Superfund Research Program

Detection and Models of Toxicant Exposure

Center Director: Robert H. Tukey
Grant Number: P42ES010337
Funding Period: 2000-2023

Program Links

Datasets

Total number of records: 142

Dataset Title	Data Types	Data Repository
A Master Cistromic Circuit Governing Hepatic Fibrogenesis	Gene Expression	ArrayExpress
A Master Cistromic Circuit Governing Hepatic Fibrogenesis	Gene Expression	Gene Expression Omnibus (GEO)
A master cistromic circuit governing hepatic fibrogenesis [ChIP-seq]	Gene Expression	ArrayExpress
A master cistromic circuit governing hepatic fibrogenesis [ChIP-seq]	Gene Expression	Gene Expression Omnibus (GEO)
A master cistromic circuit governing hepatic fibrogenesis [expression array]	Gene Expression	ArrayExpress
A master cistromic circuit governing hepatic fibrogenesis [expression array]	Gene Expression	Gene Expression Omnibus (GEO)
Arabidopsis thaliana strain:Columbia-0 (thale cress)	Gene Expression	BioProject
Bacillus sp. GB02-12 MnxG (mnxG) gene, partial cds	Nucleotide Sequence	GenBank
Bacillus sp. GB02-14C MnxG (mnxG) gene, partial cds	Nucleotide Sequence	GenBank
Bacillus sp. GB02-16 MnxG (mnxG) gene, partial cds	Nucleotide Sequence	GenBank
Bacillus sp. GB02-21B MnxG (mnxG) gene, partial cds	Nucleotide Sequence	GenBank
Bacillus sp. GB02-25 MnxG (mnxG) gene, partial cds	Nucleotide Sequence	GenBank
Bacillus sp. GB02-27 MnxG (mnxG) gene, partial cds	Nucleotide Sequence	GenBank
Bacillus sp. GB02-2A MnxG (mnxG) gene, partial cds	Nucleotide Sequence	GenBank
Bacillus sp. GB02-30 MnxG (mnxG) gene, partial cds	Nucleotide Sequence	GenBank
Bacillus sp. GB02-31 MnxG (mnxG) gene, partial cds	Nucleotide Sequence	GenBank
Bacillus sp. GB02-8B MnxG (mnxG) gene, partial cds	Nucleotide Sequence	GenBank
Bacillus sp. MB-1 16S ribosomal RNA gene, partial sequence	Nucleotide Sequence	GenBank
Bacillus sp. MB-1 MnxG (mnxG) gene, partial cds	Nucleotide Sequence	GenBank
Bacillus sp. MB-11 16S ribosomal RNA gene, partial sequence	Nucleotide Sequence	GenBank
Bacillus sp. MB-11 MnxG (mnxG) gene, partial cds	Nucleotide Sequence	GenBank
Bacillus sp. MB-12 16S ribosomal RNA gene, partial sequence	Nucleotide Sequence	GenBank
Bacillus sp. MB-12 MnxG (mnxG) gene, partial cds	Nucleotide Sequence	GenBank
Bacillus sp. MB-3 16S ribosomal RNA gene, partial sequence	Nucleotide Sequence	GenBank
Bacillus sp. MB-3 MnxG (mnxG) gene, partial cds	Nucleotide Sequence	GenBank
Bacillus sp. MB-5 16S ribosomal RNA gene, partial sequence	Nucleotide Sequence	GenBank
Bacillus sp. MB-5 MnxG (mnxG) gene, partial cds	Nucleotide Sequence	GenBank
Bacillus sp. MB-7 16S ribosomal RNA gene, partial sequence	Nucleotide Sequence	GenBank
Bacillus sp. MB-7 MnxG (mnxG) gene, partial cds	Nucleotide Sequence	GenBank
Bacillus sp. MB-9 MnxG (mnxG) gene, partial cds	Nucleotide Sequence	GenBank
Bacillus sp. PL-12 16S ribosomal RNA gene, partial sequence	Nucleotide Sequence	GenBank
Bacillus sp. PL-12 MnxG (mnxG) gene, partial cds	Nucleotide Sequence	GenBank
Bacillus sp. PL-16 16S ribosomal RNA gene, partial sequence	Nucleotide Sequence	GenBank
Bacillus sp. PL-16 MnxG (mnxG) gene, partial cds	Nucleotide Sequence	GenBank
Bacillus sp. PL-21 16S ribosomal RNA gene, partial sequence	Nucleotide Sequence	GenBank
Bacillus sp. PL-21 MnxG (mnxG) gene, partial cds	Nucleotide Sequence	GenBank
Bacillus sp. PL-26 16S ribosomal RNA gene, partial sequence	Nucleotide Sequence	GenBank
Bacillus sp. PL-26 MnxG (mnxG) gene, partial cds	Nucleotide Sequence	GenBank
Bacillus sp. PL-30 16S ribosomal RNA gene, partial sequence	Nucleotide Sequence	GenBank
Bacillus sp. PL-30 MnxG (mnxG) gene, partial cds	Nucleotide Sequence	GenBank
Bacillus sp. PL-7 16S ribosomal RNA gene, partial sequence	Nucleotide Sequence	GenBank
Bacillus sp. PL-7 MnxG (mnxG) gene, partial cds	Nucleotide Sequence	GenBank
Bacillus sp. SD-18 16S ribosomal RNA gene, partial sequence	Nucleotide Sequence	GenBank
Bacillus sp. SD-18 MnxG (mnxG) gene, partial cds	Nucleotide Sequence	GenBank
Bacillus sp. SG-1 16S ribosomal RNA gene, partial sequence	Nucleotide Sequence	GenBank
Blockade of lL17 signaling reverses alcohol-induced liver injury, and excessive alcohol drinking in mice.	Gene Expression	Gene Expression Omnibus (GEO)
Bromodomain containing 9 (BRD9) regulates macrophage inflammatory responses and modulates glucocorticoids receptor activity [ChIP-seq]	Gene Expression	Gene Expression Omnibus (GEO)
Bromodomain containing 9 (BRD9) regulates macrophage inflammatory responses and modulates glucocorticoids receptor activity [CUT&RUN]	Gene Expression	Gene Expression Omnibus (GEO)
Bromodomain containing 9 (BRD9) regulates macrophage inflammatory responses and modulates glucocorticoids receptor activity [RNA-seq]	Gene Expression	Gene Expression Omnibus (GEO)
Chain A, Crystal Structure Of Camp-Dependent Protein Kinase Complexed With Balanol Analog 1	Protein Structure	Protein Data Bank (PDB)
Chain A, Crystal Structure Of Camp-Dependent Protein Kinase Complexed With Balanol Analog 2	Protein Structure	Protein Data Bank (PDB)
Chain A, Crystal Structure Of Camp-Dependent Protein Kinase Complexed With Balanol Analog 8	Protein Structure	Protein Data Bank (PDB)
Chain A, Crystal Structure Of Dimeric Abscisic Acid (Aba) Receptor Pyrabactin Resistance 1 (Pyr1) With Aba-Bound Closed-Lid And Aba-Free Open-Lid Subunits	Protein Structure	Protein Data Bank (PDB)
Chain B, Crystal Structure Of Dimeric Abscisic Acid (Aba) Receptor Pyrabactin Resistance 1 (Pyr1) With Aba-Bound Closed-Lid And Aba-Free Open-Lid Subunits	Protein Structure	Protein Data Bank (PDB)
Circadian Clock Protein CRY Regulates Autoimmunity	Gene Expression	Gene Expression Omnibus (GEO)
Comparisons between liver tissues and freshly isolated hepatocytes from Ikk F/F and Ikk Dhep (Ikk -deleted) mice	Gene Expression	Gene Expression Omnibus (GEO)
Comparisons between liver tissues and freshly isolated hepatocytes from Ikk F/F and Ikk Dhep (Ikk -deleted) mice	Gene Expression	ArrayExpress
Coordinate Regulation of Enhancer Transcription at Super-Enhancers	Gene Expression	Gene Expression Omnibus (GEO)
Correcting altered immunological responses in obesity restores efficacy of targeted biologic therapy for inflammatory disease	Gene Expression	Gene Expression Omnibus (GEO)
Creation of an anti-inflammatory GR cistrome by TLR4 signaling	Gene Expression	Gene Expression Omnibus (GEO)
Creation of an anti-inflammatory GR cistrome by TLR4 signaling	Gene Expression	ArrayExpress
Creation of an anti-inflammatory GR cistrome by TLR4 signaling	Gene Expression	Gene Expression Omnibus (GEO)
Crystal Structure of A-Achbp In Complex With 13-Desmethyl Spirolide C	Protein Structure	Protein Data Bank (PDB)
Crystal Structure Of A-Achbp In Complex With Gymnodimine A	Protein Structure	Protein Data Bank (PDB)
Crystal Structure Of A-achbp In Complex With Pinnatoxin A	Protein Structure	Protein Data Bank (PDB)
Crystal Structure Of A-achbp In Complex With Pinnatoxin G	Protein Structure	Protein Data Bank (PDB)
Decreased adipose tissue oxygenation is associated with insulin resistance in people with obesity	Gene Expression, Gene Expression	Gene Expression Omnibus (GEO)
Desulfotomaculum reducens MI-1, complete genome	Nucleotide Sequence	GenBank
Erythrobacter sp. MB-16 16S ribosomal RNA gene, partial sequence	Nucleotide Sequence	GenBank
Erythrobacter sp. SD-21 16S ribosomal RNA gene, partial sequence	Nucleotide Sequence	GenBank
Fat Regulatory T Cells Drive Age-Associated Insulin Resistance	Nucleotide Sequence	Sequence Read Archive (SRA)
FXR Regulates Intestinal Cancer Stem Cell Proliferation.	Nucleotide Sequence	Sequence Read Archive (SRA)
Gene expression from cadmium treated Arabidopsis seedlings	Gene Expression	Gene Expression Omnibus (GEO)
Gene expression profile of WT and TAK1 KO livers	Gene Expression	ArrayExpress
Gene expression profile of WT and TAK1 KO livers.	Gene Expression	Gene Expression Omnibus (GEO)
Gene expression profiling of normal mouse hepatocyte, premalignant hepatocytes and fully malignant HCC	Gene Expression	Gene Expression Omnibus (GEO)
Genomic Landscape and Therapeutic Targets of Adenosquamous Carcinoma of the Pancreas [CGH Microarray]	Gene Expression	Gene Expression Omnibus (GEO)
Histone modifications in primary intestinal epithelial cells from wild type (F/FUN) and intesinal NCoR1 deletion (ΔIECUN) neonates.	Gene Expression	Gene Expression Omnibus (GEO)
Homo sapiens chromosome 12 microsomal glutathione transferase (MGST1) gene, complete cds	Nucleotide Sequence	GenBank
Homo sapiens microsomal glutathione transferase (MGST1) gene, exons 1 and 2, alternatively spliced products	Nucleotide Sequence	GenBank
Honokiol prevents non-alcoholic steatohepatitis-induced liver cancer via EGFR degradation through the glucocorticoid receptor-MIG6 axis	Gene Expression	Gene Expression Omnibus (GEO)
Human PPARdelta ligand-binding domain in complexed with GW501516	Protein Structure	Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 1	Protein Structure	Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 10	Protein Structure	Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 11	Protein Structure	Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 12	Protein Structure	Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 13	Protein Structure	Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 14	Protein Structure	Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 15	Protein Structure	Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 16	Protein Structure	Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 2	Protein Structure	Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 3	Protein Structure	Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 3	Protein Structure	Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 4	Protein Structure	Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 5	Protein Structure	Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 6	Protein Structure	Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 7	Protein Structure	Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 8	Protein Structure	Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 9	Protein Structure	Protein Data Bank (PDB)
Impact of NCoR1 on global transcriptomic profiling in intestinal epithelial cells during development	Gene Expression	Gene Expression Omnibus (GEO)
Initiation of Parental Genome Reprogramming in Fertilized Oocyte by Splicing Kinase SRPK1-Catalyzed Protamine Phosphorylation	Gene Expression	Gene Expression Omnibus (GEO)
Intestinally-biased FXR agonism browns white adipose tissue preventing obesity and insulin resistance	Nucleotide Sequence	Sequence Read Archive (SRA)
Lactational delivery of Triclosan promotes non-alcoholic fatty liver disease in newborn mice	Gene Expression	Gene Expression Omnibus (GEO)
LC-MS/MS of apoplast proteins from Arabidopsis wild type and ca1ca4 mutant plants	Proteomics	PRIDE Archive
LC-MS/MS to identify proteins present in apoplastic fluid extracted from WT and ca1ca4 mutant Arabidopsis plants grown under low and high CO2 conditions	Proteomics	PRIDE Archive
macrophage_input_DNA	Gene Expression	Gene Expression Omnibus (GEO)
Microenvironmental cues co-regulate pancreatic cancer metabolism and histone acetylation	Gene Expression	Gene Expression Omnibus (GEO)
Murine hepatocellular carcinoma of AlbLTa/b transgenic mice and age matched C57BL/6 mice - 18 months old	Gene Expression	ArrayExpress
Murine hepatocellular carcinoma of AlbLTa/b transgenic mice and age matched C57BL/6 mice - 18 months old.	Gene Expression	Gene Expression Omnibus (GEO)
Mus musculus DNA-damage inducible transcript 3 (Ddit3), transcript variant 1, mRNA	Nucleotide Sequence, Protein Sequence	Reference Sequence Database (RefSeq)
Mus musculus microsomal glutathione S-transferase 1 (MGST1) gene, complete cds	Nucleotide Sequence	GenBank
Neutralization of Oxidized Phospholipids Restrains Nonalcoholic Steatohepatitis	Gene Expression	Gene Expression Omnibus (GEO)
NRF2 Activates Growth Factor Genes and Downstream AKT Signaling to Induce Mouse and Human Hepatomegaly	Gene Expression	Gene Expression Omnibus (GEO)
NRF2 Activates Growth Factor Genes and Downstream AKT Signaling to Induce Mouse and Human Hepatomegaly (RNA-seq dataset 1)	Gene Expression	Gene Expression Omnibus (GEO)
NRF2 Activates Growth Factor Genes and Downstream AKT Signaling to Induce Mouse and Human Hepatomegaly (RNA-seq dataset 2)	Gene Expression	Gene Expression Omnibus (GEO)
Nuclear receptor RORγ is a targetable master regulator of cholesterol in a subtype of breast cancer [ChIP-Seq]	Gene Expression	Gene Expression Omnibus (GEO)
Nuclear receptor RORγ is a targetable master regulator of cholesterol in a subtype of breast cancer [RNA-Seq]	Gene Expression	Gene Expression Omnibus (GEO)
Obesity Potentiates TH2 Immunopathology Via Dysregulation of PPARg	Gene Expression	Gene Expression Omnibus (GEO)
Ornithinibacillus californiensis strain MB-9 16S ribosomal RNA gene, partial sequence	Nucleotide Sequence	GenBank
Orphan Nuclear Receptor ERRγ is required for pancreatic islet beta-cell maturation	Gene Expression	Gene Expression Omnibus (GEO)
Oxidized Lipids and CD36-Mediated Lipid Peroxidation in CD8 T Cells Suppress Anti-Tumor Immune Responses	Gene Expression	Gene Expression Omnibus (GEO)
p62, upregulated during preneoplasia, induces hepatocellular carcinogenesis by maintaining survival of stressed HCC-initiating cells	Gene Expression	Gene Expression Omnibus (GEO)
p62/SQSTM1 by binding to vitamin D receptor inhibits hepatic stellate cell activity, fibrosis and liver cancer	Gene Expression	Gene Expression Omnibus (GEO)
Quantitative transcriptomic analysis of abscisic acid-induced and reactive oxygen species-dependent expression changes and proteomic profiling in Arabidopsis suspension cells	Gene Expression	Gene Expression Omnibus (GEO)
Ramipril for the Treatment of COVID-19 (RAMIC)	Clinical Trials	ClinicalTrials.gov
RNA-seq of hESC samples upon loss of UPF1.	Gene Expression	Gene Expression Omnibus (GEO)
RNA-seq of maturation stage pituitary mouse cell lines and NIH-3T3	Gene Expression	Gene Expression Omnibus (GEO)
Steatohepatitis progresses to cancer via immunosuppression of HCC directed by CD8+Tcells	Nucleotide Sequence	BioProject
Steatohepatitis progresses to cancer via immunosuppression of HCC directed CD8+ T cells	Gene Expression	Gene Expression Omnibus (GEO)
Super-Enhancer-mediated Control of Liver Fibrosis by BET Bromodomain Proteins	Nucleotide Sequence	Sequence Read Archive (SRA)
Super-Enhancer-mediated Control of Liver Fibrosis by BET Bromodomain Proteins	Gene Expression	Gene Expression Omnibus (GEO)
Super-Enhancer-mediated Control of Liver Fibrosis by BET Bromodomain Proteins	Gene Expression	ArrayExpress
Super-Enhancer-mediated Control of Liver Fibrosis by BET Bromodomain Proteins (human)		BioProject
Synectin Promotes Fibrogenesis by Regulating PDGFR Isoforms Through Distinct Mechanisms	Gene Expression	Gene Expression Omnibus (GEO)
The nuclear receptor REV-ERBa modulates Th17 cell differentiation and function by competing with RORgt	Gene Expression	Gene Expression Omnibus (GEO)
The nuclear receptor REV-ERBalpha modulates Th17 cell-mediated autoimmune disease	Gene Expression, Genome Sequences	BioProject
Transcription profiling by array of mouse wild type and Fibroblast specific protein 1 expressing liver	Gene Expression	ArrayExpress
Transcription profiling by high throughput sequencing of immature aerial tissues of A. thaliana seedlings grown at the low and elevated CO2 concentrations	Gene Expression	ArrayExpress
Transcription profiling of fission yeast treated with hydrogen peroxide in fission yeast wild type and csx1 mutant cells	Gene Expression	ArrayExpress
Vitamin d receptor-mediated stromal reprogramming suppresses pancreatitis and enhances pancreatic cancer therapy	Gene Expression	Gene Expression Omnibus (GEO)
Vitamin d receptor-mediated stromal reprogramming suppresses pancreatitis and enhances pancreatic cancer therapy	Gene Expression	ArrayExpress
YIPF6 controls sorting of FGF21 into COPII vesicles and promotes obesity.	Nucleotide Sequence	Sequence Read Archive (SRA)