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Your Environment. Your Health.

Datasets: University of California-San Diego

Superfund Research Program

Detection and Models of Toxicant Exposure

Center Director: Robert H. Tukey
Grant Number: P42ES010337
Funding Period: 2000-2022
View this project in the NIH Research Portfolio Online Reporting Tools (RePORT)

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Datasets

Total number of records: 141

Dataset Title Data Types Data Repository
A Master Cistromic Circuit Governing Hepatic Fibrogenesis Gene Expression ArrayExpress
A Master Cistromic Circuit Governing Hepatic Fibrogenesis Gene Expression Gene Expression Omnibus (GEO)
A master cistromic circuit governing hepatic fibrogenesis [ChIP-seq] Gene Expression ArrayExpress
A master cistromic circuit governing hepatic fibrogenesis [ChIP-seq] Gene Expression Gene Expression Omnibus (GEO)
A master cistromic circuit governing hepatic fibrogenesis [expression array] Gene Expression ArrayExpress
A master cistromic circuit governing hepatic fibrogenesis [expression array] Gene Expression Gene Expression Omnibus (GEO)
Arabidopsis thaliana strain:Columbia-0 (thale cress) Gene Expression BioProject
Bacillus sp. GB02-12 MnxG (mnxG) gene, partial cds Nucleotide Sequence GenBank
Bacillus sp. GB02-14C MnxG (mnxG) gene, partial cds Nucleotide Sequence GenBank
Bacillus sp. GB02-16 MnxG (mnxG) gene, partial cds Nucleotide Sequence GenBank
Bacillus sp. GB02-21B MnxG (mnxG) gene, partial cds Nucleotide Sequence GenBank
Bacillus sp. GB02-25 MnxG (mnxG) gene, partial cds Nucleotide Sequence GenBank
Bacillus sp. GB02-27 MnxG (mnxG) gene, partial cds Nucleotide Sequence GenBank
Bacillus sp. GB02-2A MnxG (mnxG) gene, partial cds Nucleotide Sequence GenBank
Bacillus sp. GB02-30 MnxG (mnxG) gene, partial cds Nucleotide Sequence GenBank
Bacillus sp. GB02-31 MnxG (mnxG) gene, partial cds Nucleotide Sequence GenBank
Bacillus sp. GB02-8B MnxG (mnxG) gene, partial cds Nucleotide Sequence GenBank
Bacillus sp. MB-1 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Bacillus sp. MB-1 MnxG (mnxG) gene, partial cds Nucleotide Sequence GenBank
Bacillus sp. MB-11 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Bacillus sp. MB-11 MnxG (mnxG) gene, partial cds Nucleotide Sequence GenBank
Bacillus sp. MB-12 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Bacillus sp. MB-12 MnxG (mnxG) gene, partial cds Nucleotide Sequence GenBank
Bacillus sp. MB-3 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Bacillus sp. MB-3 MnxG (mnxG) gene, partial cds Nucleotide Sequence GenBank
Bacillus sp. MB-5 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Bacillus sp. MB-5 MnxG (mnxG) gene, partial cds Nucleotide Sequence GenBank
Bacillus sp. MB-7 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Bacillus sp. MB-7 MnxG (mnxG) gene, partial cds Nucleotide Sequence GenBank
Bacillus sp. MB-9 MnxG (mnxG) gene, partial cds Nucleotide Sequence GenBank
Bacillus sp. PL-12 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Bacillus sp. PL-12 MnxG (mnxG) gene, partial cds Nucleotide Sequence GenBank
Bacillus sp. PL-16 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Bacillus sp. PL-16 MnxG (mnxG) gene, partial cds Nucleotide Sequence GenBank
Bacillus sp. PL-21 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Bacillus sp. PL-21 MnxG (mnxG) gene, partial cds Nucleotide Sequence GenBank
Bacillus sp. PL-26 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Bacillus sp. PL-26 MnxG (mnxG) gene, partial cds Nucleotide Sequence GenBank
Bacillus sp. PL-30 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Bacillus sp. PL-30 MnxG (mnxG) gene, partial cds Nucleotide Sequence GenBank
Bacillus sp. PL-7 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Bacillus sp. PL-7 MnxG (mnxG) gene, partial cds Nucleotide Sequence GenBank
Bacillus sp. SD-18 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Bacillus sp. SD-18 MnxG (mnxG) gene, partial cds Nucleotide Sequence GenBank
Bacillus sp. SG-1 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Chain A, Crystal Structure Of Camp-Dependent Protein Kinase Complexed With Balanol Analog 1 Protein Structure Protein Data Bank (PDB)
Chain A, Crystal Structure Of Camp-Dependent Protein Kinase Complexed With Balanol Analog 2 Protein Structure Protein Data Bank (PDB)
Chain A, Crystal Structure Of Camp-Dependent Protein Kinase Complexed With Balanol Analog 8 Protein Structure Protein Data Bank (PDB)
Chain A, Crystal Structure Of Dimeric Abscisic Acid (Aba) Receptor Pyrabactin Resistance 1 (Pyr1) With Aba-Bound Closed-Lid And Aba-Free Open-Lid Subunits Protein Structure Protein Data Bank (PDB)
Chain B, Crystal Structure Of Dimeric Abscisic Acid (Aba) Receptor Pyrabactin Resistance 1 (Pyr1) With Aba-Bound Closed-Lid And Aba-Free Open-Lid Subunits Protein Structure Protein Data Bank (PDB)
Comparisons between liver tissues and freshly isolated hepatocytes from Ikk F/F and Ikk Dhep (Ikk -deleted) mice Gene Expression Gene Expression Omnibus (GEO)
Comparisons between liver tissues and freshly isolated hepatocytes from Ikk F/F and Ikk Dhep (Ikk -deleted) mice Gene Expression ArrayExpress
Coordinate Regulation of Enhancer Transcription at Super-Enhancers Gene Expression Gene Expression Omnibus (GEO)
Creation of an anti-inflammatory GR cistrome by TLR4 signaling Gene Expression Gene Expression Omnibus (GEO)
Creation of an anti-inflammatory GR cistrome by TLR4 signaling Gene Expression Gene Expression Omnibus (GEO)
Creation of an anti-inflammatory GR cistrome by TLR4 signaling Gene Expression Gene Expression Omnibus (GEO)
Creation of an anti-inflammatory GR cistrome by TLR4 signaling Gene Expression ArrayExpress
Crystal Structure of A-Achbp In Complex With 13-Desmethyl Spirolide C Protein Structure Protein Data Bank (PDB)
Crystal Structure Of A-Achbp In Complex With Gymnodimine A Protein Structure Protein Data Bank (PDB)
Crystal Structure Of A-achbp In Complex With Pinnatoxin A Protein Structure Protein Data Bank (PDB)
Crystal Structure Of A-achbp In Complex With Pinnatoxin G Protein Structure Protein Data Bank (PDB)
Desulfotomaculum reducens MI-1, complete genome Nucleotide Sequence GenBank
Erythrobacter sp. MB-16 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Erythrobacter sp. SD-21 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Fat Regulatory T Cells Drive Age-Associated Insulin Resistance Nucleotide Sequence Sequence Read Archive (SRA)
FXR Regulates Intestinal Cancer Stem Cell Proliferation. Nucleotide Sequence Sequence Read Archive (SRA)
Gene expression from cadmium treated Arabidopsis seedlings Gene Expression Gene Expression Omnibus (GEO)
Gene expression profile of WT and TAK1 KO livers Gene Expression ArrayExpress
Gene expression profile of WT and TAK1 KO livers. Gene Expression Gene Expression Omnibus (GEO)
Gene expression profiling of normal mouse hepatocyte, premalignant hepatocytes and fully malignant HCC Gene Expression Gene Expression Omnibus (GEO)
Histone modifications in primary intestinal epithelial cells from wild type (F/FUN) and intesinal NCoR1 deletion (ΔIECUN) neonates. Gene Expression Gene Expression Omnibus (GEO)
Homo sapiens chromosome 12 microsomal glutathione transferase (MGST1) gene, complete cds Nucleotide Sequence GenBank
Homo sapiens microsomal glutathione transferase (MGST1) gene, exons 1 and 2, alternatively spliced products Nucleotide Sequence GenBank
Human PPARdelta ligand-binding domain in complexed with GW501516 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with GW501516 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 1 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 1 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 10 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 10 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 11 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 11 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 12 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 12 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 13 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 13 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 14 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 14 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 15 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 15 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 16 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 16 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 2 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 2 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 3 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 3 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 4 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 4 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 5 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 5 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 6 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 6 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 7 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 7 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 8 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 8 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 9 Protein Structure Protein Data Bank (PDB)
Human PPARdelta ligand-binding domain in complexed with specific agonist 9 Protein Structure Protein Data Bank (PDB)
Impact of NCoR1 on global transcriptomic profiling in intestinal epithelial cells during development Gene Expression Gene Expression Omnibus (GEO)
Intestinally-biased FXR agonism browns white adipose tissue preventing obesity and insulin resistance Nucleotide Sequence Sequence Read Archive (SRA)
LC-MS/MS of apoplast proteins from Arabidopsis wild type and ca1ca4 mutant plants Proteomics PRIDE Archive
LC-MS/MS to identify proteins present in apoplastic fluid extracted from WT and ca1ca4 mutant Arabidopsis plants grown under low and high CO2 conditions Proteomics PRIDE Archive
macrophage_input_DNA Gene Expression Gene Expression Omnibus (GEO)
Microenvironmental cues co-regulate pancreatic cancer metabolism and histone acetylation Gene Expression Gene Expression Omnibus (GEO)
Murine hepatocellular carcinoma of AlbLTa/b transgenic mice and age matched C57BL/6 mice - 18 months old Gene Expression ArrayExpress
Murine hepatocellular carcinoma of AlbLTa/b transgenic mice and age matched C57BL/6 mice - 18 months old. Gene Expression Gene Expression Omnibus (GEO)
Mus musculus DNA-damage inducible transcript 3 (Ddit3), transcript variant 1, mRNA Nucleotide Sequence, Protein Sequence Reference Sequence Database (RefSeq)
Mus musculus microsomal glutathione S-transferase 1 (MGST1) gene, complete cds Nucleotide Sequence GenBank
NRF2 Activates Growth Factor Genes and Downstream AKT Signaling to Induce Mouse and Human Hepatomegaly Gene Expression Gene Expression Omnibus (GEO)
NRF2 Activates Growth Factor Genes and Downstream AKT Signaling to Induce Mouse and Human Hepatomegaly (RNA-seq dataset 1) Gene Expression Gene Expression Omnibus (GEO)
NRF2 Activates Growth Factor Genes and Downstream AKT Signaling to Induce Mouse and Human Hepatomegaly (RNA-seq dataset 2) Gene Expression Gene Expression Omnibus (GEO)
Ornithinibacillus californiensis strain MB-9 16S ribosomal RNA gene, partial sequence Nucleotide Sequence GenBank
Orphan Nuclear Receptor ERRγ is required for pancreatic islet beta-cell maturation Gene Expression Gene Expression Omnibus (GEO)
p62, upregulated during preneoplasia, induces hepatocellular carcinogenesis by maintaining survival of stressed HCC-initiating cells Gene Expression Gene Expression Omnibus (GEO)
p62/SQSTM1 by binding to vitamin D receptor inhibits hepatic stellate cell activity, fibrosis and liver cancer Gene Expression Gene Expression Omnibus (GEO)
Quantitative transcriptomic analysis of abscisic acid-induced and reactive oxygen species-dependent expression changes and proteomic profiling in Arabidopsis suspension cells Gene Expression Gene Expression Omnibus (GEO)
RNA-seq of hESC samples upon loss of UPF1. Gene Expression Gene Expression Omnibus (GEO)
RNA-seq of maturation stage pituitary mouse cell lines and NIH-3T3 Gene Expression Gene Expression Omnibus (GEO)
Steatohepatitis progresses to cancer via immunosuppression of HCC directed by CD8+Tcells Nucleotide Sequence BioProject
Steatohepatitis progresses to cancer via immunosuppression of HCC directed CD8+ T cells Gene Expression Gene Expression Omnibus (GEO)
Super-Enhancer-mediated Control of Liver Fibrosis by BET Bromodomain Proteins Gene Expression Gene Expression Omnibus (GEO)
Super-Enhancer-mediated Control of Liver Fibrosis by BET Bromodomain Proteins Gene Expression ArrayExpress
Super-Enhancer-mediated Control of Liver Fibrosis by BET Bromodomain Proteins Nucleotide Sequence Sequence Read Archive (SRA)
Super-Enhancer-mediated Control of Liver Fibrosis by BET Bromodomain Proteins (human) BioProject
The nuclear receptor REV-ERBa modulates Th17 cell differentiation and function by competing with RORgt Gene Expression Gene Expression Omnibus (GEO)
The nuclear receptor REV-ERBalpha modulates Th17 cell-mediated autoimmune disease Gene Expression, Genome Sequences BioProject
Transcription profiling by array of mouse wild type and Fibroblast specific protein 1 expressing liver Gene Expression ArrayExpress
Transcription profiling by high throughput sequencing of immature aerial tissues of A. thaliana seedlings grown at the low and elevated CO2 concentrations Gene Expression ArrayExpress
Transcription profiling of fission yeast treated with hydrogen peroxide in fission yeast wild type and csx1 mutant cells Gene Expression ArrayExpress
Vitamin d receptor-mediated stromal reprogramming suppresses pancreatitis and enhances pancreatic cancer therapy Gene Expression Gene Expression Omnibus (GEO)
Vitamin d receptor-mediated stromal reprogramming suppresses pancreatitis and enhances pancreatic cancer therapy Gene Expression ArrayExpress
YIPF6 controls sorting of FGF21 into COPII vesicles and promotes obesity. Nucleotide Sequence Sequence Read Archive (SRA)

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