Superfund Research Program

The ISME Journal (impact factor: 10.302)

2020

• Chen Y, Neilson JW, Kushwaha P, Maier RM, Barberan A. 2020. Life-history strategies of soil microbial communities in an arid ecosystem. ISME J doi:10.1038/s41396-020-00803-y PMID:33051582

2017

• Wang P, Tang S, Nemr K, Flick R, Yan J, Mahadevan R, Yakunin AF, Loeffler FE, Edwards EA. 2017. Refined experimental annotation reveals conserved corrinoid autotrophy in chloroform-respiring Dehalobacter isolates. ISME J 11:626-640. doi:10.1038/ismej.2016.158 PMID:27898054 PMCID:PMC5322310
• Yang Y, Higgins SA, Yan J, Simsir B, Chourey K, Iyer R, Hettich RL, Baldwin BR, Ogles D, Loeffler FE. 2017. Grape pomace compost harbors organohalide-respiring Dehalogenimonas species with novel reductive dehalogenase genes. ISME J 11:2767-2780. doi:10.1038/ismej.2017.127 PMID:28809851 PMCID:PMC5702733

2016

• Berg M, Stenuit B, Ho J, Wang A, Parke C, Knight M, Alvarez-Cohen L, Shapira M. 2016. Assembly of the Caenorhabditis elegans gut microbiota from diverse soil microbial environments. ISME J 10(8):1998-2009. doi:10.1038/ismej.2015.253 PMID:26800234 PMCID:PMC5029150
• Yan J, Şimşir B, Farmer AT, Bi M, Yang Y, Campagna SR, Loeffler FE. 2016. The corrinoid cofactor of reductive dehalogenases affects dechlorination rates and extents in organohalide-respiring Dehalococcoides mccartyi. ISME J 10(5):1092-1101. doi:10.1038/ismej.2015.197 PMID:26555247 PMCID:PMC5029212

2014

• Gutierrez T, Aitken MD. 2014. Role of methylotrophs in the degradation of hydrocarbons during the Deepwater Horizon oil spill. ISME J 8(12):2543-2545. doi:10.1038/ismej.2014.88 PMID:24865772 PMCID:PMC4260708
• Mason O, Scott N, Gonzalez A, Robbins-Pianka A, Bælum J, Kimbrel J, Bouskill N, Prestat E, Borglin S, Joyner D, Fortney J, Jurelevicius D, Stringfellow WT, Alvarez-Cohen L, Hazen T, Knight R, Gilbert J, Jansson J. 2014. Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill. ISME J 8(7):1464-1475. doi:10.1038/ismej.2013.254 PMID:24451203 PMCID:PMC4069396

2013

• Gutierrez T, Singleton D, Berry D, Yang T, Aitken MD, Teske A. 2013. Hydrocarbon-degrading bacteria enriched by the Deepwater Horizon oil spill identified by cultivation and DNA-SIP. ISME J 7(11):2091-2104. doi:10.1038/ismej.2013.98 PMID:23788333 PMCID:PMC3806270

2012

• Brisson VL, West KA, Lee PH, Tringe SG, Brodie EL, Alvarez-Cohen L. 2012. Metagenomic analysis of a stable trichloroethene-degrading microbial community. ISME J 6:1702-1714. doi:10.1038/ismej.2012.15 PMID:22378537 PMCID:PMC3498913
• Men Y, Feil H, VerBerkmoes NC, Shah M, Johnson DR, Lee PH, West KA, Zinder SH, Andersen GL, Alvarez-Cohen L. 2012. Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and proteomic analyses. ISME J 6:410-421. doi:10.1038/ismej.2011.111 PMID:21881617 PMCID:PMC3260503

2011

• Lee PH, Cheng D, Hu P, West KA, Dick GJ, Brodie EL, Andersen GL, Zinder SH, He J, Alvarez-Cohen L. 2011. Comparative genomics of two newly isolated Dehalococcoides strains and an enrichment using a genus microarray. ISME J 5(6):1014-1024. doi:10.1038/ismej.2010.202 PMID:21228894 PMCID:PMC3131851

2010

• Iwai S, Chai B, Sul WJ, Cole JR, Hashsham SA, Tiedje JM. 2010. Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment. ISME J 4(2):279-285. doi:10.1038/ismej.2009.104 PMID:19776767 PMCID:PMC2808446

2007

• Leigh MB, Pellizari VH, Uhlik O, Sutka R, Rodrigues JM, Ostrom N, Zhou J, Tiedje JM. 2007. Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs). ISME J 1(2):134-148. doi:10.1038/ismej.2007.26 PMID:18043623