2022. Decision-Making with New Approach Methodologies: Time to Replace Default Uncertainty Factors with Data. Toxicol Sci doi:10.1093/toxsci/kfac033 PMID:35404442
  • Rusyn I, Chiu WA, Wright FA. 2022. Model systems and organisms for addressing inter- and intra-species variability in risk assessment. Regul Toxicol Pharmacol 132:105197. doi:10.1016/j.yrtph.2022.105197 PMID:35636685
  • Sakolish C, Georgescu A, Huh DD, Rusyn I. 2022. A model of human small airway on a chip for studies of subacute effects of inhalation toxicants. Toxicol Sci 187(2):267-278. doi:10.1093/toxsci/kfac036 PMID:35357501
  • Sansom G, Fawkes L, Thompson C, Losa LM, McDonald TJ, Chiu WA. 2022. Cancer risk associated with soil distribution of polycyclic aromatic hydrocarbons within three environmental justice neighborhoods in Houston, Texas. Environ Geochem Health doi:10.1007/s10653-022-01245-5 PMID:35246781
  • Sansom G, Thompson C, Sansom L, Fawkes L, Boerlin E. 2022. Compounding impacts of hazard exposures on mental health in Houston, TX. Nat Hazards Rev 111:2809-2818. doi:10.1007/s11069-021-05158-x
  • Sarnosky K, Benden M, Sansom G, Cizmas LH, Regan A. 2022. Impact of workplace displacement during a natural disaster on computer performance metrics: A 2-year interrupted time series analysis. WORK 71(2):465-470. doi:10.3233/WOR-210707 PMID:35095008 PMCID:PMC8925109
  • Shao K, Ji C, Chiu WA. 2022. Using prior toxicological data to support dose-response assessment-identifying plausible prior distributions for dichotomous dose-response models. Environ Sci Technol 56(22):16506-16516. doi:10.1021/acs.est.2c05872 PMID:36279400
  • Song Y, Newman G, Huang X, Ye X. 2022. Factors influencing long-term city park visitations for mid-sized US cities: A big data study using smartphone user mobility. Sustain Cities Soc 80:103815. doi:10.1016/j.scs.2022.103815
  • Stone KW, Felkner M, Garza E, Perez-Patron M, Schmit C, McDonald TJ, Horney JA. 2022. Changes to timeliness and completeness of infectious disease reporting in Texas after implementation of an epidemiologic capacity program. Public Health Rep 137:679-686. doi:10.1177/00333549211009490 PMID:33930278 PMCID:PMC9257493
  • Stossi F, Singh PK, Mistry R, Johnson H, Dandekar RD, Mancini MG, Szafran AT, Rao A, Mancini MA. 2022. Quality control for single cell imaging analytics using endocrine disruptor-induced changes in estrogen receptor expression. Environ Health Perspect 130(2):27008. doi:10.1289/EHP9297 PMID:35167326 PMCID:PMC8846386
  • Valdiviezo A, Brown GE, Michell AR, Trinconi CM, Bodke VV, Khetani SR, Luo Y, Chiu WA, Rusyn I. 2022. Reanalysis of trichloroethylene and tetrachloroethylene metabolism to glutathione conjugates using human, rat, and mouse liver in vitro models to improve precision in risk characterization. Environ Health Perspect 130(11):117009. doi:10.1289/EHP12006 PMID:36445294 PMCID:PMC9707501
  • Valdiviezo A, Kato Y, Baker ES, Chiu WA, Rusyn I. 2022. Evaluation of metabolism of a defined pesticide mixture through multiple in vitro liver models. Toxics 10(10):566. doi:10.3390/toxics10100566 PMID:36287846 PMCID:PMC9609317
  • Van Zandt S, Newman G, Lee C, Jourdan D, Ye X. 2022. Engaged research: inviting residents into the scientific process. J Plan Educ Res 42(3):258-259. doi:10.1177/0739456x221105048 PMID:37151851
  • Wang M, Phillips TD. 2022. Inclusion of montmorillonite clays in environmental barrier formulations to reduce skin exposure to water-soluble chemicals from polluted water. ACS Appl Mater Interfaces doi:10.1021/acsami.2c04676 PMID:35536196
  • Wang W, Zhou Y. 2022. A double penalty model for ensemble learning. Mathematics 10(23):4532. doi:10.3390/math10234532
  • Zhou Y, Gallins P, Etheridge AS, Jima DD, Scholl EH, Wright FA, Innocenti F. 2022. A resource for integrated genomic analysis of the human liver. Sci Rep 12(1):15151. doi:10.1038/s41598-022-18506-z PMID:36071064 PMCID:PMC9452507

2021

  • Alves VM, Auerbach SS, Kleinstreuer N, Rooney JP, Muratov EN, Rusyn I, Tropsha A, Schmitt CJ. 2021. Curated data in - trustworthy in silico models out: The impact of data quality on the reliability of artificial intelligence models as alternatives to animal testing. Altern Lab Anim 49(3):doi:10.1177/02611929211029635 PMID:34233495 (ahead of print)
  • Aly NA, Dodds J, Luo Y, Grimm FA, Foster MR, Rusyn I, Baker ES. 2021. Utilizing ion mobility spectrometry-mass spectrometry for the characterization and detection of persistent organic pollutants and their metabolites. Anal Bioanal Chem 414(3):doi:10.1007/s00216-021-03686-w PMID:34668045 (ahead of print)
  • Anklam E, Bahl MI, Ball R, Beger RD, Cohen J, Fitzpatrick S, Girard P, Halamoda-Kenzaoui B, Hinton D, Hirose A, Hoeveler A, Honma M, Hugas M, Ishida S, Kass GE, Kojima H, Krefting I, Liachenko S, Liu Y, Masters S, Marx U, McCarthy T, Mercer T, Patri A, Pelaez C, Pirmohamed M, Platz S, Ribeiro AJ, Rodricks JV, Rusyn I, Salek RM, Schoonjans R, Silva P, Svendsen CN, Sumner S, Sung K, Tagle DA, Tong L, Tong W, Van den Eijnden-van Raaij J, Vary N, Wang T, Waterton J, Wang M, Wen H, Wishart D, Yuan Y, Slikker W. 2021. Emerging technologies and their impact on regulatory science. Exp Biol Med (Maywood) 75:doi:10.1177/15353702211052280 PMID:34783606
  • Atoba K, Newman G, Brody SD, Highfield WE, Kim Y, Juan A. 2021. Buy them out before they are built: evaluating the proactive acquisition of vacant land in flood-prone areas. Environ Conserv 48(2):doi:10.1017/s0376892921000059 PMID:34887609 PMCID:PMC8653987
  • Beykal B, Avraamidou S, Pistikopoulos EN. 2021. Bi-level mixed-integer data-driven optimization of integrated planning and scheduling problems. ESCAPE 50:1707-1713. doi:10.1016/b978-0-323-88506-5.50265-5 PMID:34414400 PMCID:PMC8370828
  • Bolt MJ, Singh PK, Obkirchner CE, Powell R, Mancini MG, Szafran AT, Stossi F, Mancini MA. 2021. Endocrine disrupting chemicals differentially alter intranuclear dynamics and transcriptional activation of estrogen receptor-(alpha). iScience 24(11):103227. doi:10.1016/j.isci.2021.103227 PMID:34712924 PMCID:PMC8529556
  • Burnett SD, Blanchette A, Chiu WA, Rusyn I. 2021. Cardiotoxicity hazard and risk characterization of ToxCast chemicals using human induced pluripotent stem cell-derived cardiomyocytes from multiple donors. Chem Res Toxicol 34(9):2110-2124. doi:10.1021/acs.chemrestox.1c00203 PMID:34448577
  • Burnett SD, Blanchette A, Chiu WA, Rusyn I. 2021. Human induced pluripotent stem cell (iPSC)-derived cardiomyocytes as an in vitro model in toxicology: Strengths and weaknesses for hazard identification and risk characterization. Expert Opin Drug Metab Toxicol 17(8):1-16. doi:10.1080/17425255.2021.1894122 PMID:33612039 (ahead of print)
  • Burnett SD, Karmakar M, Murphy WJ, Chiu WA, Rusyn I. 2021. A new approach method for characterizing inter-species toxicodynamic variability. J Toxicol Environ Health A 84(24):doi:10.1080/15287394.2021.1966861 PMID:34427174 (ahead of print)
  • Butler KE, Takinami Y, Rainczuk A, Baker ES, Roberts BR. 2021. Utilizing ion mobility-mass spectrometry to investigate the unfolding pathway of Cu/Zn superoxide dismutase. Front Chem 9:614595. doi:10.3389/fchem.2021.614595 PMID:33634076 PMCID:PMC7900566
  • Camargo K, Foster M, Buckingham B, McDonald TJ, Chiu WA. 2021. Characterizing baseline legacy chemical contamination in urban estuaries for disaster-research through systematic evidence mapping: A case study. Chemosphere 281:doi:10.1016/j.chemosphere.2021.130925 (ahead of print)
  • Camargo K, Vogelbein MA, Horney JA, Dellapenna TM, Knap A, Sericano JL, Wade TL, McDonald TJ, Chiu WA, Unger M. 2021. Biosensor applications in contaminated estuaries: Implications for disaster research response. Environ Res 204:111893. doi:10.1016/j.envres.2021.111893 PMID:34419473 PMCID:PMC8639622
  • Casillas GA, Johnson N, Chiu WA, Ramirez J, McDonald TJ, Horney JA. 2021. Polycyclic aromatic hydrocarbons in Houston parks after Hurricane Harvey. Environ Justice 14(4):277-287. doi:10.1089/env.2020.0073 PMID:34484557 PMCID:PMC8404169
  • Chen Z, Jang S, Kaihatu JM, Zhou Y, Wright FA, Chiu WA, Rusyn I. 2021. Potential human health hazard of post-Hurricane Harvey sediments in Galveston Bay and Houston Ship Channel: A case study of using in vitro bioactivity data to inform risk management decisions. Int J Environ Res Public Health 18:doi:10.3390/ijerph182413378 PMID:34948986 PMCID:PMC8702027
  • Chen Z, Lloyd D, Zhou Y, Chiu WA, Wright FA, Rusyn I. 2021. Risk characterization of environmental samples using in vitro bioactivity and polycyclic aromatic hydrocarbon (PAH) concentrations data. Toxicol Sci 179(1):108-120. doi:10.1093/toxsci/kfaa166 PMID:33165562 PMCID:PMC7797768
  • Dalaijamts C, Cichocki JA, Luo Y, Rusyn I, Chiu WA. 2021. Quantitative characterization of population-wide tissue- and metabolite-specific variability in perchloroethylene toxicokinetics in male mice. Toxicol Sci 182(2):doi:10.1093/toxsci/kfab057 PMID:33988684 (ahead of print)
  • Dellapenna TM, Hoelscher C, Hill L, Critides L, Salgado (Bartlett) V, Bell M, Al Mukaimi ME, Du J, Park K, Knap A. 2021. Hurricane Harvey delivered a massive load of mercury-rich sediment to Galveston Bay, TX, USA. Estuaries Coasts 17:doi:10.1007/s12237-021-00990-7
  • Dodds J, Alexander NL, Kirkwood KI, Foster MR, Hopkins ZR, Knappe D, Baker ES. 2021. From Pesticides to Per- and Polyfluoroalkyl Substances: An Evaluation of Recent Targeted and Untargeted Mass Spectrometry Methods for Xenobiotics. Anal Chem 93:641-656. doi:10.1021/acs.analchem.0c04359 PMID:33136371
  • Dodds J, Baker ES. 2021. Improving the speed and selectivity of newborn screening using ion mobility spectrometry-mass spectrometry. Anal Chem 93:17094-17102. doi:10.1021/acs.analchem.1c04267 PMID:34851605 PMCID:PMC8730783
  • Erber L, Goodman S, Wright FA, Chiu WA, Tretyakova N, Rusyn I. 2021. Intra- and inter-species variability in urinary N7-(1-hydroxy-3-buten-2-yl)guanine adducts following inhalation exposure to 1,3-butadiene. Chem Res Toxicol 34(11):2375-2383. doi:10.1021/acs.chemrestox.1c00291 PMID:34726909 PMCID:PMC8715497
  • Fantke P, Chiu WA, Aylward L, Judson RR, Huang L, Jang S, Gouin T, Rhomberg L, Aurisano N, McKone TE, Jolliet O. 2021. Exposure and toxicity characterization of chemical emissions and chemicals in products: Global recommendations and implementation in USEtox. Int J Life Cycle Assess 17:doi:10.1007/s11367-021-01889-y
  • Fawkes L, Sansom G. 2021. Preliminary study of lead-contaminated drinking water in public parks- an assessment of equity and exposure risks in two Texas communities. Int J Environ Res Public Health 18(12):6443. doi:10.3390/ijerph18126443 PMID:34198670 PMCID:PMC8296270
  • Ganesh HS, Beykal B, Szafran AT, Stossi F, Zhou L, Mancini MA, Pistikopoulos EN. 2021. Predicting the estrogen receptor activity of environmental chemicals by single-cell image analysis and data-driven modeling. ESCAPE 50:481-486. doi:10.1016/b978-0-323-88506-5.50076-0 PMID:34355221 PMCID:PMC8331057
  • Gloeckner PB, Campbell-Salome GM, Waag BE, Horney JA, Rauscher EA. 2021. Resident perspectives of environmental health risk exposures after Hurricane Harvey. J Environ Stud Sci doi:10.1007/s13412-021-00674-5
  • Gordon CA, Pistikopoulos EN. 2021. Data-driven prescriptive maintenance toward fault-tolerant multiparametric control. AIChE Journal 12:doi:10.1002/aic.17489
  • Hearon S, Wang M, McDonald TJ, Phillips TD. 2021. Decreased bioavailability of aminomethylphosphonic acid (AMPA) in genetically modified corn with activated carbon or calcium montmorillonite clay inclusion in soil. J Environ Sci (China) 100:131-143. doi:10.1016/j.jes.2020.06.029 PMID:33279026 PMCID:PMC7719843
  • House JS, Grimm FA, Klaren WD, Dalzell A, Kuchi S, Zhang S, Lenz K, Boogaard PJ, Ketelslegers HB, Gant TW, Wright FA, Rusyn I. 2021. Grouping of UVCB substances with new approach methodologies (NAMs) data. ALTEX 38:123-137. doi:10.14573/altex.2006262 PMID:33086383 PMCID:PMC7900923
  • Hsieh N, Bois FY, Tsakalozou E, Ni Z, Yoon M, Sun W, Klein M, Reisfeld B, Chiu WA. 2021. A Bayesian population physiologically based pharmacokinetic absorption modeling approach to support generic drug development: application to bupropion hydrochloride oral dosage forms. J Pharmacokinet Pharmacodyn 48(6):doi:10.1007/s10928-021-09778-5 PMID:34553275 (ahead of print)
  • Hsieh N, Chen Z, Rusyn I, Chiu WA. 2021. Risk Characterization and Probabilistic Concentration Response Modeling of Complex Environmental Mixtures Using New Approach Methodologies (NAMs) Data from Organotypic in Vitro Human Stem Cell Assays. Environ Health Perspect 129:doi:10.1289/EHP7600 PMID:33395322 PMCID:PMC7781439
  • Jang S, McDonald TJ, Bhandari S, Rusyn I, Chiu WA. 2021. Spatial and temporal distribution of surface water contaminants in the Houston Ship Channel after the Intercontinental Terminal Company Fire. J Expo Sci Environ Epidemiol 31(5):doi:10.1038/s41370-021-00343-3 PMID:34079063 (ahead of print)
  • Jolly PE, Mazariegos M, Contreras H, Balas N, Junkins A, Aina IO, Minott S, Wang M, Phillips TD. 2021. Aflatoxin exposure among mothers and their infants from the western highlands of Guatemala. Matern Child Health J 25:doi:10.1007/s10995-021-03151-1 PMID:33945085 PMCID:PMC8404172
  • Kim I, Kaihatu JM. 2021. A consistent nonlinear mild-slope equation model. Coast. Eng 170:
  • Kim S, Richardson L, Radnaa E, Chen Z, Rusyn I, Menon R, Han A. 2021. Molecular mechanisms of environmental toxin cadmium at the feto-maternal interface investigated using an organ-on-chip (FMi-OOC) model. J Hazard Mater 422:126759. doi:10.1016/j.jhazmat.2021.126759 PMID:34391970 (ahead of print)
  • Kirkwood KI, Christopher MW, Burgess JL, Littau S, Foster K, Richey K, Pratt BS, Shulman N, Tamura K, MacCoss MJ, MacLean BX, Baker ES. 2021. Development and application of multidimensional lipid libraries to investigate lipidomic dysregulation related to smoke inhalation injury severity. J Proteome Res doi:10.1021/acs.jproteome.1c00820 PMID:34874736 PMCID:PMC8741653
  • Kofeler HC, Ahrends R, Baker ES, Ekroos K, Han X, Hoffmann N, Holcapek M, Wenk MR, Liebisch G. 2021. Recommendations for good practice in MS-based lipidomics. J Lipid Res 62:doi:10.1016/j.jlr.2021.100138 PMID:34662536 PMCID:PMC8585648
  • Li D, Newman G, Wilson B, Zhang Y, Brown RD. 2021. Modeling the relationships between historical redlining, urban heat, and heat-related emergency department visits: An examination of 11 Texas cities. Environ Plan B Urban Anal City Sci 20:doi:10.1177/23998083211039854
  • Li D, Newman G, Zhang T, Zhu R, Horney JA. 2021. Coping with post-hurricane mental distress: The role of neighborhood green space. Soc Sci Med 281:114084. doi:10.1016/j.socscimed.2021.114084 PMID:34107388
  • Lind L, Araujo JA, Barchowsky A, Belcher SM, Berridge BR, Chiamvimonvat N, Chiu WA, Cogliano VJ, Elmore S, Farraj AK, Gomes AV, McHale CM, Meyer-Tamaki KB, Posnack NG, Vargas HM, Yang X, Zeise L, Zhou C, Smith MT. 2021. Key characteristics of cardiovascular toxicants. Environ Health Perspect 129(9):95001. doi:10.1289/EHP9321 PMID:34558968 PMCID:PMC8462506
  • Luo Y, Chen Z, Blanchette A, Zhou Y, Wright FA, Baker ES, Chiu WA, Rusyn I. 2021. Relationships between constituents of energy drinks and beating parameters in human induced pluripotent stem cell (iPSC)-derived cardiomyocytes. Food Chem Toxicol doi:10.1016/j.fct.2021.111979 PMID:33450301
  • Marvel S, House JS, Wheeler M, Song K, Zhou Y, Wright FA, Chiu WA, Rusyn I, Motsinger-Reif A, Reif DM. 2021. The COVID-19 Pandemic Vulnerability Index (PVI) dashboard: Monitoring county-level vulnerability using visualization, statistical modeling, and machine learning. Environ Health Perspect 129:17701. doi:10.1289/EHP8690 PMID:33400596 PMCID:PMC7785295
  • Newman G, Cai Z, Zhu R, Horney JA, Jang S, Chiu WA. 2021. Gauging the effects of potential chemical transferal on high flood-risk fenceline communities. JEIL 6(2):doi:10.3808/jeil.202100073
  • Newman G, Lee R, Qu A, Pu C. 2021. Design for the depopulating landscape: A retrofit approach to urban regeneration in Johnstown, Pennsylvania, USA. Landsc Archit Front 8(6):
  • Newman G, Malecha M, Atoba K. 2021. Integrating ToxPi outputs with ArcGIS Dashboards to identify neighborhood threat levels of contaminant transferal during flood events. J of Spa Sci 13:doi:10.1080/14498596.2021.1891149
  • Odenkirk MT, Reif DM, Baker ES. 2021. Multiomic big data analysis challenges: Increasing confidence in the interpretation of artificial intelligence assessments. Anal Chem 93(22):7763-7773. doi:10.1021/acs.analchem.0c04850 PMID:34029068
  • Orr AA, Wang M, Beykal B, Ganesh HS, Hearon S, Pistikopoulos EN, Phillips TD, Tamamis P. 2021. Combining experimental isotherms, minimalistic simulations, and a model to understand and predict chemical adsorption onto montmorillonite clays. ACS Omega 6(22):14090-14103. doi:10.1021/acsomega.1c00481 PMID:34124432 PMCID:PMC8190805
  • Pappas I, Avraamidou S, Katz J, Burnak B, Beykal B, Turkay M, Pistikopoulos EN. 2021. Multiobjective optimization of mixed-integer linear programming problems: A multiparametric optimization approach. Ind Eng Chem Res 60:8493-8503. doi:10.1021/acs.iecr.1c01175 PMID:34219916 PMCID:PMC8248908
  • Perez MJ, Crist JD, Kirsch KR, Salter PS, Horney JA. 2021. When apologies become meaningful: Perceptions of apologies in environmental justice communities. J Environ Psychol 77:
  • Prybutok S, Newman G, Atoba K, Sansom G, Tao Z. 2021. Combining co$ting nature and suitability modeling to identify high flood risk areas in need of nature-based services. Land 10(8):853. doi:10.3390/land10080853 PMID:34532079 PMCID:PMC8443209
  • Roman-Hubers AT, Cordova AC, Aly NA, McDonald TJ, Lloyd D, Wright FA, Baker ES, Chiu WA, Rusyn I. 2021. Data processing workflow to identify structurally related compounds in petroleum substances using ion mobility spectrometry-mass spectrometry. Energy Fuels 35:10529-10539. doi:10.1021/acs.energyfuels.1c00892 PMID:34366560 PMCID:PMC8341389
  • Roman-Hubers AT, McDonald TJ, Baker ES, Chiu WA, Rusyn I. 2021. A comparative analysis of analytical techniques for rapid oil spill identification. Environ Toxicol Chem 40(4):1034-1049. doi:10.1002/etc.4961 PMID:33315271 PMCID:PMC8104454
  • Rusyn I, Arzuaga X, Cattley RC, Corton JC, Ferguson SS, Godoy P, Guyton KZ, Kaplowitz N, Khetani SR, Roberts RA, Roth RA, Smith MT. 2021. Key characteristics of human hepatotoxicants as a basis for identification and characterization of the causes of liver toxicity. Hepatology 74(6):doi:10.1002/hep.31999 PMID:34105804 (ahead of print)
  • Sakolish C, Luo Y, Chiu WA, Rusyn I, Reese CE, Valdiviezo A, Schurdak ME, Gough A, Taylor DL, Vernetti LA. 2021. Analysis of reproducibility and robustness of a human microfluidic four-cell liver acinus microphysiology system (LAMPS). Toxicology 448:doi:10.1016/j.tox.2020.152651 PMID:33307106 PMCID:PMC7785655
  • Sakolish C, Luo Y, Valdiviezo A, Vernetti LA, Rusyn I, Chiu WA. 2021. Prediction of hepatic drug clearance with a human microfluidic four-cell liver acinus microphysiology system. Toxicology 463:152954. doi:10.1016/j.tox.2021.152954 PMID:34543702 PMCID:PMC8585690
  • Sansom G, Hannibal B. 2021. Disparate access to nutritional food; place, race and equity in the United States. BMC Nutr 7(1):29. doi:10.1186/s40795-021-00434-2 PMID:34183071 PMCID:PMC8240216
  • Sansom G, Kirsch KR, Casillas GA, Camargo K, Wade TL, Knap A, Baker ES, Horney JA. 2021. Spatial distribution of polycyclic aromatic hydrocarbon contaminants after Hurricane Harvey in a Houston neighborhood. J Health Pollut 11(29):doi:10.5696/2156-9614-11.29.210308 PMID:33815906 PMCID:PMC8009646
  • Sarnosky K, Benden M, Cizmas LH, Regan A, Sansom G. 2021. Remote work and the environment: Exploratory analysis of indoor air quality of commercial offices and the home office. Res Sq doi:10.21203/rs.3.rs-146008/v1 (ahead of print)
  • Shao H, Kim G, Li Q, Newman G. 2021. Web of Science-based green infrastructure: A bibliometric analysis in CiteSpace. Land 10(7):711. doi:10.3390/land10070711 PMID:34413981 PMCID:PMC8373208
  • Sohn W, Bae J, Newman G. 2021. Green infrastructure for coastal flood protection: The longitudinal impacts of green infrastructure patterns on flood damage. Appl. Geogr 135:doi:10.1016/j.apgeog.2021.102565 PMID:34621098 PMCID:PMC8492007
  • Stone KW, Felkner M, Garza E, Perez-Patron M, Schmit C, McDonald TJ, Horney JA. 2021. Epidemiology surveillance and capacity improvement: A characterization of Texas, 2017. Disaster Med Public Health Prep 1-8. doi:10.1017/dmp.2020.471 PMID:33726884 (ahead of print)
  • Valdiviezo A, Aly NA, Luo Y, Cordova AC, Casillas GA, Foster MR, Baker ES, Rusyn I. 2021. Analysis of per- and polyfluoroalkyl substances in Houston Ship Channel and Galveston Bay following a large-scale industrial fire using ion-mobility-spectrometry-mass spectrometry. J Environ Sci (China) 115:350-362. doi:10.1016/j.jes.2021.08.004 PMID:34969462 PMCID:PMC8724578
  • Valdiviezo A, Luo Y, Chen Z, Chiu WA, Rusyn I. 2021. Quantitative in vitro-to-in vivo extrapolation for mixtures: A case study of Superfund priority list pesticides. Toxicol Sci 183(1):doi:10.1093/toxsci/kfab076 PMID:34142158 (ahead of print)
  • Wang M, Chen Z, Rusyn I, Phillips TD. 2021. Testing the efficacy of broad-acting sorbents for environmental mixtures using isothermal analysis, mammalian cells, and H. vulgaris. J Hazard Mater 408:124425. doi:10.1016/j.jhazmat.2020.124425 PMID:33162237 PMCID:PMC7904642
  • Wang M, Orr AA, Jakubowski JM, Bird KE, Casey CM, Hearon S, Tamamis P, Phillips TD. 2021. Enhanced adsorption of per- and polyfluoroalkyl substances (PFAS) by edible, nutrient-amended montmorillonite clays. Water Res 188:116534. doi:10.1016/j.watres.2020.116534 PMID:33125992 PMCID:PMC7725962
  • Wang M, Rivenbark K, Gong J, Wright FA, Phillips TD. 2021. Application of edible montmorillonite clays for the adsorption and detoxification of microcystin. ACS Appl Bio Mater 4(9):7254-7265. doi:10.1021/acsabm.1c00779
  • Weng J, Wong RK, Jun M, Schumacher C, Saravanan R, Sun C. 2021. Statistical and machine learning methods applied to the prediction of different tropical rainfall types. Environ Res Commun 3:
  • Woodruff S, Bowman AO, Hannibal B, Sansom G, Portney K. 2021. Urban resilience: Analyzing the policies of U.S. cities. Cities 115:doi:10.1016/j.cities.2021.103239 PMID:34803206 PMCID:PMC8605798
  • Woodruff S, Tran T, Lee J, Wilkins C, Newman G, Ndubisi F, Van Zandt S. 2021. Green infrastructure in comprehensive plans in coastal Texas. Journal of Environmental Planning and Management doi:10.1080/09640568.2020.1835618
  • Zamith-Miranda D, Heyman HM, Burnet MC, Couvillion SP, Zheng X, Munoz N, Nelson WC, Kyle JE, Zink EM, Weitz KK, Bloodsworth KJ, Clair G, Zucker JD, Teuton JR, Payne SH, Kim Y, Gil MR, Baker ES, Bredeweg EL, Nosanchuk JD, Nakayasu ES. 2021. A histoplasma capsulatum lipid metabolic map identifies antifungal targets. MBio 12(6):e0297221. doi:10.1128/mBio.02972-21 PMID:34809453 PMCID:PMC8609360
  • Zhu R, Newman G. 2021. The projected impacts of smart decline on urban runoff contamination levels. Computational Urban Science doi:10.1007/s43762-021-00002-1 PMID:34888588 PMCID:PMC8653986

2020

  • Aly NA, Luo Y, Liu Y, Casillas GA, McDonald TJ, Kaihatu JM, Jun M, Ellis N, Gossett S, Dodds J, Baker ES, Bhandari S, Chiu WA, Rusyn I. 2020. Temporal and spatial analysis of per and polyfluoroalkyl substances in surface waters of Houston ship channel following a large-scale industrial fire incident. Environ Pollut 265:115009. doi:10.1016/j.envpol.2020.115009 PMID:32574947 PMCID:PMC7857671
  • Beykal B, Avraamidou S, Pistikopoulos IP, Onel M, Pistikopoulos EN. 2020. DOMINO: Data driven optimization of bi level mixed integer nonlinear problems. J Glob Optim 36:doi:10.1007/s10898-020-00890-3 PMID:32753792 PMCID:PMC7402589
  • Beykal B, Onel M, Onel O, Pistikopoulos EN. 2020. A data-driven optimization algorithm for differential algebraic equations with numerical infeasibilities. AIChE Journal doi:10.1002/aic.16657 PMID:32921798 PMCID:PMC7485937
  • Bhandari S, Lewis PT, Craft ES, Marvel S, Reif DM, Chiu WA. 2020. HGBEnviroScreen: Enabling community action through data integration in the Houston-Galveston-Brazoria region. Int J Environ Res Public Health 17:doi:10.3390/ijerph17041130 PMID:32053902
  • Bi K, Beykal B, Avraamidou S, Pappas I, Pistikopoulos EN, Qiu T. 2020. Integrated Modeling of Transfer Learning and Intelligent Heuristic Optimization for a Steam Cracking Process. Ind Eng Chem Res 59:16357-16367. doi:10.1021/acs.iecr.0c02657 PMID:33041499 PMCID:PMC7543991
  • Blanchette A, Burnett SD, Grimm FA, Rusyn I, Chiu WA. 2020. A Bayesian method for population-wide cardiotoxicity hazard and risk characterization using an in vitro human model. Toxicol Sci 178(2):391-403. doi:10.1093/toxsci/kfaa151 PMID:33078833 PMCID:PMC7751158
  • Blessinger T, Davis JA, Chiu WA, Stanek J, Woodall G, Gift J, Thayer KA, Bussard D. 2020. Application of a unified probabilistic framework to the dose-response assessment of acrolein. Environ Int 143:105953. doi:10.1016/j.envint.2020.105953 PMID:32768806 (ahead of print)
  • Bois FY, Hsieh N, Gao W, Chiu WA, Reisfeld B. 2020. Well-tempered MCMC simulations for population pharmacokinetic models. J Pharmacokinet Pharmacodyn doi:10.1007/s10928-020-09705-0 PMID:32737765
  • Camargo K, Sericano JL, Bhandari S, Hoelscher C, McDonald TJ, Chiu WA, Wade TL, Dellapenna TM, Liu Y, Knap A. 2020. Polycyclic aromatic hydrocarbon status in post-hurricane Harvey sediments: considerations for environmental sampling in the Galveston Bay/Houston Ship Channel region. Mar Pollut Bull 162:111872. doi:10.1016/j.marpolbul.2020.111872 PMID:33256967 PMCID:PMC7867649
  • Chen C, Yang S, Liu Y, Jamieson P, Shan L, Chu K. 2020. Accumulation and phytotoxicity of perfluorooctanoic acid and 2,3,3,3-tetrafluoro-2-(heptafluoropropoxy)propanoate in Arabidopsis thaliana and Nicotiana benthamiana. Environ Pollut 259(9):doi:10.1016/j.envpol.2019.113817
  • Chen Z, Liu Y, Wright FA, Chiu WA, Rusyn I. 2020. Rapid hazard characterization of environmental chemicals using a compendium of human cell lines from different organs. ALTEX 37:623-638. doi:10.14573/altex.2002291 PMID:32521033
  • Chiu WA, Paoli GM. 2020. Recent Advances in Probabilistic Dose-Response Assessment to Inform Risk Based Decision Making. Risk Anal doi:10.1111/risa.13595 PMID:32966629
  • Dalaijamts C, Cichocki JA, Luo Y, Rusyn I, Chiu WA. 2020. PBPK modeling of impact of nonalcoholic fatty liver disease on toxicokinetics of perchloroethylene in mice. Toxicol Appl Pharmacol 400:115069. doi:10.1016/j.taap.2020.115069 PMID:32445755 PMCID:PMC7339121
  • Danforth C, Chiu WA, Rusyn I, Schultz K, Bolden A, Kwiatkowski C, Craft ES. 2020. An integrative method for identification and prioritization of constituents of concern in produced water from onshore oil and gas extraction. Environ Int 134:14. doi:10.1016/j.envint.2019.105280 PMID:31704566
  • de Conti A, Tryndyak VP, Willett RA, Borowa-Mazgaj B, Watson A, Patton R, Khare S, Muskhelishvili L, Olsen GR, Avigan MI, Cerniglia CE, Ross SA, Sanyal AJ, Beland FA, Rusyn I, Pogribny IP. 2020. Characterization of the variability in the extent of nonalcoholic fatty liver induced by a high-fat diet in the genetically diverse collaborative cross mouse model. FASEB J 34:7773-7785. doi:10.1096/fj.202000194R PMID:32304142 PMCID:PMC755243
  • Dellapenna TM, Hoelscher C, Hill L, Al Mukaimi ME, Knap A. 2020. How tropical cyclone flooding caused erosion and dispersal of mercury-contaminated sediment in an urban estuary: The impact of Hurricane Harvey on Buffalo Bayou and the San Jacinto Estuary, Galveston Bay, USA. Sci Total Environ 748(15):141226. doi:10.1016/j.scitotenv.2020.141226 PMID:32818899 PMCID:PMC7606715
  • Dodds J, Hopkins ZR, Knappe D, Baker ES. 2020. Rapid characterization of per- and polyfluoroalkyl substances (PFAS) by ion mobility spectrometry-mass spectrometry (IMS-MS). Anal Chem 92:4427-4435. doi:10.1021/acs.analchem.9b05364 PMID:32011866 PMCID:PMC7173758
  • Ekelof M, Dodds J, Khodjaniyazova S, Garrard K, Baker ES, Muddiman DC. 2020. Coupling IR-MALDESI with Drift Tube Ion Mobility-Mass Spectrometry for High-Throughput Screening and Imaging Applications. J Am Soc Mass Spectrom 31:doi:10.1021/jasms.9b00081 PMID:31971795 PMCID:PMC7263366
  • Grimm FA, Klaren WD, Li X, Lehmler H, Karmakar M, Robertson LW, Chiu WA, Rusyn I. 2020. Cardiovascular effects of polychlorinated biphenyls and their major metabolites. Environ Health Perspect 128:77008. doi:10.1289/EHP7030 PMID:32701041 PMCID:PMC7377239
  • Hearon S, Wang M, Phillips TD. 2020. Strong adsorption of dieldrin by parent and processed montmorillonite clays. Environ Toxicol Chem 39:517-525. doi:10.1002/etc.4642 PMID:31756776 PMCID:PMC7047628
  • Horney JA, Dwyer C, Vendrell-Velez B, Newman G. 2020. Validating a comprehensive plan scoring system for health community design in League City, Texas. In: Urban Design and Human Flourishing: Creating Places that Enable People to Live Health and Fulfilling Lives. Taylor and Francis Books, (in press)
  • Horney JA, Dwyer C, Vendrell-Velez B, Newman G. 2020. Validating a comprehensive plan scoring system for healthy community design in League City, Texas. J Urban Des 25:2013-217. doi:10.1080/13574809.2019.1572453 PMID:32132860 PMCID:PMC7055687
  • Horney JA, Stone KL, Karaye I, Rauscher EA. 2020. Resident perceptions of environmental pollution in recreational areas flooded by Hurricane Harvey in Houston, Texas. J Environ Health 83:8-16.
  • House JS, Bouzos E, Fahy K, Francisco VM, Lloyd D, Wright FA, Motsinger-Reif A, Asuri P, Wheeler K. 2020. Low dose silver nanoparticle surface chemistry and temporal effects on gene expression in human liver cells. Wiley Interdiscip Rev Nanomed Nanobiotechnol doi:10.1002/smll.202000299 PMID:32227433 PMCID:PMC7446734
  • Hsieh N, Reisfeld B, Chiu WA. 2020. pksensi: An R package to apply global sensitivity analysis in physiologically based kinetic modeling. SoftwareX 12:doi:10.1016/j.softx.2020.100609 PMID:33426260 PMCID:PMC7790364
  • Keshava C, Davis JA, Stanek J, Thayer KA, Galizia A, Keshava N, Gift J, Vulimiri SV, Woodall G, Gigot C, Garcia K, Greenhalgh A, Schulz B, Volkoff SJ, Camargo K, Persad A. 2020. Application of systematic evidence mapping to assess the impact of new research when updating health reference values: A case example using acrolein. Environ Int 143:105956. doi:10.1016/j.envint.2020.105956 PMID:32702594 (ahead of print)
  • Kim G, Newman G, Jiang B. 2020. Urban regeneration: Community engagement process for vacant land in declining cities. Cities 102:12. doi:10.1016/j.cities.2020.102730
  • Kim Y, Newman G. 2020. Advancing scenario planning through integrating urban growth prediction with future flood risk model. Comput Environ Urban Syst 82:14. doi:10.1016/j.compenvurbsys.2020.101498 PMID:32431469 PMCID:PMC7236661
  • Kim Y, Newman G, Guneralp B. 2020. A review of driving factors, scenarios, and topics in urban land change models. Land 9(8):246. doi:10.3390/land9080246
  • Kovalakova P, Cizmas LH, McDonald TJ, Marsalek B, Feng M, Sharma VK. 2020. Occurrence and toxicity of antibiotics in the aquatic environment: A review. Chemosphere 251:126351. doi:10.1016/j.chemosphere.2020.126351 PMID:32443222
  • Luo Y, Aly NA, McCord JP, Strynar M, Chiu WA, Dodds J, Baker ES, Rusyn I. 2020. Rapid characterization of emerging per- and polyfluoroalkyl substances in aqueous film-forming foams using ion mobility spectrometry-mass spectrometry. Environ Sci Technol 54(23):15024-15034. doi:10.1021/acs.est.0c04798 PMID:33176098 PMCID:PMC7719402
  • Luo Y, Ferguson K, Rusyn I, Chiu WA. 2020. In Vitro Bioavailability of the Hydrocarbon Fractions of Dimethyl Sulfoxide Extracts of Petroleum Substances. Toxicol Sci doi:10.1093/toxsci/kfaa007 PMID:32040194
  • Malecha M, Kirsch KR, Karaye I, Horney JA, Newman G. 2020. Advancing the toxics mobility inventory: Development and application of a toxics mobility vulnerability index to Harris County, Texas. Sustainability 13(6):282-291. doi:10.1089/sus.2020.0067
  • Marvel S, House JS, Wheeler M, Song K, Zhou Y, Wright FA, Chiu WA, Rusyn I, Motsinger-Reif A, Reif DM. 2020. The COVID-19 Pandemic Vulnerability Index (PVI) Dashboard: Monitoring county-level vulnerability using visualization, statistical modeling, and machine learning. (non-peer reviewed)
  • Marx U, Akabane T, Andersson TB, Baker E, Beilmann M, Beken S, Brendler-Schwaab S, Cirit M, David R, Dehne E, Durieux I, Ewart L, Fitzpatrick S, Frey O, Fuchs F, Griffith LG, Hamilton GA, Hartung T, Hoeng J, Hogberg HT, Hughes DJ, Ingber DE, Iskandar A, Kanamori T, Kojima H, Kuehnl J, Leist M, Li B, Loskill P, Mendrick D, Neumann T, Pallocca G, Rusyn I, Smirnova L, Steger-Hartmann T, Tagle DA, Tonevitsky A, Tsyb S, Trapecar M, Van de Water B, Van den Eijnden-van Raaij J, Vulto P, Watanabe K, Wolf A, Zhou X, Roth A. 2020. Biology-inspired microphysiological systems to advance patient benefit and animal welfare in drug development. ALTEX 37:365-394. doi:10.14573/altex.2001241 PMID:32113184 PMCID:PMC7863570
  • Mistry R, Singh PK, Mancini MG, Stossi F, Mancini MA. 2020. Single cell analysis of transcriptionally active alleles by single molecule FISH. J Vis Exp 163:doi:10.3791/61680 PMID:33016938 PMCID:PMC8549401
  • Mukherjee R, Beykal B, Szafran AT, Onel M, Stossi F, Mancini MG, Lloyd D, Wright FA, Zhou L, Mancini MA, Pistikopoulos EN. 2020. Classification of estrogenic compounds by coupling high content analysis and machine learning algorithms. PLoS Comput Biol 16:24. doi:10.1371/journal.pcbi.1008191 PMID:32970665 PMCID:PMC7538107
  • Newman G, Kim Y, Joshi K, Liu J. 2020. Integrating prediction and performance models into scenario-based resilient community design. JoDLA 5:510-520. doi:10.14627/537690052 PMID:32856026 PMCID:PMC7448720
  • Newman G, Kim Y, Kim G, Lee R, Gu D, Forghanparast K, Goldberg D. 2020. A python script for longitudinally measuring the duration of vacant land uses. J of Spa Sci 13:doi:10.1080/14498596.2020.1721344
  • Newman G, Shi T, Yao Z, Li D, Sansom G, Kirsch KR, Casillas GA, Horney JA. 2020. Citizen science-informed community master planning: land use and built environment changes to increase flood resilience and decrease contaminant exposure. Int J Environ Res Public Health 17:doi:10.3390/ijerph17020486 PMID:31940904
  • Nickodem CA, Menon R, McDonald TJ, Taylor BD. 2020. Circulating short-chain fatty acids in preterm birth: A pilot case-control study. Reprod Sci 27(5):1181-1186. doi:10.1007/s43032-019-00126-0 PMID:32046422
  • Noh Y, Newman G, Lee R. 2020. Urban decline and residential preference: The effect of vacant lots on housing premiums. Environ Plan B Urban Anal City Sci doi:10.1177/2399808320933906
  • Odenkirk MT, Stratton KG, Bramer LM, Webb-Robertson B, Bloodsworth KJ, Monroe ME, Burnum-Johnson KE, Baker ES. 2020. From Prevention to Disease Perturbations: A Multi-Omic Assessment of Exercise and Myocardial Infarctions. Biomolecules 11(1):40. doi:10.3390/biom11010040 PMID:33396843 PMCID:PMC7824308
  • Odenkirk MT, Stratton KG, Gritsenko MA, Bramer LM, Webb-Robertson B, Bloodsworth KJ, Weitz KK, Lipton AK, Monroe ME, Ash J, Fourches D, Taylor BD, Burnum-Johnson KE, Baker ES. 2020. Unveiling molecular signatures of preeclampsia and gestational diabetes mellitus with multi-omics and innovative cheminformatics visualization tools. Mol Omics 16(6):doi:10.1039/d0mo00074d PMID:32966491 (ahead of print)
  • Odenkirk MT, Zin PK, Ash J, Reif DM, Fourches D, Baker ES. 2020. Structural-based connectivity and omic phenotype evaluations (SCOPE): a cheminformatics toolbox for investigating lipidomic changes in complex systems. Analyst 145:7197-7209. doi:10.1039/d0an01638a PMID:33094747 PMCID:PMC769503
  • Onel M, Burnak B, Pistikopoulos EN. 2020. Integrated Data-Driven Process Monitoring and Explicit Fault-Tolerant Multiparametric Control. Ind Eng Chem Res 59(6):2291-2306. doi:10.1021/acs.iecr.9b04226 PMID:32549652 PMCID:PMC7299207
  • Orr AA, He S, Wang M, Goodall A, Hearon S, Phillips TD, Tamamis P. 2020. Insights into the interactions of bisphenol and phthalate compounds with unamended and carnitine-amended montmorillonite clays. Computers & Chemical Engineering 143:107063. doi:10.1016/j.compchemeng.2020.107063
  • Rowe GT, Fernando H, Elferink CJ, Ansari G, Sullivan J, Heathman T, Quigg A, Croisant S, Wade TL, Santschi P. 2020. Polycyclic aromatic hydrocarbons (PAHs) cycling and fates in Galveston Bay, Texas, USA. PLoS One 15:e0243734. doi:10.1371/journal.pone.0243734 PMID:33370322 PMCID:PMC7769252
  • Rusyn I, Chiu WA, Wright FA. 2020. Questioning existing cancer hazard evaluation standards in the name of statistics. Toxicol Sci 177:521-522. doi:10.1093/toxsci/kfaa077 PMID:32462183
  • Sakolish C, Chen Z, Dalaijamts C, Mitra K, Liu Y, Fulton T, Wade TL, Kelly EJ, Rusyn I, Chiu WA. 2020. Predicting tubular reabsorption with a human kidney proximal tubule tissue-on-a-chip and physiologically-based modeling. Toxicol In Vitro 63:doi:10.1016/j.tiv.2019.104752 PMID:31857146
  • Sansom G, Aarvig K, Sansom L, Thompson C, Fawkes L, Katare A. 2020. Understanding risk communication and willingness to follow emergency recommendations following anthropogenic disasters. Environ Justice 14:2. doi:10.1089/env.2020.0050
  • Sansom G, Kirsch KR, Horney JA. 2020. Using the 12-item short form health survey (SF-12) to assess self rated health of an engaged population impacted by Hurricane Harvey, Houston, TX. BMC Public Health 20:doi:10.1186/s12889-020-8349-x PMID:32075614 PMCID:PMC7031970
  • Soper-Hopper M, Vandegrift J, Baker ES, Fernandez FM. 2020. Metabolite collision cross section prediction without energy-minimized structures. Analyst 16:doi:10.1039/d0an00198h PMID:32583823 PMCID:PMC7423765
  • Stossi F, Dandekar RD, Mancini MG, Gu G, Fuqua SA, Nardone A, De Angelis C, Fu X, Schiff R, Bedford MT, Xu W, Johansson HE, Stephan C, Mancini MA. 2020. Estrogen-induced transcription at individual alleles is independent of receptor level and active conformation but can be modulated by coactivators activity. Nucleic Acids Res 48:1800-1810. doi:10.1093/nar/gkz1172 PMID:31930333 PMCID:PMC7039002
  • Stossi F, Mistry R, Singh PK, Johnson H, Mancini MG, Szafran AT, Mancini MA. 2020. Single cell distribution analysis of AR levels by high throughput microscopy in cell models: Application for testing endocrine disrupting chemicals. SLAS Discov 11:doi:10.1177/2472555220934420 PMID:32552291
  • Szafran AT, Bolt MJ, Obkirchner CE, Mancini MG, Helsen C, Claessens F, Stossi F, Mancini MA. 2020. A mechanistic high-content analysis assay using a chimeric androgen receptor that rapidly characterizes androgenic chemicals. SLAS Discov 14:doi:10.1177/2472555220922917 PMID:32392092
  • Van Zandt S, Masterson J, Newman G, Meyer M. 2020. Engaged Research for Community Resilience to Climate Change. Elsevier, Cambridge, MA.
  • Wang M, Bera G, Mitra K, Wade TL, Knap A, Phillips TD. 2020. Tight sorption of arsenic, cadmium, mercury, and lead by edible activated carbon and acid-processed montmorillonite clay. Environ Sci Pollut Res Int 28(6):doi:10.1007/s11356-020-10973-z PMID:33009611 (ahead of print)
  • Wang M, Hearon S, Phillips TD. 2020. A high capacity bentonite clay for the sorption of aflatoxins. Food Addit Contam Part A Chem Anal Control Expo Risk Assess 37:332-341. doi:10.1080/19440049.2019.1662493 PMID:31790632 PMCID:PMC6989347
  • Wang M, Phillips TD. 2020. Edible clay inclusion in the diet of oysters can reduce tissue residues of polychlorinated biphenyls. Toxicol Environ Health Sci 12:355-361. doi:10.1007/s13530-020-00058-2 PMID:33738241 PMCID:PMC7968863
  • Zhu R, Tao Z, Newman G. 2020. Growth and shrinkage pre and post tsunami in Fukushima Prefecture, Japan. Landsc Res Rec

2019

  • Alves VM, Borba J, Capuzzi SJ, Muratov EN, Andrade CH, Rusyn I, Tropsha A. 2019. Oy vey! A comment on machine learning of toxicological big data enables read-across structure activity relationships outperforming animal test reproducibility. Toxicol Sci 167:3-4. doi:10.1093/toxsci/kfy286 PMID:30500930 PMCID:PMC6317419
  • Bera G, Camargo K, Sericano JL, Liu Y, Sweet S, Horney JA, Jun M, Chiu WA, Rusyn I, Wade TL, Knap A. 2019. Baseline data for distribution of contaminants by natural disasters: Results from a residential Houston neighborhood during Hurricane Harvey flooding. Heliyon 5:e02860. doi:10.1016/j.heliyon.2019.e02860 PMID:31763489 PMCID:PMC6861583
  • Blanchette A, Grimm FA, Dalaijamts C, Hsieh N, Ferguson K, Luo Y, Rusyn I, Chiu WA. 2019. Thorough QT/QTc in a dish: An In Vitro human model that accurately predicts clinical concentration-QTc relationships. Clin Pharmacol Ther 105:1175-1186. doi:10.1002/cpt.1259 PMID:30346629 PMCID:PMC6465173
  • Burnett SD, Blanchette A, Grimm FA, House JS, Reif DM, Wright FA, Chiu WA, Rusyn I. 2019. Population-based toxicity screening in human induced pluripotent stem cell-derived cardiomyocytes. Toxicol Appl Pharmacol 381:114711. doi:10.1016/j.taap.2019.114711 PMID:31425687 PMCID:PMC6745256
  • Burnum-Johnson KE, Zheng X, Dodds J, Ash J, Fourches D, Nicora CD, Wendler J, Metz TO, Waters KM, Jansson J, Smith RD, Baker ES. 2019. Ion mobility spectrometry and the omics: Distinguishing isomers, isobars, molecular classes and contaminant ions in complex samples. Trends in Analytical Chemistry 116:292-299. doi:10.1016/j.trac.2019.04.022 PMID:31798197 PMCID:PMC6887105
  • Di Bona M, Mancini MA, Mazza D, Vicidomini G, Diaspro A, Lanzano L. 2019. Measuring Mobility in Chromatin by Intensity-Sorted FCS. Biophys J 116(6):P987-999. doi:10.1016/j.bpj.2019.02.003 PMID:30819566 PMCID:PMC6428914
  • Dodds J, Baker ES. 2019. Ion mobility spectrometry: fundamental concepts, instrumentation, applications, and the road ahead. J Am Soc Mass Spectrom doi:10.1007/s13361-019-02288-2 PMID:31493234 PMCID:PMC6832852
  • Englehardt JD, Chiu WA. 2019. A general dose-response relationship for chronic chemical and other health stressors and mixtures based on an emergent illness severity model. PLoS One 14(2):e0211780. doi:10.1371/journal.pone.0211780 PMID:30768598 PMCID:PMC6377108
  • Ferguson K, Luo Y, Rusyn I, Chiu WA. 2019. Comparative analysis of Rapid Equilibrium Dialysis (RED) and solid phase micro-extraction (SPME) methods for In Vitro-In Vivo extrapolation of environmental chemicals. Toxicol In Vitro 60:245-251. doi:10.1016/j.tiv.2019.06.006 PMID:31195086 PMCID:PMC6717004
  • Grimm FA, House JS, Wilson MR, Sirenko O, Iwata Y, Wright FA, Ball N, Rusyn I. 2019. Multi-dimensional in vitro bioactivity profiling for grouping of glycol ethers. Regul Toxicol Pharmacol 101:91-102. doi:10.1016/j.yrtph.2018.11.011 PMID:30471335 PMCID:PMC6333527
  • Gu D, Newman G, Kim J, Park Y, Lee J. 2019. Neighborhood decline and sustainable urbanism: Mitigating housing abandonment in shrinking cities. Land Use Policy 37:doi:10.1016/j.landusepol.2019.02.033 PMCID:PMC6818744
  • Horney JA, Rios J, Cantu A, Ramsey S, Montemayor L, Raun L, Miller A. 2019. Improving Hurricane Harvey disaster research response through academic practice partnerships. Am J Public Health 109:1198-1201. doi:10.2105/AJPH.2019.305166 PMID:31318601 PMCID:PMC6687265
  • Jun M, Ding Y. 2019. Spatio-temporal short-term wind forecast: a calibrated regime-switching method. Annals of Applied Statistics doi:10.1214/19-AOAS1243 (in press)
  • Jun M, Schumacher C, Saravanan R. 2019. Global multivariate point pattern models for rain type occurrence. Spat Stat 31:100355. doi:10.1016/j.spasta.2019.04.003 PMID:31886123 PMCID:PMC6934176
  • Karaye I, Stone KW, Casillas GA, Newman G, Horney JA. 2019. A spatial analysis of possible environmental exposures in recreational areas impacted by Hurricane Harvey flooding, Harris County, Texas. Environ Manage doi:10.1007/s00267-019-01204-4 PMID:31515572 PMCID:PMC6790291
  • Kim Y, Newman G. 2019. Climate change preparedness: comparing future urban growth and flood risk in Amsterdam and Houston. Sustainability 11:24. doi:10.3390/su11041048 PMID:30809384 PMCID:PMC6387741
  • Kirsch J, Elizondo J, De Hoyos Salazar D, Washington S, Burdick T, Alvarez P, Horney JA. 2019. Engaged environmental science for underserved youth. Environ Education Res 25(9):1416-1425. doi:10.1080/13504622.2019.1637822 PMID:31814794 PMCID:PMC6897383
  • Kuthurua S, Szafran AT, Stossi F, Mancini MA, Rao A. 2019. Leveraging image-derived phenotypic measurements for drug-target interaction predictions. Cancer Inform doi:10.1177/1176935119856595 PMID:31217689 PMCID:PMC6563400
  • Kvasnicka J, Stylianou KS, Nguyen VK, Huang L, Chiu WA, Burton AG, Semrau J, Jolliet O. 2019. Human Health Benefits from Fish Consumption vs. Risks from Inhalation Exposures Associated with Contaminated Sediment Remediation: Dredging of the Hudson River. Environ Health Perspect 127:doi:10.1289/EHP5034 PMID:31834828
  • Lee R, Newman G. 2019. A classification scheme for vacant urban lands: integrating duration, land characteristics, and survival rates. J of Land Use Sci doi:10.1080/1747423X.2019.1706655
  • Lewis L, Borowa-Mazgaj B, de Conti A, Chappell G, Luo Y, Bodnar WM, Konganti K, Wright FA, Threadgill DW, Chiu WA, Pogribny IP, Rusyn I. 2019. Population-based analysis of DNA damage and epigenetic effects of 1,3-butadiene in the mouse. Chem Res Toxicol 32(5):doi:10.1021/acs.chemrestox.9b00035 PMID:30990016 (ahead of print)
  • Li D, Zhai Y, Xiao Y, Newman G, Wang D. 2019. Subtypes of park use and self-reported psychological benefits among older adults: A multilevel latent class analysis approach. Landsc Urban Plan 190:doi:10.1016/j.landurbplan.2019.103605 PMID:31341342 PMCID:PMC6656528
  • Luo Y, Cichocki JA, Hsieh N, Lewis L, Wright FA, Threadgill DW, Chiu WA, Rusyn I. 2019. Using Collaborative Cross mouse population to fill data gaps in risk assessment: A case study of population-based analysis of toxicokinetics and kidney toxicodynamics of tetrachloroethylene. Environ Health Perspect 127(6):67011. doi:10.1289/EHP5105 PMID:31246107 PMCID:PMC6792382
  • Masterson J, Meyer M, Ghariabeh N, Hendricks M, Lee R, Musharrat S, Newman G, Sansom G, Van Zandt S. 2019. Interdisciplinary citizen science and design projects for hazard and disaster education. Int J Mass Emergencies Disasters 37:PMCID:PMC6594559
  • Monge ME, Dodds J, Baker ES, Edison AS, Fernandez FM. 2019. Challenges in Identifying the Dark Molecules of Life. Annu Rev Anal Chem 12:177-199. doi:10.1146/annurev-anchem-061318-114959 PMID:30883183 PMCID:PMC6716371
  • Mukherjee R, Onel M, Beykal B, Szafran AT, Stossi F, Mancini MA, Zhou L, Wright FA, Pistikopoulos EN. 2019. Development of the Texas A&M Superfund Research Program computational platform for data integration, visualization, and analysis. Computer Aided Chemical Engineering 46:967-972. doi:10.1016/B978-0-12-818634-3.50162-4 PMID:31612156 PMCID:PMC6791821
  • Newman G, Dongying L, Rui Z, Dingding R. 2019. Resilience through regeneration: the economics of repurposing vacant land with green infrastructure. Landsc Archit Front 6:10-23. doi:10.15302/J-LAF-20180602 PMID:30761217 PMCID:PMC637032
  • Newman G, Lee R, Gu D, Park Y, Saginor J, Van Zandt S, Li W. 2019. Evaluating drivers of housing vacancy a longitudinal analysis of large U.S. cities from 1960 to 2010. J Hous Built Environ 34:807-827. doi:10.1007/s10901-019-09684-w PMID:31857804 PMCID:PMC6920573 (accepted for publication)
  • Newman G, Malecha M, Yu S, Qiao Z, Horney JA, Lee J, Kim Y, Lee R, Berke P. 2019. Integrating a resilience scorecard and landscape performance tools into a Geodesign process. Landscape Research 45(1):63-80. doi:10.1080/01426397.2019.1569219 PMID:31983788 PMCID:PMC6980241
  • Newman G, Qiao Z. 2019. Climate change armor. Cheng Shi She Ji 19(5):50-63. PMID:30680250 PMCID:PMC6342505
  • Onel M, Beykal B, Ferguson K, Chiu WA, McDonald TJ, Zhou L, House JS, Wright FA, Sheen D, Rusyn I, Pistikopoulos EN. 2019. Grouping of complex substances using analytical chemistry data: A framework for quantitative evaluation and visualization. PLoS One 14(10):e0223517. doi:10.1371/journal.pone.0223517 PMID:31600275 PMCID:PMC6786635
  • Onel M, Kieslich CA, Pistikopoulos EN. 2019. A nonlinear support vector machine based feature selection approach for fault detection and diagnosis: application to the Tennessee Eastman process. AIChE Journal 65(3):992-1005. doi:10.1002/aic.16497
  • Perry A, Lynch RM, Rusyn I, Threadgill DW. 2019. Long-term combinatorial exposure to trichloroethylene and inorganic arsenic in genetically heterogeneous mice results in renal tubular damage and cancer-associated molecular changes. G3 (Bethesda) 9(5):1729-1737. doi:10.1534/g3.119.400161 PMID:30898898 PMCID:PMC6505147
  • Plante P, Francovic-Fontaine E, May J, McLean JA, Baker ES, Laviolette F, Marchand M, Corbeil J. 2019. Predicting Ion Mobility Collision Cross-Sections Using a Deep Neural Network: DeepCCS. Anal Chem 91:5191-5199. doi:10.1021/acs.analchem.8b05821 PMID:30932474 PMCID:PMC6628689
  • Potter H, DiMarco S, Knap A. 2019. Tropical cyclone heat potential and the rapid intensification of Hurricane Harvey in the Texas Bight. J Geophys Res Oceans 124(4):2440-2451. doi:10.1029/2018JC014776
  • Sansom G, Berke P, McDonald TJ, Shipp E, Horney JA. 2019. Evaluating the impact of race and gender on environmental risk perceptions in the Houston neighborhood of Manchester. Environ Justice 12(3):doi:10.1089/env.2018.0028 PMID:31871531 PMCID:PMC6927678
  • Sansom G, Cizmas LH, Aarvig K, Dixon B, Kirsch KR, Katare A, Sansom L. 2019. Vulnerable populations exposed to lead-contaminated drinking water within Houston Ship Channel communities. Int J Environ Res Public Health 16(15):E2745. doi:10.3390/ijerph16152745 PMID:31374814 PMCID:PMC6695821
  • Sharma VK, Yu X, McDonald TJ, Jinadatha C, Dionysiou DD, Feng M. 2019. Elimination of antibiotic resistance genes and control of horizontal transfer risk by UV-based treatment of drinking water: A mini review. Frontiers of Environmental Science & Engineering 13:37. doi:10.1007/s11783-019-1122-7 PMID:32133212 PMCID:PMC7055709
  • Stermer A, Klein D, Wilson S, Dalaijamts C, Bai CY, Hall SJ, Madnick SJ, Bianchi E, Chiu WA, Boekelheide K. 2019. Differential toxicity of water versus gavage exposure to trichloroethylene in rats. Environ Toxicol Pharmacol 68:1-3. doi:10.1016/j.etap.2019.02.003 PMID:30836291 PMCID:PMC6594756
  • Stone KW, Casillas GA, Karaye I, Camargo K, McDonald TJ, Horney JA. 2019. Using spatial analysis to examine potential sources of polycyclic aromatic hydrocarbons in an environmental justice community after Hurricane Harvey. Environ Justice 12(4):194-203. doi:10.1089/env.2019.0007 PMID:32292537 PMCID:PMC6707063
  • Stossi F, Dandekar RD, Johnson H, Lavere P, Foulds CE, Mancini MG, Mancini MA. 2019. Tributyltin chloride (TBT) induces RXRA down-regulation and lipid accumulation in human liver cells. PLoS One 14:13. doi:10.1371/journal.pone.0224405 PMID:31710612 PMCID:PMC6844554
  • Tao Z, Newman G, Arnold M, Li M, Kim J. 2019. The living green infrastructure lab: Advancing interdisciplinary teaching and experiential learning in landscape architecture pedagogy. Landsc Res Rec 8:75-86. PMID:31891111 PMCID:PMC6936730
  • Trueblood A, Ross J, Shipp E, McDonald TJ. 2019. Feasibility of Portable Fingerstick Cholinesterase Testing in Adolescents in South Texas. J Prim Care Community Health 10:doi:10.1177/2150132719838716 PMID:30929548 PMCID:PMC6444767
  • Wang M, Hearon S, Johnson N, Phillips TD. 2019. Development of broad-acting clays for the tight adsorption of benzo[a]pyrene and aldicarb. Appl Clay Sci 168:196-202. doi:10.1016/j.clay.2018.11.010 PMID:31435120 PMCID:PMC6703832
  • Wang M, Hearon S, Phillips TD. 2019. Development of enterosorbents that can be added to food and water to reduce toxin exposures during disasters. J Environ Sci Health B 54:514-524. doi:10.1080/03601234.2019.1604039 PMID:31014207 PMCID:PMC6681816
  • Wang M, Orr AA, He S, Dalaijamts C, Chiu WA, Tamamis P, Phillips TD. 2019. Montmorillonites can tightly bind glyphosate and paraquat reducing toxin exposures and toxicity. ACS Omega 4(18):17702-17713. doi:10.1021/acsomega.9b02051 PMID:31681876 PMCID:PMC6822125
  • Wang M, Phillips TD. 2019. Potential applications of clay-based therapy for the reduction of pesticide exposures in humans and animals. Appl. Sci 9:5325. doi:10.3390/app9245325 PMID:32944385 PMCID:PMC7494192
  • Wang M, Safe SH, Hearon S, Phillips TD. 2019. Strong adsorption of Polychlorinated Biphenyls by processed montmorillonite clays: Potential applications as toxin enterosorbents during disasters and floods. Environ Pollut 255:doi:10.1016/j.envpol.2019.113210 PMID:31542671 PMCID:PMC6878994
  • Wang P, Wang Y, Langley SA, Zhou Y, Jen K, Sun Q, Brislawn C, Rojas CM, Wahl KL, Wang T, Fan X, Jansson J, Celniker SE, Zou X, Threadgill DW, Snijders AM, Mao J. 2019. Diverse tumour susceptibility in Collaborative Cross mice: Identification of a new mouse model for human gastric tumourigenesis. Gut doi:10.1136/gutjnl-2018-316691 PMID:30842212
  • Xia J, Chiu L, Nehring R, Bravo Nunez M, Mei Q, Perez M, Zhai Y, Fitzgerald D, Pribis J, Wang Y, Hu C, Powell R, LaBonte S, Jalali A, Matadamas Guzman M, Lentzsch A, Szafran AT, Joshi M, Richters M, Gibson J, Frisch R, Hastings P, Bates D, Queitsch C, Hilsenbeck SG, Coarfa C, Hu JC, Siegele DA, Scott KL, Liang H, Mancini MA, Herman C, Miller KM, Rosenberg SM. 2019. Bacteria-to-human protein networks reveal origins of endogenous DNA damage. Cell 176(1-2):127-143. doi:10.1016/j.cell.2018.12.008 PMID:30633903 PMCID:PMC6344048
  • Yang J, Jun M, Schumacher C, Saravanan R. 2019. Predictive statistical representations of observed and simulated rainfall using generalized linear models. journal of climate 32:3409-3427. doi:10.1175/jcli-d-18-0527.1
  • Zheng X, Smith FB, Aly NA, Cai J, Patterson A, Baker ES. 2019. Evaluating the structural complexity of isomeric bile acids with ion mobility spectrometry. Anal Bioanal Chem 411:4673-4682. doi:10.1007/s00216-019-01869-0 PMID:31098744 PMCID:PMC6612315

2018

  • Avraamidou S, Beykal B, Pistikopoulos IP, Pistikopoulos EN. 2018. A hierarchical Food-Energy-Water Nexus (FEW-N) decision-making approach for Land Use Optimization. Int Symp Process Syst Eng 44:1885-1890. doi:10.1016/B978-0-444-64241-7.50309-8 PMID:30397687
  • Avraamidou S, Milhorn A, Sarwar O, Pistikopoulos EN. 2018. Towards a quantitative food-energy-water nexus metric to facilitate decision making in process systems: A case study on a dairy production plant. ESCAPE 43:391-396. doi:10.1016/B978-0-444-64235-6.50071-1 PMID:30320306
  • Bera G, Parkerton TF, Redman A, Turner N, Renegar DA, Sericano JL, Knap A. 2018. Passive dosing yields dissolved aqueous exposures of crude oil comparable to the CROSERF (Chemical Response to Oil Spill: Ecological Effects Research Forum) water accommodated fraction method. Environ Toxicol Chem 37:2810-2819. doi:10.1002/etc.4263
  • Beykal B, Boukouvala F, Floudas CA, Pistikopoulos EN. 2018. Optimal design of energy systems using constrained grey-box multi-objective optimization. Computers & Chemical Engineering 116:488-502. doi:10.1016/j.compchemeng.2018.02.017 PMID:30546167 PMCID:PMC6287910
  • Chiu WA, Axelrad DA, Dalaijamts C, Dockins C, Shao K, Shapiro AJ, Paoli GM. 2018. Beyond the RfD: Broad application of a probabilistic approach to improve chemical dose response assessments for noncancer effects. Environ Health Perspect 126(6):067009. doi:10.1289/EHP3368 PMID:29968566 PMCID:PMC6084844
  • Chiu WA, Guyton KZ, Martin MT, Reif DM, Rusyn I. 2018. Use of high-throughput in vitro toxicity screening data in cancer hazard evaluations by IARC Monograph Working Groups. ALTEX 35(1):51-64. doi:10.14573/altex.1703231 PMID:28738424 PMCID:PMC5783793
  • Chiu WA, Rusyn I. 2018. Advancing chemical risk assessment decision-making with population variability data: challenges and opportunities. Mamm Genome 29(1-2):182-189. doi:10.1007/s00335-017-9731-6 PMID:29299621 PMCID:PMC5849521
  • Chowdhury P, Powell R, Stephan C, Uray I, Talley T, Karki M, Tripathi D, Park Y, Mancini MA, Davies P, Dere R. 2018. Bexarotene - a novel modulator of AURKA and the primary cilium in VHL-deficient cells. Journal of Cell Science 131(24):doi:10.1242/jcs.219923 PMID:30518623 PMCID:PMC6307881
  • Cuomo D, Porreca I, Ceccarelli M, Threadgill DW, Barrington WT, Petriella A, D'Angelo F, Cobellis G, De Stefano F, D' Agostino MN, De Felice M, Mallardo M, Ambrosino C. 2018. Transcriptional landscape of mouse-aged ovaries reveals a unique set of non-coding RNAs associated with physiological and environmental ovarian dysfunctions. Cell Death Discov doi:10.1038/s41420-018-0121-y PMID:30534420
  • Dalaijamts C, Cichocki JA, Luo Y, Rusyn I, Chiu WA. 2018. Incorporation of the glutathione conjugation pathway in an updated physiologically-based pharmacokinetic model for perchloroethylene in mice. Toxicol Appl Pharmacol 352:142-152. doi:10.1016/j.taap.2018.05.033 PMID:29857080 PMCID:PMC6051410
  • Ezzat AA, Jun M, Ding Y. 2018. Spatio-temporal asymmetry of local wind fields and its impact on short-term wind forecasting. IEEE Trans Sustain Energy 9:1437-1447. doi:10.1109/TSTE.2018.2789685 PMID:30405893 PMCID:PMC6218160
  • Fantke P, Aylward L, Bare J, Chiu WA, Dodson RE, Dwyer R, Ernstoff A, Howard B, Jantunen M, Jolliet O, Judson RR, Kirchhubel N, Li D, Miller A, Paoli GM, Price P, Rhomberg L, Shen B, Shin H, Teeguarden J, Vallero D, Wambaugh J, Wetmore BA, Zaleski R, McKone TE. 2018. Advancements in life cycle human exposure and toxicity characterization. Environ Health Perspect 126:10. doi:10.1289/ehp3871 PMID:30540492
  • Garbutt TA, Konneker TI, Konganti K, Hillhouse AE, Swift-Haire F, Jones A, Phelps D, Aylor DL, Threadgill DW. 2018. Permissiveness to form pluripotent stem cells may be an evolutionarily derived characteristic in Mus musculus. Sci Rep 8(1):14706. doi:10.1038/s41598-018-32116-8 PMID:30279419 PMCID:PMC6168588
  • Grimm FA, Blanchette A, House JS, Ferguson K, Hsieh N, Dalaijamts C, Wright AA, Anson B, Wright FA, Chiu WA, Rusyn I. 2018. A human population-based organotypic in vitro model for cardiotoxicity screening. ALTEX 35:441-452. doi:10.14573/altex.1805301 PMID:29999168 PMCID:PMC6231908
  • Guyton KZ, Rieswijk L, Wang A, Chiu WA, Smith MT. 2018. Key characteristics approach to carcinogenic hazard identification. Chem Res Toxicol 31(12):1290-1292. doi:10.1021/acs.chemrestox.8b00321 PMID:30521319 PMCID:PMC6424613
  • Guyton KZ, Rusyn I, Chiu WA, Corpet DE, van den Berg M, Ross MK, Christiani DC, Beland FA, Smith MT. 2018. Application of the key characteristics of carcinogens in cancer hazard identification. Carcinogenesis 39(4):614-622. doi:10.1093/carcin/bgy031 PMID:29562322 PMCID:PMC5888955
  • Guyton KZ, Rusyn I, Chiu WA, Corpet DE, van den Berg M, Ross MK, Christiani DC, Beland FA, Smith MT. 2018. Re: Application of the key characteristics of carcinogens in cancer hazard evaluation : response to Goodman, Lynch and Rhomberg. Carcinogenesis 39(8):1091-1093. doi:10.1093/carcin/bgy082 PMID:29982359 PMCID:PMC6067125
  • Hendricks M, Meyer MA, Gharaibeh N, Van Zandt S, Masterson J, Cooper JT, Horney JA, Berke P. 2018. The development of a participatory assessment technique for infrastructure: Neighborhood-level monitoring towards sustainable infrastructure systems. Sustain Cities Soc 38:265-274. doi:10.1016/j.scs.2017.12.039 PMID:30370207 PMCID:PMC6200349
  • Horney JA, Casillas GA, Baker ES, Stone KW, Kirsch KR, Camargo K, Wade TL, McDonald TJ. 2018. Comparing residential contamination in a Houston environmental justice neighborhood before and after Hurricane Harvey. PLoS One 13(2):e0192660. doi:10.1371/journal.pone.0192660 PMID:29420658 PMCID:PMC5805347
  • Huang P, Hwangbo M, Chen Z, Liu Y, Kameoka J, Chu K. 2018. Reusable functionalized hydrogel sorbents for removing long- and short-chain perfluoroalkyl acids (PFAAs) and GenX from aqueous solution. ACS Omega 3(12):17447-17455. doi:10.1021/acsomega.8b02279
  • Hwang H, Fiala M, Wade TL, Park D. 2018. Review of pollutants in urban road dust: Part II. Organic contaminants from vehicles and road management. International Journal of Urban Sciences doi:10.1080/12265934.2018.1538811
  • Kim J, Li W, Newman G, Kil S, Park S. 2018. The influence of urban landscape spatial patterns on single-family housing prices. Environ Plan B Urban Anal City Sci 45(1):26-43. doi:10.1177/0265813516663932 PMID:30345396
  • Klaren WD, Rusyn I. 2018. High-content assay multiplexing for muscle toxicity screening in human-induced pluripotent stem cell-derived skeletal myoblasts. Assay Drug Dev Technol 16(6):333-342. doi:10.1089/adt.2018.860 PMID:30070899 PMCID:PMC6114077
  • Lee J, Newman G, Park Y. 2018. A Comparison of Vacancy Dynamics between Growing and Shrinking Cities Using the Land Transformation Model. Sustainability 10(5):1513. doi:10.3390/su10051513 PMID:30687533
  • Li G, Shabalin AA, Rusyn I, Wright FA, Nobel AB. 2018. An empirical Bayes approach for multiple tissue eQTL analysis. Biostatistics 19(3):391-406. doi:10.1093/biostatistics/kxx048 PMID:29029013 PMCID:PMC6366007
  • Low Y, Alves VM, Fourches D, Sedykh A, Andrade CH, Muratov EN, Rusyn I, Tropsha A. 2018. Chemistry-wide association studies (CWAS): a novel framework for identifying and interpreting structure-activity relationships. J Chem Inf Model 58(11):2203-2213. doi:10.1021/acs.jcim.8b00450 PMID:30376324
  • Luo Y, Hsieh N, Soldatow VY, Chiu WA, Rusyn I. 2018. Comparative analysis of metabolism of trichloroethylene and tetrachloroethylene among mouse tissues and strains. Toxicology 409:33-43. doi:10.1016/j.tox.2018.07.012 PMID:30053492 PMCID:PMC6186498
  • MacLean BX, Prat BS, Egertson JD, MacCoss MJ, Smith RD, Baker ES. 2018. Using skyline to analyze data-containing liquid chromatography, ion mobility spectrometry, and mass spectrometry dimensions. J Am Soc Mass Spectrom 1-7. doi:10.1007/s13361-018-2028-5 PMID:30047074 PMCID:PMC6191345
  • Marvel S, To K, Grimm FA, Wright FA, Rusyn I, Reif DM. 2018. ToxPi Graphical User Interface 2.0: dynamic exploration, visualization, and sharing of integrated data models. BMC Bioinformatics 19(1):80. doi:10.1186/s12859-018-2089-2 PMID:29506467 PMCID:PMC5838926
  • Mendoza-Sanchez I, Autenrieth RL, McDonald TJ, Cunningham JA. 2018. Biological limitations of dechlorination of cis-Dichloroethene during transport in porous media. Environ Sci Technol 52(2):684-691. doi:10.1021/acs.est.7b04426 PMID:29236483 (ahead of print)
  • Meyer MA, Hendricks M, Newman G, Masterson J, Cooper JT, Sansom G, Gharaibeh N, Horney JA, Berke P, Van Zandt S, Cousins T. 2018. Participatory action research: tools for disaster resilience education. Int J Disaster Resil Built Environ 9:402-419. doi:10.1108/ijdrbe-02-2017-0015 PMID:30519288 PMCID:PMC6277034
  • Newman G, Brody SD, Smith AL. 2018. Repurposing vacant land through landscape connectivity. Landsc J 36(1):37-57. doi:10.3368/lj.36.1.37 PMID:30034076 PMCID:PMC6053283 (in press)
  • Nicora CD, Burnum-Johnson KE, Nakayasu ES, Casey CP, White RA, Chowdhury TR, Kyle JE, Kim Y, Smith RD, Metz TO, Jansson J, Baker ES. 2018. The MPLEx protocol for multi-omic analyses of soil samples. J Vis Exp 135:e57343. doi:10.3791/57343 PMID:29912205 PMCID:PMC6101435
  • Onel M, Beykal B, Wang M, Grimm FA, Zhou L, Wright FA, Phillips TD, Rusyn I, Pistikopoulos EN. 2018. Optimal chemical grouping and sorbent material design by data analysis, modeling and dimensionality reduction techniques. Computer Aided Chemical Engineering 43:421-426. doi:10.1016/B978-0-444-64235-6.50076-0 PMID:30534632
  • Onel M, Kieslich CA, Guzman YA, Floudas CA, Pistikopoulos EN. 2018. Big data approach to batch process monitoring: simultaneous fault detection and diagnosis using nonlinear support vector machine-based feature selection. Computers & Chemical Engineering 115:46-63. doi:10.1016/j.compchemeng.2018.03.025 PMID:30386002 PMCID:PMC6205516
  • Onel M, Kieslich CA, Guzman YA, Floudas CA, Pistikopoulos EN. 2018. Reprint of: Big data approach to batch process monitoring: simultaneous fault detection and diagnosis using nonlinear support vector machine-based feature selection. Computers & Chemical Engineering 116:503-520. doi:10.1016/j.compchemeng.2018.10.016
  • Onel M, Kieslich CA, Guzman YA, Pistikopoulos EN. 2018. Simultaneous fault detection and identification in continuous processes via nonlinear Support Vector Machine based feature selection. Int Symp Process Syst Eng 44:2077-2082. doi:10.1016/B978-0-444-64241-7.50341-4 PMID:30534633
  • Orton DJ, Tfaily MM, Moore RJ, LaMarche BL, Zheng X, Fillmore TL, Chu RK, Weitz KK, Monroe ME, Kelly RT, Smith RD, Baker ES. 2018. A customizable flow injection system for automated, high throughput, and time sensitive ion mobility spectrometry and mass spectrometry measurements. Anal Chem 90(1):737-744. doi:10.1021/acs.analchem.7b02986 PMID:29161511 PMCID:PMC5764703
  • Phillips TD, Wang M, Elmore SE, Hearon S, Wang J. 2018. NovaSil clay for the protection of humans and animals from aflatoxins and other contaminants. Clays and Clay Minerals 67(1):99-110. doi:10.1007/s42860-019-0008-x
  • Rusyn I, Greene N. 2018. The impact of novel assessment methodologies in toxicology on green chemistry and chemical alternatives. Toxicol Sci 161:276-284. doi:10.1093/toxsci/kfx196 PMID:29378069
  • Rusyn I, Kleeberger SR, McAllister KA, French JE, Svenson KL. 2018. Introduction to mammalian genome special issue: the combined role of genetics and environment relevant to human disease outcomes. Mamm Genome 29(1-2):1-4. doi:10.1007/s00335-018-9740-0 PMID:29460122 PMCID:PMC5849569
  • Sansom G, Kirsch KR, Stone KW, McDonald TJ, Horney JA. 2018. Domestic exposures to polycyclic aromatic hydrocarbons in a Houston, Texas, environmental justice neighborhood. Environ Justice 11(5):183-191. doi:10.1089/env.2018.0004 PMID:30464781 PMCID:PMC6241524
  • Shapiro AJ, Antoni S, Guyton KZ, Lunn RM, Loomis D, Rusyn I, Jahnke GD, Schwingl PJ, Mehta SS, Addington J, Guha N. 2018. Software Tools to Facilitate Systematic Review Used for Cancer Hazard Identification. Environ Health Perspect 126:104501. doi:10.1289/EHP4224 PMID:30392397 PMCID:PMC6371692
  • Thiagarajan M, Newman G, Van Zandt S. 2018. The projected impact of a neighborhood-scaled green-infrastructure retrofit. Sustainability 10(10):3665. doi:10.3390/su10103665 PMID:30473873 PMCID:PMC6247782
  • Tolgyesi A, Giri A, Barta E, McDonald TJ, Sharma VK. 2018. Determination of thyreostats in urine using supported liquid extraction and mixed-mode cation-exchange solid-phase extraction: Screening and confirmatory methods. Journal of Chromatographic Science 56(9):858-866. doi:10.1093/chromsci/bmy054 PMID:29878072 PMCID:PMC6454509
  • Venkatratnam A, House JS, Konganti K, McKenney C, Threadgill DW, Chiu WA, Aylor DL, Wright FA, Rusyn I. 2018. Population-based dose-response analysis of liver transcriptional response to trichloroethylene in mouse. Mamm Genome 29:168-181. doi:10.1007/s00335-018-9734-y PMID:29353386 PMCID:PMC6094947
  • Wignall JA, Muratov EN, Sedykh A, Guyton KZ, Tropsha A, Rusyn I, Chiu WA. 2018. Conditional toxicity value (CTV) predictor: an in silico approach for generating quantitative risk estimates for chemicals. Environ Health Perspect 126(5):057008. doi:10.1289/EHP2998 PMID:29847084 PMCID:PMC6071978
  • Zheng X, Dupuis KT, Aly NA, Zhou Y, Smith FB, Tang K, Smith RD, Baker ES. 2018. Utilizing ion mobility spectrometry and mass spectrometry for the analysis of polycyclic aromatic hydrocarbons, polychlorinated biphenyls, polybrominated diphenyl ethers and their metabolites. Anal Chim Acta 1037:265-273. doi:10.1016/j.aca.2018.02.054 PMID:30292301 PMCID:PMC6223027
  • Zheng X, Smith RD, Baker ES. 2018. Recent advances in lipid separations and structural elucidation using mass spectrometry combined with ion mobility spectrometry, ion-molecule reactions and fragmentation approaches. Curr Opin Chem Biol 42:111-118. doi:10.1016/j.cbpa.2017.11.009 PMID:29223060 PMCID:PMC5828972

2017

  • Bokkers BG, Mengelers MJ, Bakker MI, Chiu WA, Slob W. 2017. APROBA-Plus: A probabilistic tool to evaluate and express uncertainty in hazard characterization and exposure assessment of substances. Food Chem Toxicol 110:408-417. doi:10.1016/j.fct.2017.10.038 PMID:29074418 PMCID:PMC5793872
  • Cichocki JA, Furuya S, Venkatratnam A, McDonald TJ, Knap A, Wade TL, Sweet S, Chiu WA, Threadgill DW, Rusyn I. 2017. Characterization of variability in toxicokinetics and toxicodynamics of tetrachloroethylene using the collaborative cross mouse population. Environ Health Perspect 125(5):057006. doi:10.1289/ehp788 PMID:28572074 PMCID:PMC5726344
  • Grimm FA, Russell WK, Luo Y, Iwata Y, Chiu WA, Roy T, Boogaard PJ, Ketelslegers HB, Rusyn I. 2017. Grouping of petroleum substances as example UVCBs by ion mobility-mass spectrometry to enable chemical composition-based read-across. Environ Sci Technol 51:7197-7207. doi:10.1021/acs.est.6b06413 PMID:28502166 PMCID:PMC5627358
  • House JS, Grimm FA, Jima DD, Zhou Y, Rusyn I, Wright FA. 2017. A pipeline for high-throughput concentration response modeling of gene expression for toxicogenomics. Front Genet 8:168. doi:10.3389/fgene.2017.00168 PMID:29163636 PMCID:PMC5672545
  • Iwata Y, Klaren WD, Lebakken CS, Grimm FA, Rusyn I. 2017. High-content assay multiplexing for vascular toxicity screening in induced pluripotent stem cell-derived endothelial cells and human umbilical vein endothelial cells. Assay Drug Dev Technol 15(6):267-279. doi:10.1089/adt.2017.786 PMID:28771372 PMCID:PMC5576216
  • Jeong J, Jun M, Genton MG. 2017. Spherical process models for global spatial statistics. Stat Sci 32(4):501-513. doi:10.1214/17-STS620 PMID:30983695 PMCID:PMC6457667
  • Jun M. 2017. Climate model intercomparison. Chance (N Y) 30(4):19-25. doi:10.1080/09332480.2017.1406755 PMID:30976137
  • Kim J, Newman G, Feng H, Merrill J, Park J, Bian J. 2017. Sustainable urbanism for a metropolitan corridor: An evidence-based urban design for Park 10 in Houston, Texas. Landsc Archit Front 5(5):96-109. doi:10.15302/j-laf-20170510 PMID:30386665 PMCID:PMC6207208
  • Meyer M, Hendricks M, Newman G, Horney JA, Berke P, Masterson J, Sansom G, Cousins T, Van Zandt S, Cooper JT. 2017. Urban environmental resiliency: Using participatory methods for hazard adaptation and climate justice in socially vulnerable communities. Int J Disaster Resil Built Environ 9(4):(in press)
  • Reja MY, Brody SD, Highfield WE, Newman G. 2017. Hurricane recovery and ecological resilience: measuring the impacts of wetland alteration post Hurricane Ike on the upper TX coast. Environ Manage 60:1116-1126. doi:10.1007/s00267-017-0943-z PMID:28939984
  • Reja MY, Brody SD, Highfield WE, Newman G. 2017. Understanding the notion between resiliency and recovery through a spatial-temporal analysis of Section 404 wetland alteration permits before and after Hurricane Ike. World Acad Sci Eng Technol 11(4):372-379. PMID:30319740 PMCID:PMC6178950
  • Sharma VK, McDonald TJ, Sohn M, Anquandah GA, Pettine M, Zboril R. 2017. Assessment of toxicity of selenium and cadmium selenium quantum dots: A review. Chemosphere 188:403-413. doi:10.1016/j.chemosphere.2017.08.130 PMID:28892773
  • Sharma VK, Yang X, Cizmas LH, McDonald TJ, Luque R, Sayes CM, Yuan B, Dionysiou DD. 2017. Impact of metal ions, metal oxides, and nanoparticles on the formation of disinfection byproducts during chlorination. Chem Eng J 317:777-792. doi:10.1016/j.cej.2017.02.071
  • Sirenko O, Grimm FA, Ryan KR, Iwata Y, Chiu WA, Parham F, Wignall JA, Anson B, Cromwell EF, Behl M, Rusyn I, Tice RR. 2017. In vitro cardiotoxicity assessment of environmental chemicals using an organotypic human induced pluripotent stem cell-derived model. Toxicol Appl Pharmacol 322:60-74. doi:10.1016/j.taap.2017.02.020 PMID:28259702 PMCID:PMC5734940
  • Szafran AT, Stossi F, Mancini MG, Walker CL, Mancini MA. 2017. Characterizing properties of non-estrogenic substituted bisphenol analogs using high throughput microscopy and image analysis. PLoS One 12(7):e0180141. doi:10.1371/journal.pone.0180141 PMID:28704378 PMCID:PMC5509144
  • Telesford-Checkley J, Mora MA, Gentry TJ, McDonald TJ, Boellstorff DE. 2017. Impacts of heronries on water quality as evaluated through Escherichia coli and fecal sterol analyses. Water Environ Res 89(6):508-518. doi:10.2175/106143017X14902968254430 PMID:28545602
  • Venkatratnam A, Furuya S, Kosyk O, Gold A, Bodnar WM, Konganti K, Threadgill DW, Gillespie DA, Aylor DL, Wright FA, Chiu WA, Rusyn I. 2017. Editor's Highlight: Collaborative Cross mouse population enables refinements to characterization of the variability in toxicokinetics of trichloroethylene and provides genetic evidence for the role of PPAR pathway in its oxidative metabolism. Toxicol Sci 158(1):48-62. doi:10.1093/toxsci/kfx065 PMID:28369613
  • Wang M, Maki CR, Deng Y, Tian Y, Phillips TD. 2017. Development of high capacity enterosorbents for aflatoxin B1 and other hazardous chemicals. Chem Res Toxicol 30(9):1694-1701. doi:10.1021/acs.chemrestox.7b00154 PMID:28768106
  • Zheng X, Aly NA, Zhou Y, Dupuis KT, Bilbao A, Paurus VL, Orton DJ, Wilson R, Payne SH, Smith RD, Baker ES. 2017. A structural examination and collision cross section database for over 500 metabolites and xenobiotics using drift tube ion mobility spectrometry. Chem Sci 8(11):7724-7736. doi:10.1039/c7sc03464d PMID:29568436 PMCID:PMC5853271
  • Zhou Y, Cichocki JA, Soldatow VY, Scholl EH, Gallins P, Jima DD, Yoo HS, Chiu WA, Wright FA, Rusyn I. 2017. Editor's highlight: comparative dose-response analysis of liver and kidney transcriptomic effects of trichloroethylene and tetrachloroethylene in B6C3F1 mouse. Toxicol Sci 160(1):95-110. doi:10.1093/toxsci/kfx165 PMID:28973375 PMCID:PMC5837274
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