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Your Environment. Your Health.
Search Results for Most Frequently Published Journals (Superfund Research Program)
Superfund Research Program
Search Results
Applied and Environmental Microbiology (137 articles)
2023
Choi JK, Vigliaturo R, Giere R, Perez-Rodriguez I. 2023. Microbe-mineral interactions between asbestos and thermophilic chemolithoautotrophic anaerobes. Appl Environ Microbiol doi:10.1128/aem.02048-22PMID:37184266PMCID:PMC10304897
2021
Mutter TY, Zylstra GJ. 2021. Differential roles of three different upper pathway meta ring cleavage product hydrolases in the degradation of dibenzo-p-dioxin and dibenzofuran by Sphingomonas wittichii strain RW1. Appl Environ Microbiol 87:doi:10.1128/AEM.01067-21PMID:34469199PMCID:PMC8552877
Mutter TY, Zylstra GJ. 2021. Separate upper pathway ring cleavage dioxygenases are required for growth of Sphingomonas wittichii strain RW1 on dibenzofuran and dibenzo-p-dioxin. Appl Environ Microbiol 87:doi:10.1128/AEM.02464-20PMID:33741618
2020
Kushwaha P, Neilson JW, Barberan A, Chen Y, Fontana CG, Butterfield BJ, Maier RM. 2020. Arid ecosystem vegetation canopy-gap dichotomy: Influence on soil microbial composition and nutrient cycling functional potential. Appl Environ Microbiol 87(5):doi:10.1128/AEM.02780-20PMID:33310716 (ahead of print)
2017
Mao X, Polasko A, Alvarez-Cohen L. 2017. Effects of sulfate reduction on trichloroethene dechlorination by Dehalococcoides-containing microbial communities. Appl Environ Microbiol 83(8):e03384-16. doi:10.1128/AEM.03384-16PMID:28159790PMCID:PMC5377507
Men Y, Yu K, Baelum J, Gao Y, Tremblay J, Prestat E, Stenuit B, Tringe SG, Jansson J, Zhang T, Alvarez-Cohen L. 2017. Metagenomic and metatranscriptomic analyses reveal the structure and dynamics of a dechlorinating community containing Dehalococcoides mccartyi and corrinoid-providing microorganisms under cobalamin-limited conditions. Appl Environ Microbiol 83(8):e03508-16. doi:10.1128/aem.03508-16PMID:28188205PMCID:PMC5377501
Vogtmann E, Chen J, Kibriya MG, Chen Y, Islam T, Eunes M, Ahmed A, Naher J, Rahman A, Amir A, Shi J, Abnet CC, Nelson H, Knight R, Chia N, Ahsan H, Sinha R. 2017. Comparison of fecal collection methods for microbiota studies in Bangladesh. Appl Environ Microbiol 83(10):e00361-17. doi:10.1128/aem.00361-17PMID:28258145PMCID:PMC5411505
2015
Mao X, Stenuit B, Polasko A, Alvarez-Cohen L. 2015. Efficient metabolic exchange and electron transfer within a syntrophic trichloroethene-degrading coculture of Dehalococcoides mccartyi 195 and Syntrophomonas wolfei. Appl Environ Microbiol 81(6):2015-2024. doi:10.1128/AEM.03464-14PMID:25576615PMCID:PMC4345365
Rodgers-Vieira EA, Zhang Z, Adrion AC, Gold A, Aitken MD. 2015. Identification of anthraquinone-degrading bacteria in soil contaminated with polycyclic aromatic hydrocarbons. Appl Environ Microbiol 81(11):3775-3781. doi:10.1128/AEM.00033-15PMID:25819957PMCID:PMC4421061
2014
Cologgi DL, Speers AM, Bullard BA, Kelly SD, Reguera G. 2014. Enhanced uranium immobilization and reduction by Geobacter sulfurreducens biofilms. Appl Environ Microbiol 80(21):6638-6646. doi:10.1128/AEM.02289-14PMID:25128347PMCID:PMC4249037
Gutierrez T, Rhodes G, Mishamandani S, Berry D, Whitman WB, Nichols PD, Semple KT, Aitken MD. 2014. Polycyclic aromatic hydrocarbon degradation of phytoplankton-associated Arenibacter spp and description of Arenibacter algicola sp nov, an aromatic hydrocarbon-degrading bacterium. Appl Environ Microbiol 80(2):618-628. doi:10.1128/AEM.03104-13PMID:24212584PMCID:PMC3911095
Men Y, Seth EC, Yi S, Allen RH, Taga ME, Alvarez-Cohen L. 2014. Sustainable growth of Dehalococcoides mccartyi 195 by corrinoid salvaging and remodeling in defined lactate-fermenting consortia. Appl Environ Microbiol 80(7):2133-2141. doi:10.1128/aem.03477-13PMID:24463969PMCID:PMC3993147
2013
Geszvain K, McCarthy JK, Tebo BM. 2013. Elimination of manganese (II, III) oxidation in Pseudomonas putida GB-1 by a double knockout of two putative multicopper oxidase genes. Appl Environ Microbiol 79(1):357-366. doi:10.1128/aem.01850-12PMID:23124227PMCID:PMC3536112
Gutierrez T, Green DH, Nichols PD, Whitman WB, Semple KT, Aitken MD. 2013. Polycyclovorans algicola gen nov, sp nov, an aromatic-hydrocarbon-degrading marine bacterium found associated with laboratory cultures of marine phytoplankton. Appl Environ Microbiol 79(1):205-214. doi:10.1128/AEM.02833-12PMID:23087039PMCID:PMC3536080
Rhodes AN, Fulthorpe RR, Tiedje JM. 2013. Probing the functional diversity of global pristine soil communities with 3-chlorobenzoate reveals that communities of generalists dominate catabolic transformation. Appl Environ Microbiol 79(22):6932-6940. doi:10.1128/AEM.01905-13PMID:23995940PMCID:PMC3811530
Sales CM, Grostern A, Parales JV, Parales RE, Alvarez-Cohen L. 2013. Oxidation of the cyclic ethers 1,4-dioxane and tetrahydrofuran by a monooxygenase in two Pseudonocardia species. Appl Environ Microbiol 79(24):7702-7708. doi:10.1128/aem.02418-13PMID:24096414PMCID:PMC3837796
2012
Grostern A, Sales CM, Zhuang WQ, Erbilgin O, Alvarez-Cohen L. 2012. Glyoxylate metabolism is a key feature of the metabolic degradation of 1,4-dioxane by Pseudonocardia dioxanivorans strain CB1190. Appl Environ Microbiol 78(9):3298-3308. doi:10.1128/AEM.00067-12PMID:22327578PMCID:PMC3346452
Gutierrez T, Aitken MD, Nichols PD, Whitman WB. 2012. Porticoccus hydrocarbonoclasticus sp nov, an aromatic hydrocarbon-degrading bacterium identified in laboratory cultures of marine phytoplankton. Appl Environ Microbiol 78(3):628-637. doi:10.1128/AEM.06398-11PMID:22139001PMCID:PMC3264135
Hartmann EM, Badalamenti JP, Krajmalnik-Brown R, Halden RU. 2012. Quantitative PCR for tracking the megaplasmid-borne biodegredation potential of a model sphingomonad. Appl Environ Microbiol 78:4493-4496. doi:10.1128/aem.00715-12PMID:22492441PMCID:PMC3370553
Lee PH, Dill BD, Louie TS, Shah M, VerBerkmoes NC, Anderson GL, Zinder SH, Alvarez-Cohen L. 2012. Global transcriptomic and proteomic responses of Dehalococcoides ethenogenes strain 195 to fixed nitrogen limitation. Appl Environ Microbiol 78(5):1424-1436. doi:10.1128/AEM.06792-11PMID:22179257PMCID:PMC3294477
Singleton D, Hu J, Aitken MD. 2012. Heterologous expression of polycyclic aromatic hydrocarbon ring-hydroxylating dioxygenase genes from a novel pyrene-degrading betaproteobacterium. Appl Environ Microbiol 78(10):3552-3559. doi:10.1128/AEM.00173-12PMID:22427500PMCID:PMC3346350
Yi S, Seth EC, Men Y, Stabler SP, Allen RH, Alvarez-Cohen L, Taga ME. 2012. Versatility in corrinoid salvaging and remodeling pathways supports corrinoid-dependent metabolism in Dehalococcoides mccartyi. Appl Environ Microbiol 78(21):7745-7752. doi:10.1128/aem.02150-12PMID:22923412PMCID:PMC3485714
2011
Belchik SM, Kennedy DW, Dohnalkova AC, Wang Y, Sevinc PC, Wu H, Lin Y, Lu HP, Fredrickson JK, Shi L. 2011. Extracellular reduction of hexavalent chromium by cytochromes MtrC and OmcA of Shewanella oneidensis MR-1. Appl Environ Microbiol 77:4035-4041. doi:10.1128/AEM.02463-10PMID:21498755PMCID:PMC3131624
Gutierrez T, Singleton D, Aitken MD, Semple KT. 2011. Stable isotope probing of an algal bloom to identify uncultivated members of the Rhodobacteraceae associated with low-molecular-weight polycyclic aromatic hydrocarbon degradation. Appl Environ Microbiol 77(21):7856-7860. doi:10.1128/AEM.06200-11PMID:21926219PMCID:PMC3209190
Iwai S, Johnson TA, Chai B, Hashsham SA, Tiedje JM. 2011. Comparison of the specificities and efficacies of primers for aromatic dioxygenase gene analysis of environmental samples. Appl Environ Microbiol 77:3551-3557. doi:10.1128/aem.00331-11PMID:21498766PMCID:PMC3127589
Jones MD, Singleton D, Sun W, Aitken MD. 2011. Multiple DNA extractions coupled with stable-isotope probing of anthracene-degrading bacteria in contaminated soil. Appl Environ Microbiol 77(9):2984-2991. doi:10.1128/AEM.01942-10PMID:21398486PMCID:PMC3126383
Kim D, Yoo M, Choi KY, Kang BS, Kim TK, Hong SG, Zylstra GJ, Kim E. 2011. Differential degradation of bicyclics with aromatic and alicyclic rings by Rhodococcus sp strain DK17. Appl Environ Microbiol 77:8280-8287. doi:10.1128/AEM.06359-11PMID:21965391PMCID:PMC3233041
Lee TK, Lee J, Sul WJ, Iwai S, Chai B, Tiedje JM, Park J. 2011. Novel biphenyl-oxidizing bacteria and dioxygenase genes from a Korean tidal mudflat. Appl Environ Microbiol 77:3888-3891. doi:10.1128/aem.00023-11PMID:21498748PMCID:PMC3127585
Zhuang WQ, Yi S, Zinder SH, Feng X, Tang YJ, Alvarez-Cohen L. 2011. Selective utilization of exogenous amino acids by Dehalococcoides ethenogenes strain 195 and its effects on growth and dechlorination activity. Appl Environ Microbiol 77:7797-7803. doi:10.1128/aem.05676-11PMID:21890673PMCID:PMC3209135
Anderson CR, Johnson HA, Caputo N, Davis RE, Torpey JW, Tebo BM. 2009. Mn(II) oxidation is catalyzed by heme peroxidases in "Aurantimonas manganoxydans" strain SI85-9A1 and Erythrobacter sp strain SD-21. Appl Environ Microbiol 75(12):4130-4138. doi:10.1128/AEM.02890-08PMID:19411418PMCID:PMC2698374
Iverson SL, Maier RM. 2009. Effects of compost on colonization of roots of plants grown in metalliferous mine tailings, as examined by fluorescence in situ hybridization. Appl Environ Microbiol 75(3):842-847. doi:10.1128/AEM.01434-08PMID:19047384PMCID:PMC2632157
Lamendella R, Santo Domingo JW, Yannarell AC, Ghosh S, DiGiovanni G, Mackie RI, Oerther DB. 2009. Evaluation of swine-specific PCR assays used for fecal source tracking and analysis of molecular diversity of swine-specific "bacteroidales" populations. Appl Environ Microbiol 75(18):5787-5796. doi:10.1128/AEM.00448-09PMID:19633126PMCID:PMC2747877
Lee PH, He J, Zinder S, Alvarez-Cohen L. 2009. Evidence for nitrogen fixation by "Dehalococcoides ethenogenes" strain 195. Appl Environ Microbiol 75(23):7551-7555. doi:10.1128/AEM.01886-09PMID:19820162PMCID:PMC2786412
Lu T, Stroot PG, Oerther DB. 2009. Reverse transcription of 16S rRNA to monitor ribosome-synthesizing bacterial populations in the environment. Appl Environ Microbiol 75(13):4589-4598. doi:10.1128/AEM.02970-08PMID:19395563PMCID:PMC2704851
Mailloux BJ, Alexandrova E, Keimowitz AR, Wovkulich K, Freyer GA, Herron M, Stolz JF, Kenna TC, Pichler T, Polizzotto ML, Dong H, Bishop ME, Knappett PS. 2009. Microbial mineral weathering for nutrient acquisition releases arsenic. Appl Environ Microbiol 75(8):2558-2565. doi:10.1128/AEM.02440-07PMID:19251899PMCID:PMC2675215
Singleton D, Guzman Ramirez L, Aitken MD. 2009. Characterization of a polycyclic aromatic hydrocarbon degradation gene cluster in a phenanthrene-degrading Acidovorax strain. Appl Environ Microbiol 75(9):2613-2620. doi:10.1128/AEM.01955-08PMID:19270134PMCID:PMC2681696
Sul WJ, Park J, Quensen JF, Rodrigues JM, Seliger L, Tsoi TV, Zylstra GJ, Tiedje JM. 2009. DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment. Appl Environ Microbiol 75(17):5501-5506. doi:10.1128/AEM.00121-09PMID:19648381PMCID:PMC2737913
2008
Dick GJ, Podell S, Johnson HA, Rivera-Espinoza Y, Bernier-Latmani R, McCarthy JK, Torpey JW, Clement BG, Gaasterland T, Tebo BM. 2008. Genomic insights into Mn(II) oxidation by the marine alphaproteobacterium Aurantimonas sp strain SI85-9A1. Appl Environ Microbiol 74(9):2646-2658. doi:10.1128/AEM.01656-07PMID:18344346PMCID:PMC2394881
Dick GJ, Torpey JW, Beveridge TJ, Tebo BM. 2008. Direct identification of a bacterial manganese(II) oxidase, the multicopper oxidase MnxG, from spores of several different marine Bacillus species. Appl Environ Microbiol 74(5):1527-1534. PMID:18165363
Johnson DR, Brodie EL, Hubbard AE, Andersen GL, Zinder SH, Alvarez-Cohen L. 2008. Temporal transcriptomic microarray analysis of "Dehalococcoides ethenogenes" strain 195 during the transition into stationary phase. Appl Environ Microbiol 74(9):2864-2872. doi:10.1128/AEM.02208-07PMID:18310438PMCID:PMC2394897
Lee PH, Macbeth TW, Sorenson KS, Deeb RA, Alvarez-Cohen L. 2008. Quantifying genes and transcripts to assess the in situ physiology of "Dehalococcoides" spp in a trichloroethene-contaminated groundwater site. Appl Environ Microbiol 74(9):2728-2739. doi:10.1128/AEM.02199-07PMID:18326677PMCID:PMC2394903
Mendez MO, Neilson JW, Maier RM. 2008. Characterization of a bacterial community in an abandoned semiarid lead-zinc mine tailing site. Appl Environ Microbiol 74(12):3899-3907. doi:10.1128/AEM.02883-07PMID:18424534PMCID:PMC2446573
Mendez MO, Neilson JW, Maier RM. 2008. Microbiological and geochemical characterization of fluvially deposited sulfidic mine tailings. Appl Environ Microbiol 74:3899-3907. PMID:10103249
Nozawa-Inoue M, Jien M, Hamilton NS, Stewart V, Scow KM, Hristova KR. 2008. Quantitative detection of perchlorate-reducing bacteria by real-time PCR targeting the perchlorate reductase gene. Appl Environ Microbiol 74(6):1941-1944. doi:10.1128/AEM.01658-07PMID:18245250PMCID:PMC2268300
Schuler L, Ni Chadhain SM, Jouanneau Y, Meyer C, Zylstra GJ, Hols P, Agathos SN. 2008. Characterization of a novel angular dioxygenase from fluorene-degrading Sphingomonas sp strain LB126. Appl Environ Microbiol 74(4):1050-1057. doi:10.1128/AEM.01627-07PMID:18156320PMCID:PMC2258591
West K, Johnson DR, Hu P, DeSantis TZ, Brodie EL, Lee PH, Feil H, Andersen GL, Zinder S, Alvarez-Cohen L. 2008. Comparative genomics of "Dehalococcoides ethenogenes" 195 and an enrichment culture containing unsequenced "Dehalococcoides" strains. Appl Environ Microbiol 74(11):3533-3540. doi:10.1128/AEM.01835-07PMID:18359838PMCID:PMC2423027
2007
He J, Holmes VF, Lee PH, Alvarez-Cohen L. 2007. Influence of vitamin B-12 and cocultures on the growth of Dehalococcoides isolates in defined medium. Appl Environ Microbiol 73(9):2847-2853. PMID:17337553
Hristova KR, Schmidt R, Chakicherla AY, Legler TC, Wu J, Chain PS, Scow KM, Kane SR. 2007. Comparative transcriptome analysis of Methylibium petroleiphilum PM1 exposed to the fuel oxygenates methyl tert-butyl ether and ethanol. Appl Environ Microbiol 73(22):7347-7357. doi:10.1128/AEM.01604-07PMID:17890343PMCID:PMC2168209
Sharp JO, Sales CM, LeBlanc JC, Liu J, Wood TK, Eltis LD, Mohn WW, Alvarez-Cohen L. 2007. An inducible propane monooxygenase is responsible for N-nitrosodimethylamine degradation by Rhodococcus sp strain RHA1. Appl Environ Microbiol 73(21):6930-6938. doi:10.1128/AEM.01697-07PMID:17873074PMCID:PMC2074979
2006
Colquhoun DR, Schwab KJ, Cole RN, Halden RU. 2006. Detection of norovirus capsid protein in authentic standards and in stool extracts by matrix-assisted laser desorption ionization and nanospray mass spectrometry. Appl Environ Microbiol 72(4):2749-2755.
Cordova-Kreylos AL, Cao Y, Green PG, Hwang H, Kuivila KM, LaMontagne MG, Van De Werfhorst L, Holden PA, Scow KM. 2006. Diversity, composition, and geographical distribution of microbial communities in California salt marsh sediments. Appl Environ Microbiol 72(5):3357-3366. PMID:16672478
Denef VJ, Klappenbach JA, Patrauchan MA, Florizone C, Rodrigues JM, Tsoi TV, Verstraete W, Tiedje JM, Eltis LD. 2006. Genetic and genomic insights into the role of benzoate-catabolic pathway redundancy in Burkholderia xenovorans LB400. Appl Environ Microbiol 72(1):585-595. doi:10.1128/AEM.72.1.585-595.2006PMID:16391095PMCID:PMC1352278
Drees KP, Neilson JW, Betancourt JL, Quade J, Henderson DA, Pryor BM, Maier RM. 2006. Bacterial community structure in the hyperarid core of the Atacama Desert, Chile. Appl Environ Microbiol 72(12):7902-7908. doi:10.1128/AEM.01305-06PMID:17028238PMCID:PMC1694221
Holmes VF, He J, Lee PH, Alvarez-Cohen L. 2006. Discrimination of multiple dehalococcoides strains in a TCE enrichment by quantification of their reductive dehalogenase genes. Appl Environ Microbiol 72(9):5877-5883. PMID:16957207
Lee PH, Johnson DR, Holmes VF, He J, Alvarez-Cohen L. 2006. Reductive dehalogenase gene expression as a biomarker for physiological activity of Dehalococcoides spp. Appl Environ Microbiol 72(9):6161-6168. doi:10.1128/AEM.01070-06PMID:16957242PMCID:PMC1563655
Ni Chadhain SM, Norman RS, Pesce KV, Kukor JJ, Zylstra GJ. 2006. Microbial dioxygenase gene population shifts during polycyclic aromatic hydrocarbon biodegradation. Appl Environ Microbiol 72(6):4078-4087. doi:10.1128/AEM.02969-05PMID:16751518PMCID:PMC1489606
Parnell JJ, Park J, Denef VJ, Tsoi TV, Hashsham SA, Quensen JF, Tiedje JM. 2006. Coping with polychlorinated biphenyl (PCB) toxicity: physiological and genome-wide responses of Burkholderia xenovorans LB400 to PCB-mediated stress. Appl Environ Microbiol 72(10):6607-14. PMID:17021212
2005
Bencheikh-Latmani R, Williams SM, Haucke L, Criddle CS, Wu L, Zhou J, Tebo BM. 2005. Global transcriptional profiling of Shewanella oneidensis MR-1 during Cr(VI) and U(VI) reduction. Appl Environ Microbiol 71(11):7453-7460. doi:10.1128/AEM.71.11.7453-7460.2005PMID:16269787PMCID:PMC1287662
Johnson DR, Lee PH, Holmes VF, Alvarez-Cohen L. 2005. An internal reference technique for accurately quantifying specific mRNAs by real-time PCR with application to the tceA reductive dehalogenase gene. Appl Environ Microbiol 71(7):3866-3871. doi:10.1128/AEM.71.7.3866-3871.2005PMID:16000799PMCID:PMC1169012
Johnson DR, Lee PH, Holmes VF, Fortin AC, Alvarez-Cohen L. 2005. Transcriptional expression of the tceA gene in a dehalococcoides-containing microbial enrichment. Appl Environ Microbiol 71(11):7145-7151. PMID:16269753
Singleton D, Powell SN, Sangaiah R, Gold A, Ball LM, Aitken MD. 2005. Stable-isotope probing of bacteria capable of degrading salicylate, naphthalene, or phenanthrene in a bioreactor treating contaminated soil. Appl Environ Microbiol 71(3):1202-1209. doi:10.1128/AEM.71.3.1202-1209.2005PMID:15746319PMCID:PMC1065189
2004
Bodour AA, Guerrero-Barajas C, Jiorle BV, Malcomson ME, Paull AK, Somogyi A, Trinh LN, Bates RB, Maier RM. 2004. Structure and characterization of flavolipids, a novel group of biosurfactants produced by Flavobacterium sp. Strain MTN11. Appl Environ Microbiol 70(1):114-120. PMID:14711632
Denef VJ, Park J, Tsoi TV, Rouillard JM, Zhang H, Wibbenmeyer JA, Verstraete W, Gulari E, Hashsham SA, Tiedje JM. 2004. Biphenyl and benzoate metabolism in a genomic context: outlining genome-wide metabolic networks in Burkholderia xenovorans LB400. Appl Environ Microbiol 70(8):4961-4970. PMID:15294836
Okano Y, Hristova KR, Leutenegger CM, Jackson LE, Denison RF, Gebreyesus B, Lebauer D, Scow KM. 2004. Application of real-time PCR to study effects of ammonium on population size of ammonia-oxidizing bacteria in soil. Appl Environ Microbiol 70(2):1008-1016. PMID:14766583
Sierra-Alvarez R, Cortinas I, Yenal U, Field JA. 2004. Methanogenic inhibition by arsenic compounds. Appl Environ Microbiol 70(9):5488-5691. PMID:15345461
2003
Bodour AA, Drees KP, Maier RM. 2003. Distribution of biosurfactant-producing bacteria in undisturbed and contaminated arid southwestern soils. Appl Environ Microbiol 69(6):3280-3287. PMID:12788727
Hristova KR, Gebreyesus B, Mackay DM. 2003. Naturally occurring bacteria similar to the methyl tert-butyl ether (MTBE)-degrading strain PM1 are present in MTBE-contaminated groundwater. Appl Environ Microbiol 69(5):2616-2623. PMID:12732529
Law AM, Aitken MD. 2003. Bacterial chemotaxis to naphthalene desorbing from a nonaqueous liquid. Appl Environ Microbiol 69(10):5968-5973. PMID:14532051
Meek IB, Peplow AW, Ake CL, Phillips TD, Beremand MN. 2003. Tri1 encodes the cytochrome P450 monooxygenase for C-8 hydroxylation during trichothecene biosynthesis in Fusarium sporotrichioides and resides upstream of another new Tri gene. Appl Environ Microbiol 69(3):1607-1613. PMID:12620849
Morrison A, Coughlin K, Shine JP, Coull BA, Rex A. 2003. Receiver operating characteristic curve analysis of beach water quality indicator variables. Appl Environ Microbiol 69(11):6405-6411. PMID:14602593
Peplow AW, Meek IB, Wiles MC, Phillips TD, Beremand MN. 2003. Tri16 is required for esterification of position C-8 during trichothecene mycotoxin production by Fusarium sporotrichioides. Appl Environ Microbiol 69(10):5935-5940. PMID:14532047
2002
Cervantes FJ, Dijksma W, Duong-Dac T, Ivanova AE, Lettinga G, Field JA. 2002. Anaerobic mineralization of toluene by enriched sediments with quinones and humus as terminal electron acceptors. Appl Environ Microbiol 67(10):4471-4478. PMID:11571145
Francis CM, Tebo BM. 2002. Enzymatic manganese(II) oxidation by metabolically dormant spores of diverse Bacillus species. Appl Environ Microbiol 68(2):874-880. PMID:11823231PMCID:PMC126666
Park J, Kukor JJ, Abriola LM. 2002. Characterization of the adaptive response to trichloroethylene-mediated stresses in Ralstonia pickettii PKO1. Appl Environ Microbiol 68(11):5231-5240. PMID:12406709PMCID:PMC129943
Cheung P, Kinkle BK. 2001. Pyrene degradation and mycobacterial diversity in petroleum-contaminated soils. Appl Environ Microbiol 67(5):2222-2229.
Chiavelli DA, Marsh JW, Taylor RK. 2001. The mannose-sensitive hemagglutinin of Vibrio cholerae promotes adherence to zooplankton. Appl Environ Microbiol 67(7):3220-3225. PMID:11425745
Francis CM, Co E, Tebo BM. 2001. Enzymatic manganese(II) oxidation by a marine alpha-proteobacterium. Appl Environ Microbiol 67(9):4024-4029. PMID:11526000PMCID:PMC93124
Hristova KR, Lutenegger CM, Scow KM. 2001. Detection and quantification of methyl tert-butyl ether-degrading strain PM1 by real-time TaqMan PCR. Appl Environ Microbiol 67(11):5154-5160. PMID:11679339
Kahng H, Malinverni J, Majko MM, Kukor JJ. 2001. Genetic and functional analysis of the tbc operons for catabolism of alkyl- and chloroaromatic compounds in Burkholderia sp strain JS150. Appl Environ Microbiol 67(10):4805-4816. PMID:11571188PMCID:PMC93235
Roane TM, Josephson KL, Pepper IL. 2001. Dual-bioaugmentation strategy to enhance remediation of cocontaminated soil. Appl Environ Microbiol 67(7):3208-3215. PMID:11425743
2000
Al-Tahhan RA, Sandrin TR, Bodour AA, Maier RM. 2000. Rhamnolipid-induced removal of lipopolysaccharide from Pseudomonas aeruginosa: effect on cell surface properties and interaction with hydrophobic substrates. Appl Environ Microbiol 66(8):3262-3268. PMID:10919779
Hohnstock AM, Stuart-Keil KG, Kull EE, Madsen EL. 2000. Naphthalene and donor cell density influence field conjugation of naphthalene catabolism plasmids. Appl Environ Microbiol 66(7):3088-3092. PMID:10877811
Kazunga C, Aitken MD. 2000. Products from the incomplete metabolism of pyrene by polycyclic aromatic hydrocarbon-degrading bacteria. Appl Environ Microbiol 66:1917-1922. PMID:10788360
Macalady JL, Mack EE, Nelson DC, Scow KM. 2000. Sediment microbial community structure and mercury methylation in mercury-polluted Clear Lake, California. Appl Environ Microbiol 66(4):1479-1488. PMID:10742230
Newby DT, Gentry TJ, Pepper IL. 2000. Comparison of 2,4-dichlorophenoxyacetic acid degradation and plasmid transfer in soil resulting from bioaugmentation with two different pJP4 donors. Appl Environ Microbiol 66(8):3399-3407. PMID:10919798
Newby DT, Josephson KL, Pepper IL. 2000. Detection and characterization of plasmid pJP4 transfer to indigenous soil bacteria. Appl Environ Microbiol 66(1):290-296. PMID:10618238
1999
Chu K, Alvarez-Cohen L. 1999. Evaluation of toxic effects of aeration and trichloroethylene oxidation on methanotrophic bacteria grown with different nitrogen sources. Appl Environ Microbiol 65(2):766-772. PMID:9925614
Hanson JR, Ackerman CE, Scow KM. 1999. Biodegradation of methyl tert-butyl ether by a bacterial pure culture. Appl Environ Microbiol 65(11):4788-4792. PMID:10543787PMCID:PMC91645
Hanson JR, Macalady JL, Harris D, Scow KM. 1999. Linking toluene degradation with specific microbial populations in soil. Appl Environ Microbiol 65(12):5403-5408. PMID:10583996PMCID:PMC91736
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1998
Chu K, Alvarez-Cohen L. 1998. Effect of nitrogen source on growth and trichloroethylene degradation by methane-oxidizing bacteria. Appl Environ Microbiol 64(9):3451-3457. PMID:9726896PMCID:PMC106746
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Tay ST, Hemond HF, Polz MF, Cavanaugh CM, DeJesus I, Krumholz LR. 1998. Two new Mycobacterium strains and their role in toluene degradation in a contaminated stream. Appl Environ Microbiol 64(5):1715-1720. PMID:9572941PMCID:PMC106220
Tellez CM, Gaus KP, Graham DW, Arnold RG, Guzman R. 1998. Isolation of copper biochelates from Methylosinus trichosporium OB3b and soluble methane monooxygenase mutants. Appl Environ Microbiol 64(3):1115-1122. PMID:9501450
1997
Fuller ME, Scow KM. 1997. Impact of trichloroethylene and toluene on nitrogen cycling in soil. Appl Environ Microbiol 63(10):4015-4019. PMID:9327567
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Leahy JG, Olsen RH, Johnson GR. 1997. Cross-regulation of toluene monooxygenases by the transcriptional activators TbmR and TbuT. Appl Environ Microbiol 63(9):3736-3739. PMID:9293027
Massol-Deya A, Weller R, Rios-Hernandez L, Zhou J, Hickey RF, Tiedje JM. 1997. Succession and convergence of biofilm communities in fixed-film reactors treating aromatic hydrocarbons in groundwater. Appl Environ Microbiol 63(1):270-276. PMID:8979355
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Zhou J, Palumbo AV, Tiedje JM. 1997. Sensitive detection of a novel class of toluene-degrading denitrifiers, Azoarcus tolulyticus, with small-subunit rRNA primers and probes. Appl Environ Microbiol 63(6):2384-2390. PMID:9172359PMCID:PMC168532
1996
Chang H, Alvarez-Cohen L. 1996. Biodegradation of individual and multiple chlorinated aliphatic hydrocarbons by methane-oxidizing cultures. Appl Environ Microbiol 62(9):3371-3377. PMID:8795228
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DiGiovanni GD, Neilson JW, Pepper IL, Sinclair NA. 1996. Gene transfer of Alcaligenes eutrophus JMP134 plasmid pJP4 to indigenous soil recipients. Appl Environ Microbiol 62(7):2521-2526. PMID:8779592
Gray JP, Herwig RP. 1996. Phylogenetic analysis of the bacterial communities in marine sediments. Appl Environ Microbiol 62(11):4049-4059. PMID:8899989PMCID:PMC168226
Grimberg SJ, Stringfellow WT, Aitken MD. 1996. Quantifying the biodegradation of phenanthrene by Pseudomonas stutzeri P16 in the presence of a nonionic surfactant. Appl Environ Microbiol 62(7):2387-2392. PMID:8779577
Kukor JJ, Olsen RH. 1996. Catechol 2,3-dioxygenases functional in oxygen-limited (hypoxic) environments. Appl Environ Microbiol 62(5):1728-1740. PMID:8633871PMCID:PMC167947
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Migaud ME, Chee-Sanford JC, Tiedje JM, Frost JW. 1996. Benzylfumaric, benzylmaleic, Z- and E-phenylitaconic acids: synthesis, characterization and correlation with a metabolite generated by Azoarcus tolulyticus strain Tol-4 during anaerobic toluene degradation. Appl Environ Microbiol 62(3):974-978. PMID:8975624
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Sutton SD, Pfaller SL, Shann JR, Warshawsky D, Kinkle BK, Vestal JR. 1996. Aerobic biodegradation of 4-methylquinoline by a soil bacterium. Appl Environ Microbiol 62(8):2910-2914. PMID:8702284
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1995
Dybas MJ, Tatara G, Criddle CS. 1995. Localization and characterization of the carbon tetrachloride transformation activity of Pseudomonas sp. strain KC. Appl Environ Microbiol 61(2):758-762. PMID:16534941
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1994
Neilson JW, Josephson KL, Pepper IL, Arnold RG, DiGiovanni GD, Sinclair NA. 1994. Frequency of horizontal gene transfer of a large catabolic plasmid (pJP4) in soil. Appl Environ Microbiol 60:4053-4058. PMID:7993092
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1993
Tatara G, Dybas MJ, Criddle CS. 1993. Effects of medium and trace metals on the kinetics of carbon tetrachloride transformation by Pseudomonas sp. strain KC. Appl Environ Microbiol 59(7):2126-2131. PMID:8357248
1992
Neilson JW, Josephson KL, Pillai SD, Pepper IL. 1992. Polymerase chain reaction and gene probe detection of the 2,4-dichlorophenoxyacetic acid degradation plasmid pJP4. Appl Environ Microbiol 58:1271-1275. PMID:1599246
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1991
Grosser RJ, Warshawsky D, Vestal JR. 1991. Indigenous and enhanced mineralization of pyrene, benzo(a)-pyrene and carbazole in soils. Appl Environ Microbiol 57:3462-3469. PMID:1785924
1990
Criddle CS, DeWitt JT, Grbic-Galic D, McCarty PL. 1990. Transformation of carbon tetrachloride by Pseudomonas sp. strain KC under denitrification conditions. Appl Environ Microbiol 56(11):3240-3246. PMID:2268146
